Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0018463

Physical Location & Seq

Genomic Coordinates Forward (+)

30554038 .. 30555400

Gene Structure 1363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38601.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCAGGCGGAAAGAGGCGGCGAAAGCTGCTGGTTCCTTCTGATATGCACGCGAATCGTGCCAAGAATTCCACCAACCGCTTGAAGGTTCTTGTTTCAATGGACGAGACTGCTGCTTGTTCCATAGACTATGAAGATTTATTGAAGCATGAAGAAGTCCAACGTTTAAGTTACCTACCTCGCCATTTTGTTCTTGTATGGAATCCTAGTAGAGACACCTGCAAGTTACCTCAGGCTCCCCGTTTTCTTAATTGCTATGGTAATAGTAAAAATCTTCCTAAGCTTTTTGGATTTGGTTATGATTCTAGCACTGAAGATTACAAGGTCTTACTAATTGGGAACATGAGTAGCACTGCTAAAGAGTGCATCACCCAAATCCATCTCTTTGCACTAAAAACTGGTTCATGGAGGTGTTATGAAGAATCTAGGAGGATTGAAAGCAAAGAAGAATGCCTAGATGGTTCAAGATCAAGAATTGTAGCTTTTGATTTAGCTGAGGAGCAATTTCGAGAGACGTCCGTCTTTATCCAGCTTCATCGACAAAGAGTGCATGATTCGACGGACCAAAGAATCTACACTTACAGAGTTACAGTATGGGTGATGAAGAAGTATGGGATTGAGAAATCTTGGACTATGTTCTTACGCATTCCTTTGAACATTTTTCTGCCTATAAAACGTGGGAATTACATTGGTATGAATGACTACCTATTTCCTGTACATATTTTAAAAGATGGTAAAGTTTTGATGAGTTGCGATGACATCTCAAAACAACATAAAGAGGAGGAGGAAGAAGCATCAAAGAAACATGCAATGACCAGCTGTCTGAACCTTAACCAAGAAAGTCTTGAGCATCTACATGCAGGAAGCCTTGGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

293

Amino Acids

33.92

Weight (kDa)

8.8

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	46 - 170	1.3e-07	F-box associated beta propeller domain
FBA_1	PF07734	64 - 256	2e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38601 FvH4_7g02841
rosa_chinensis	RchiOBHm_Chr4g0391071
rosa_roxburghii	Rroxscaffold_2G00095950 Rroxscaffold_2G00096000 Rroxscaffold_5G00337600 Rroxscaffold_5G00337640
rosa_rugosa	Rorug02G0430800 Rorug03G0338800
rosa_samantha	Rh4BG037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
AatII	GACGTC	1 cut(s)	518
Acc36I	ACCTGC	1 cut(s)	227
AccII	CGCG	1 cut(s)	53
AciI	CCGC	3 cut(s)	9, 19, 79
AclI	AACGTT	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	67
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	515
AfaI	GTAC	1 cut(s)	717
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	6 cut(s)	85, 99, 145, 437, 465, 655
AhdI	GACNNNNNGTC	1 cut(s)	819
AluBI	AGCT	6 cut(s)	28, 283, 482, 494, 532, 819
AluI	AGCT	6 cut(s)	28, 283, 482, 494, 532, 819
Alw26I	GTCTC	3 cut(s)	101, 207, 506
ApeKI	GCWGC	2 cut(s)	28, 113
ApoI	RAATTY	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	562
AsuHPI	GGTGA	2 cut(s)	361, 610
AvaII	GGWCC	1 cut(s)	562
AxyI	CCTNAGG	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	495
BbvI	GCAGC	2 cut(s)	15, 100
BccI	CCATC	3 cut(s)	387, 452, 725
BcgI	CGANNNNNNTGC	4 cut(s)	38, 72, 95, 129
BcoDI	GTCTC	3 cut(s)	101, 207, 506
BfaI	CTAG	4 cut(s)	207, 306, 426, 455
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	3 cut(s)	20, 29, 114
BlsI	GCNGC	3 cut(s)	21, 30, 115
Bme18I	GGWCC	1 cut(s)	562
BmeRI	GACNNNNNGTC	1 cut(s)	819
BmgT120I	GGNCC	1 cut(s)	562
BmiI	GGNNCC	2 cut(s)	36, 237
BmsI	GCATC	3 cut(s)	375, 803, 859
BoxI	GACNNNNGTC	1 cut(s)	518
Bpu10I	CCTNAGC	2 cut(s)	279, 495
BpuEI	CTTGAG	1 cut(s)	866
BsaHI	GRCGYC	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	868
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	403
Bse21I	CCTNAGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	816
BseDI	CCNNGG	1 cut(s)	868
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	2 cut(s)	245, 486
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	3 cut(s)	512, 794, 797
BseXI	GCAGC	2 cut(s)	15, 100
Bsh1236I	CGCG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	3 cut(s)	101, 207, 506
BsmBI	CGTCTC	1 cut(s)	506
BsmI	GAATGC	2 cut(s)	455, 645
Bsp1407I	TGTACA	1 cut(s)	715
Bsp143I	GATC	1 cut(s)	467
BspACI	CCGC	3 cut(s)	9, 19, 79
BspCNI	CTCAG	2 cut(s)	244, 487
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	36, 237
BspMI	ACCTGC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	816
BsrGI	TGTACA	1 cut(s)	715
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	868
BssMI	GATC	1 cut(s)	467
BssNI	GRCGYC	1 cut(s)	515
BssT1I	CCWWGG	1 cut(s)	868
Bst4CI	ACNGT	1 cut(s)	592
BstACI	GRCGYC	1 cut(s)	515
BstAUI	TGTACA	1 cut(s)	715
BstC8I	GCNNGC	2 cut(s)	7, 51
BstDEI	CTNAG	3 cut(s)	231, 279, 495
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	1 cut(s)	470
BstMAI	GTCTC	3 cut(s)	101, 207, 506
BstMBI	GATC	1 cut(s)	467
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 28, 59
BstNSI	RCATGY	2 cut(s)	809, 860
BstPAI	GACNNNNGTC	1 cut(s)	518
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	15, 100
Bsu36I	CCTNAGG	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	768
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	309, 351
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	2 cut(s)	7, 51
Cfr13I	GGNCC	1 cut(s)	562
Csp6I	GTAC	1 cut(s)	716
CviAII	CATG	6 cut(s)	149, 343, 405, 551, 806, 857
CviJI	RGCY	8 cut(s)	28, 236, 283, 482, 494, 532, 819, 867
CviKI_1	RGCY	8 cut(s)	28, 236, 283, 482, 494, 532, 819, 867
CviQI	GTAC	1 cut(s)	716
DdeI	CTNAG	3 cut(s)	231, 279, 495
DpnI	GATC	1 cut(s)	469
DpnII	GATC	1 cut(s)	467
DraI	TTTAAA	1 cut(s)	726
DriI	GACNNNNNGTC	1 cut(s)	819
Eam1105I	GACNNNNNGTC	1 cut(s)	819
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	868
Eco47I	GGWCC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	333
Eco81I	CCTNAGG	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	868
ErhI	CCWWGG	1 cut(s)	868
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	6 cut(s)	152, 346, 408, 554, 809, 860
FalI	AAGNNNNNCTT	2 cut(s)	828, 860
FatI	CATG	6 cut(s)	148, 342, 404, 550, 805, 856
Fnu4HI	GCNGC	3 cut(s)	20, 29, 114
Fsp4HI	GCNGC	3 cut(s)	20, 29, 114
FspBI	CTAG	4 cut(s)	207, 306, 426, 455
GluI	GCNGC	3 cut(s)	20, 29, 114
Hin1I	GRCGYC	1 cut(s)	515
Hin1II	CATG	6 cut(s)	152, 346, 408, 554, 809, 860
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	7 cut(s)	55, 202, 302, 422, 554, 570, 873
HphI	GGTGA	2 cut(s)	361, 610
Hpy188I	TCNGA	2 cut(s)	43, 825
Hpy188III	TCNNGA	4 cut(s)	465, 471, 509, 845
Hpy99I	CGWCG	1 cut(s)	562
HpyAV	CCTTC	2 cut(s)	48, 79
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4IV	ACGT	3 cut(s)	163, 515, 676
HpyCH4V	TGCA	7 cut(s)	49, 222, 366, 389, 550, 809, 860
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 28, 59
HpyF3I	CTNAG	3 cut(s)	231, 279, 495
HpySE526I	ACGT	3 cut(s)	163, 515, 676
Hsp92I	GRCGYC	1 cut(s)	515
Hsp92II	CATG	6 cut(s)	152, 346, 408, 554, 809, 860
Kzo9I	GATC	1 cut(s)	467
LmnI	GCTCC	2 cut(s)	241, 499
LpnPI	CCDG	8 cut(s)	17, 218, 232, 384, 542, 726, 829, 846
Lsp1109I	GCAGC	2 cut(s)	15, 100
LweI	GCATC	3 cut(s)	375, 803, 859
MaeI	CTAG	4 cut(s)	207, 306, 426, 455
MaeII	ACGT	3 cut(s)	163, 515, 676
MaeIII	GTNAC	3 cut(s)	170, 225, 586
MalI	GATC	1 cut(s)	469
MboI	GATC	1 cut(s)	467
MboII	GAAGA	8 cut(s)	146, 164, 266, 326, 431, 458, 616, 800
MluCI	AATT	6 cut(s)	67, 250, 333, 474, 503, 682
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	9 cut(s)	9, 189, 240, 402, 423, 490, 772, 775, 778
MseI	TTAA	4 cut(s)	167, 249, 725, 831
MslI	CAYNNNNRTG	3 cut(s)	409, 692, 855
MspA1I	CMGCKG	1 cut(s)	819
Mva1269I	GAATGC	2 cut(s)	455, 645
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	25, 28, 59
NdeII	GATC	1 cut(s)	467
NlaIII	CATG	6 cut(s)	152, 346, 408, 554, 809, 860
NlaIV	GGNNCC	2 cut(s)	36, 237
NspI	RCATGY	2 cut(s)	809, 860
PaqCI	CACCTGC	1 cut(s)	227
PctI	GAATGC	2 cut(s)	455, 645
PfeI	GAWTC	7 cut(s)	55, 202, 302, 422, 554, 570, 873
PkrI	GCNGC	3 cut(s)	21, 30, 115
PshAI	GACNNNNGTC	1 cut(s)	518
Psp1406I	AACGTT	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	36, 237
PspPI	GGNCC	1 cut(s)	562
PvuII	CAGCTG	1 cut(s)	819
RsaI	GTAC	1 cut(s)	717
RsaNI	GTAC	1 cut(s)	716
RseI	CAYNNNNRTG	3 cut(s)	409, 692, 855
SaqAI	TTAA	4 cut(s)	167, 249, 725, 831
SatI	GCNGC	3 cut(s)	20, 29, 114
Sau3AI	GATC	1 cut(s)	467
Sau96I	GGNCC	1 cut(s)	562
SfaNI	GCATC	3 cut(s)	375, 803, 859
SinI	GGWCC	1 cut(s)	562
SmiMI	CAYNNNNRTG	3 cut(s)	409, 692, 855
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	6 cut(s)	67, 250, 333, 474, 503, 682
SsiI	CCGC	3 cut(s)	9, 19, 79
SspMI	CTAG	4 cut(s)	207, 306, 426, 455
StyI	CCWWGG	1 cut(s)	868
TaaI	ACNGT	1 cut(s)	592
TaiI	ACGT	3 cut(s)	166, 518, 679
TaqI	TCGA	3 cut(s)	508, 538, 557
TasI	AATT	6 cut(s)	67, 250, 333, 474, 503, 682
TatI	WGTACW	1 cut(s)	715
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	7 cut(s)	55, 202, 302, 422, 554, 570, 873
Tru1I	TTAA	4 cut(s)	167, 249, 725, 831
Tru9I	TTAA	4 cut(s)	167, 249, 725, 831
TscAI	CASTG	2 cut(s)	316, 358
TseI	GCWGC	2 cut(s)	28, 113
TspDTI	ATGAA	7 cut(s)	147, 165, 393, 432, 524, 617, 710
TspGWI	ACGGA	2 cut(s)	508, 575
TspRI	CASTG	2 cut(s)	316, 358
VpaK11BI	GGWCC	1 cut(s)	562
XapI	RAATTY	1 cut(s)	67
XceI	RCATGY	2 cut(s)	809, 860
XspI	CTAG	4 cut(s)	207, 306, 426, 455
ZraI	GACGTC	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.