Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0018463

Physical Location & Seq

Genomic Coordinates Forward (+)

5805962 .. 5807215

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGAGGTGATCCTAGACGGCAGCCTTCCCTCGGAAATTTTTGTCCAGATACTGTCTAGGCTTCCTTTCCAATCACTACGACAATTTCGTTTTGTATGCAAGTCATGGTGTACTTTAATATCCAGTTCATATTTTCTCATCAAACACACCAGCGTCACTGTTGGAGATAGAAGCAGGTTAAAGTTCCTATATGGATTAGATCCACCCCGATTCATACACTACGAAGCATTATTGAACAAGGATGGTCCTGTTGCGCCTAGGAAACTTGTTGCCCCTATGTGCGTTAAAGAAGATGATAATCGATTTAATTACCGCCTTATAGGTTCCTGCAATGGCTTGATATGTCTATATTGTGATGATACTCACGAAGAGACCACCGAGGAAGAAGATACCACCGACGAAGTTATACAACTTCATCTATGCTCCGTCGACTTGGTCGTATGGAACCCTTGCACTAGAGATGCGTGCAGGTTATCAGGACCGACTCTTTTAGGAAGCGTATTTGTAGGAGTTTTTTCGGGATTTGGTTATGATTCCACCACCCAAGATTACAAGGTCATAGTAGAGTTCACAGATTCTGATCCTGATGGTGATATAAGTGCAAGTGCAAGTGCAAGTCCAACTCGAATTGCCATCTTCTCTCTGAAAACGAGTTCATGGAGACTCGTTGAATGCCAAAAGCATTACGAATTGTTTGGGAACGGGTGCTTAGTAAACGAGACTCTACATTGGTTAGAGGCTAAAAATCGTGAGAAAGATTGTCCTCTAACATCGCAAAACATCTGTTCAAGAATCATCTCTTTTGATCTAACCAAAGAGACATTTCAGGAGGTCGCTACATTAACCAATCTTTTCGACAAAGAATGTGATCATGAGCTCTCTGTGGGAATTGGAACGACAATGGGAAATTGTCTCTTTGTGTATGTTCACGATCGGCACAATCATAATTACAATGTGGGTTTTGCCTATACAATATGGGTGATGAAGGAATATGGGATCGAGAAATCTTGGACTAAACTTGTACAGATTCCTTCAGATATGTTTCGTGGGGGTTTTACATGTTATCCGAAGCCTAAATGGATGTTAGAGAATGACGAAGTTTTGATAATCTTGGAAGAGGATGATATGTATGATGAGGTGGCATTATATAATCCCAAGGAAAATACATTGAGGACTGTTCTTCAGGATTATTGCTTTTGGTGGGGTTCGACATTTTACACTGACACTTTAGTTTCACCTAAAAATATCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

417

Amino Acids

47.87

Weight (kDa)

4.91

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 47	1.9e-10	F-box domain
F-box-like	PF12937	8 - 43	1.4e-09	F-box-like
FBA_3	PF08268	107 - 393	8.3e-14	F-box associated beta propeller domain
FBA_1	PF07734	141 - 382	5.9e-20	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38601 FvH4_7g02841
rosa_chinensis	RchiOBHm_Chr4g0391071
rosa_roxburghii	Rroxscaffold_2G00095950 Rroxscaffold_2G00096000 Rroxscaffold_5G00337600 Rroxscaffold_5G00337640
rosa_rugosa	Rorug02G0430800 Rorug03G0338800
rosa_samantha	Rh4BG037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	165, 459
AccI	GTMKAC	1 cut(s)	429
AciI	CCGC	1 cut(s)	313
AclWI	GGATC	4 cut(s)	4, 194, 575, 1004
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	2 cut(s)	1017, 1166
AfaI	GTAC	2 cut(s)	112, 1023
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflIII	ACRYGT	1 cut(s)	1058
AgsI	TTSAA	3 cut(s)	235, 671, 789
AluBI	AGCT	1 cut(s)	877
AluI	AGCT	1 cut(s)	877
Alw21I	GWGCWC	1 cut(s)	879
Alw26I	GTCTC	5 cut(s)	365, 655, 713, 812, 917
AlwI	GGATC	4 cut(s)	4, 194, 575, 1004
AlwNI	CAGNNNCTG	2 cut(s)	52, 578
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	36
AspA2I	CCTAGG	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	245, 479
AsuHPI	GGTGA	4 cut(s)	19, 602, 991, 1227
AvaII	GGWCC	2 cut(s)	245, 479
AvrII	CCTAGG	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	879
Bbv12I	GWGCWC	1 cut(s)	879
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	3 cut(s)	236, 581, 641
BceAI	ACGGC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	868
BcoDI	GTCTC	5 cut(s)	365, 655, 713, 812, 917
BfaI	CTAG	4 cut(s)	14, 57, 258, 456
BfuAI	ACCTGC	2 cut(s)	165, 459
BisI	GCNGC	1 cut(s)	22
BlnI	CCTAGG	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	23
Bme18I	GGWCC	2 cut(s)	245, 479
BmgT120I	GGNCC	2 cut(s)	245, 479
BmiI	GGNNCC	2 cut(s)	325, 446
BmsI	GCATC	1 cut(s)	451
Bsa29I	ATCGAT	1 cut(s)	301
BsaBI	GATNNNNATC	2 cut(s)	297, 579
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	4 cut(s)	30, 257, 378, 1155
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	2 cut(s)	297, 579
BseCI	ATCGAT	1 cut(s)	301
BseDI	CCNNGG	4 cut(s)	30, 257, 378, 1155
BseGI	GGATG	3 cut(s)	247, 1086, 1126
BseJI	GATNNNNATC	2 cut(s)	297, 579
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	33
BsgI	GTGCAG	1 cut(s)	487
Bsh1285I	CGRYCG	1 cut(s)	934
BshVI	ATCGAT	1 cut(s)	301
BsiEI	CGRYCG	1 cut(s)	934
BsiHKAI	GWGCWC	1 cut(s)	879
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	5 cut(s)	365, 655, 713, 812, 917
BsmI	GAATGC	1 cut(s)	677
Bso31I	GGTCTC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp1407I	TGTACA	1 cut(s)	1021
Bsp143I	GATC	7 cut(s)	9, 199, 580, 805, 868, 931, 996
BspACI	CCGC	1 cut(s)	313
BspDI	ATCGAT	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	871
BspLI	GGNNCC	2 cut(s)	325, 446
BspMI	ACCTGC	2 cut(s)	165, 459
BspPI	GGATC	4 cut(s)	4, 194, 575, 1004
BspTNI	GGTCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	337
BsrGI	TGTACA	1 cut(s)	1021
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	4 cut(s)	30, 257, 378, 1155
BssMI	GATC	7 cut(s)	9, 199, 580, 805, 868, 931, 996
BssT1I	CCWWGG	2 cut(s)	257, 1155
Bst4CI	ACNGT	3 cut(s)	54, 160, 1177
Bst6I	CTCTTC	2 cut(s)	363, 1110
BstAUI	TGTACA	1 cut(s)	1021
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	1 cut(s)	709
BstF5I	GGATG	3 cut(s)	247, 1086, 1126
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	7 cut(s)	12, 202, 583, 808, 871, 934, 999
BstMAI	GTCTC	5 cut(s)	365, 655, 713, 812, 917
BstMBI	GATC	7 cut(s)	9, 199, 580, 805, 868, 931, 996
BstMCI	CGRYCG	1 cut(s)	934
BstNSI	RCATGY	1 cut(s)	1062
BstV1I	GCAGC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	301
BsuTUI	ATCGAT	1 cut(s)	301
BtgZI	GCGATG	1 cut(s)	756
BtsCI	GGATG	3 cut(s)	247, 1086, 1126
BtsIMutI	CAGTG	2 cut(s)	156, 1218
BveI	ACCTGC	2 cut(s)	165, 459
Cac8I	GCNNGC	1 cut(s)	466
CaiI	CAGNNNCTG	2 cut(s)	52, 578
CciI	TCATGA	1 cut(s)	871
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	245, 479
ClaI	ATCGAT	1 cut(s)	301
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	111, 1022
CviAII	CATG	4 cut(s)	105, 657, 872, 1059
CviJI	RGCY	6 cut(s)	24, 61, 336, 740, 877, 1072
CviKI_1	RGCY	6 cut(s)	24, 61, 336, 740, 877, 1072
CviQI	GTAC	2 cut(s)	111, 1022
DdeI	CTNAG	1 cut(s)	709
DpnI	GATC	7 cut(s)	11, 201, 582, 807, 870, 933, 998
DpnII	GATC	7 cut(s)	9, 199, 580, 805, 868, 931, 996
Eam1104I	CTCTTC	2 cut(s)	363, 1110
EarI	CTCTTC	2 cut(s)	363, 1110
Ecl136II	GAGCTC	1 cut(s)	877
Eco130I	CCWWGG	2 cut(s)	257, 1155
Eco24I	GRGCYC	1 cut(s)	879
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	245, 479
Eco53kI	GAGCTC	1 cut(s)	877
Eco57I	CTGAAG	2 cut(s)	1017, 1166
EcoICRI	GAGCTC	1 cut(s)	877
EcoT14I	CCWWGG	2 cut(s)	257, 1155
EcoT38I	GRGCYC	1 cut(s)	879
ErhI	CCWWGG	2 cut(s)	257, 1155
FaeI	CATG	4 cut(s)	108, 660, 875, 1062
FatI	CATG	4 cut(s)	104, 656, 871, 1058
FbaI	TGATCA	1 cut(s)	868
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	3 cut(s)	254, 1093, 1133
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	4 cut(s)	14, 57, 258, 456
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	22
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	4 cut(s)	108, 660, 875, 1062
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	8 cut(s)	210, 484, 533, 575, 663, 721, 792, 1027
HphI	GGTGA	4 cut(s)	19, 602, 991, 1227
Hpy166II	GTNNAC	5 cut(s)	111, 430, 570, 715, 928
Hpy188I	TCNGA	5 cut(s)	34, 580, 645, 1036, 1068
Hpy8I	GTNNAC	5 cut(s)	111, 430, 570, 715, 928
Hpy99I	CGWCG	2 cut(s)	401, 431
HpyAV	CCTTC	3 cut(s)	35, 979, 1041
HpyCH4III	ACNGT	3 cut(s)	54, 160, 1177
HpyCH4V	TGCA	7 cut(s)	99, 330, 453, 468, 602, 608, 614
HpyF3I	CTNAG	1 cut(s)	709
Hsp92II	CATG	4 cut(s)	108, 660, 875, 1062
HspAI	GCGC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	7 cut(s)	9, 199, 580, 805, 868, 931, 996
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	4 cut(s)	14, 57, 258, 456
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	7 cut(s)	11, 201, 582, 807, 870, 933, 998
MboI	GATC	7 cut(s)	9, 199, 580, 805, 868, 931, 996
MboII	GAAGA	7 cut(s)	302, 380, 395, 398, 628, 1127, 1172
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	8 cut(s)	36, 83, 307, 627, 689, 888, 907, 946
MlyI	GAGTC	3 cut(s)	478, 657, 715
MmeI	TCCRAC	2 cut(s)	142, 644
MnlI	CCTC	8 cut(s)	40, 373, 730, 774, 823, 1111, 1129, 1164
MseI	TTAA	5 cut(s)	116, 179, 285, 306, 842
Mva1269I	GAATGC	1 cut(s)	677
NdeII	GATC	7 cut(s)	9, 199, 580, 805, 868, 931, 996
NlaIII	CATG	4 cut(s)	108, 660, 875, 1062
NlaIV	GGNNCC	2 cut(s)	325, 446
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	1062
PagI	TCATGA	1 cut(s)	871
PciI	ACATGT	1 cut(s)	1058
PcsI	WCGNNNNNNNCGW	2 cut(s)	85, 435
PctI	GAATGC	1 cut(s)	677
PfeI	GAWTC	5 cut(s)	210, 533, 575, 792, 1027
PflFI	GACNNNGTC	1 cut(s)	434
PkrI	GCNGC	1 cut(s)	23
Ple19I	CGATCG	1 cut(s)	934
PleI	GAGTC	3 cut(s)	478, 657, 715
PpsI	GAGTC	3 cut(s)	478, 657, 715
PscI	ACATGT	1 cut(s)	1058
Psp124BI	GAGCTC	1 cut(s)	879
PspN4I	GGNNCC	2 cut(s)	325, 446
PspPI	GGNCC	2 cut(s)	245, 479
PstNI	CAGNNNCTG	2 cut(s)	52, 578
PsuI	RGATCY	1 cut(s)	199
PsyI	GACNNNGTC	1 cut(s)	434
PvuI	CGATCG	1 cut(s)	934
RsaI	GTAC	2 cut(s)	112, 1023
RsaNI	GTAC	2 cut(s)	111, 1022
SacI	GAGCTC	1 cut(s)	879
SalI	GTCGAC	1 cut(s)	428
SaqAI	TTAA	5 cut(s)	116, 179, 285, 306, 842
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	7 cut(s)	9, 199, 580, 805, 868, 931, 996
Sau96I	GGNCC	2 cut(s)	245, 479
SchI	GAGTC	3 cut(s)	478, 657, 715
SduI	GDGCHC	1 cut(s)	879
SetI	ASST	9 cut(s)	9, 179, 325, 473, 558, 834, 879, 1140, 1240
SfaNI	GCATC	1 cut(s)	451
SinI	GGWCC	2 cut(s)	245, 479
Sse9I	AATT	8 cut(s)	36, 83, 307, 627, 689, 888, 907, 946
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	4 cut(s)	14, 57, 258, 456
SstI	GAGCTC	1 cut(s)	879
StyI	CCWWGG	2 cut(s)	257, 1155
TaaI	ACNGT	3 cut(s)	54, 160, 1177
TaqI	TCGA	6 cut(s)	301, 429, 625, 855, 999, 1208
TaqII	GACCGA	1 cut(s)	496
TasI	AATT	8 cut(s)	36, 83, 307, 627, 689, 888, 907, 946
TatI	WGTACW	2 cut(s)	110, 1021
TfiI	GAWTC	5 cut(s)	210, 533, 575, 792, 1027
Tru1I	TTAA	5 cut(s)	116, 179, 285, 306, 842
Tru9I	TTAA	5 cut(s)	116, 179, 285, 306, 842
TscAI	CASTG	2 cut(s)	163, 1225
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	5 cut(s)	117, 202, 404, 645, 998
TspGWI	ACGGA	1 cut(s)	415
TspRI	CASTG	2 cut(s)	163, 1225
Tth111I	GACNNNGTC	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	245, 479
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	1 cut(s)	1062
XmaJI	CCTAGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	4 cut(s)	14, 57, 258, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.