Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000695

Physical Location & Seq

Genomic Coordinates Reverse (-)

40252280 .. 40256762

Gene Structure 4483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0338800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCCAATGTCCTCCGAAGTTCAGCGTTGAGGGCACCATTGGCTCCGCTTCCAACAGCTGTCTCGCCCAACTCTCCCAAACCCTTTTTCGTTTCGTTTAGACGACAAAGGCACCCCATTCTCCGCTTCTCTCACTTGCCCTCCCTCCGCCTCCTCGTGCCTTTCGCTTCCCACAACCAGCAGGGTGAAACCGATGCTACTGACACCCTCGATGCCCAGGACCTTGAGGAGGATTCCTTAGACGGGGCAGTTAGTGTGGAAGATAGTACAAGTGATGCTGAAGAAAGTGGTACAAGTGATGATGGGGAAGGTGATGACAAAAAACCTGTTTCAGCCATCATAGCGTCACTACAATTATACAAAGAAGCTTTAGCCAGTAATGATGAATCAAAAGTAGCTGAGATTGAATCTTTTCTAAAATCTGTTGAAGATGAAAAAATAGACCTTGAAAGGAAAGTGGCTTCTTTGTCTGAAGAACTGTCAGCAGAGAAGGTTCGGATTCTGAGGATTAGTGCAGACTTTGATAATTTCCGGAAAAGGACAGATAGAGAACGCATTTCACTGGTAACTAATGCTCAGGGGGAAGTTGTGGAGAGCTTGTTGGGTGTATTGGATAATTTTGAGAGGGCTAAAACCCAGATTAAGGTGGAGACAGAGGGAGAGGAGAAGATCAACAATAGCTATCAGAGCATTTATAAACAGTTTGGAGAAATCTTAAGTTCACTTGGCGTTCTCCCGGTGGAGACAGTGGGGAAGCCCTTTGATCCGTTGGTTAGATACCAAGTTGGCTCGAAATTCAATCAATTACTTGATGAACTTTATCAAGTAGTTAGTCAATTTTGTTCAGGTTTGATGAAGACCTGGATACGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006091 GO:0006520 GO:0006551 GO:0006552 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0015994 GO:0015996 GO:0016054 GO:0016491 GO:0019439 GO:0019752 GO:0022900 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046395 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF

Protein Analysis

291

Amino Acids

32.41

Weight (kDa)

4.78

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GrpE	PF01025	143 - 261	1.2e-20	GrpE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405551
rosa_laevigata	RLG00000000512 RLG00000006283 RLG00000008110 RLG00000008280 RLG00000013435 RLG00000014038 RLG00000019487 RLG00000019783 RLG00000020425 RLG00000022555 RLG00000022693 RLG00000023047 RLG00000027683 RLG00000028941 RLG00000029255 RLG00000033981 RLG00000034375 RLG00000035055 RLG00000036983
rosa_multiflora	Rmu_sc0002070.1_g000038 Rmu_sc0002521.1_g000050 Rmu_sc0002986.1_g000060 Rmu_sc0003002.1_g000067 Rmu_sc0006244.1_g000030 Rmu_sc0009710.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002410 Rroxscaffold_1G00026380 Rroxscaffold_1G00026390 Rroxscaffold_1G00063340 Rroxscaffold_2G00089150 Rroxscaffold_2G00114500 Rroxscaffold_2G00155770 Rroxscaffold_3G00224480 Rroxscaffold_3G00243690 Rroxscaffold_3G00251260 Rroxscaffold_4G00298200 Rroxscaffold_4G00327440 Rroxscaffold_7G00192530
rosa_rugosa	Rorug01G0052300 Rorug01G0094500 Rorug03G0152700 Rorug03G0245200 Rorug03G0338800 Rorug03G0338900 Rorug04G0045100 Rorug04G0168400 Rorug04G0291600 Rorug07G0163300 Rorug07G0349700
rosa_samantha	Rh1AG146400 Rh1BG098400 Rh2CG327400 Rh3BG286300 Rh3BG323300 Rh4AG085300 Rh4AG137800 Rh4CG008600 Rh4CG032900 Rh4CG092500 Rh4CG180400 Rh4CG231200 Rh4CG274400 Rh4CG304800 Rh5AG384900 Rh5BG344700 Rh5CG355300 Rh6AG151000 Rh6BG302500 Rh6DG135900 Rh6DG138700 Rh6DG206300 Rh6DG319500 Rh7BG412300 Rh7CG476300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AccB1I	GGYRCC	2 cut(s)	34, 111
AccIII	TCCGGA	1 cut(s)	531
AciI	CCGC	3 cut(s)	47, 124, 148
AclWI	GGATC	1 cut(s)	758
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	794
AcuI	CTGAAG	2 cut(s)	300, 492
AfaI	GTAC	2 cut(s)	268, 292
AfiI	CCNNNNNNNGG	4 cut(s)	229, 243, 643, 867
AflII	CTTAAG	1 cut(s)	715
AgsI	TTSAA	4 cut(s)	407, 428, 449, 799
AjnI	CCWGG	2 cut(s)	216, 860
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	5 cut(s)	59, 368, 398, 597, 681
AluI	AGCT	5 cut(s)	59, 368, 398, 597, 681
Alw26I	GTCTC	3 cut(s)	67, 644, 737
AlwI	GGATC	1 cut(s)	758
Aor13HI	TCCGGA	1 cut(s)	531
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	794
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	2 cut(s)	197, 323
AvaII	GGWCC	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	34, 111
BauI	CACGAG	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	863
BccI	CCATC	2 cut(s)	296, 344
BciT130I	CCWGG	2 cut(s)	218, 862
BciVI	GTATCC	1 cut(s)	858
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	3 cut(s)	67, 644, 737
BfrI	CTTAAG	1 cut(s)	715
BfuI	GTATCC	1 cut(s)	858
Bme1390I	CCNGG	3 cut(s)	218, 737, 862
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	3 cut(s)	36, 45, 113
BmrFI	CCNGG	3 cut(s)	218, 737, 862
BmsI	GCATC	3 cut(s)	184, 202, 265
BpiI	GAAGAC	1 cut(s)	863
Bpu10I	CCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	737
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	531
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 584, 614
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 243, 643, 867
Bse1I	ACTGG	2 cut(s)	375, 567
BseAI	TCCGGA	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	218, 862
BseDI	CCNNGG	1 cut(s)	216
BseLI	CCNNNNNNNGG	4 cut(s)	229, 243, 643, 867
BseMII	CTCAG	3 cut(s)	390, 494, 590
BseNI	ACTGG	2 cut(s)	375, 567
BseRI	GAGGAG	3 cut(s)	143, 242, 677
BseSI	GKGCMC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	34, 111
BsiSI	CCGG	2 cut(s)	532, 737
BslI	CCNNNNNNNGG	4 cut(s)	229, 243, 643, 867
BsmAI	GTCTC	3 cut(s)	67, 644, 737
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	531
Bsp143I	GATC	2 cut(s)	669, 763
BspACI	CCGC	3 cut(s)	47, 124, 148
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	391, 495, 589
BspEI	TCCGGA	1 cut(s)	531
BspLI	GGNNCC	3 cut(s)	36, 45, 113
BspPI	GGATC	1 cut(s)	758
BspT107I	GGYRCC	2 cut(s)	34, 111
BspTI	CTTAAG	1 cut(s)	715
BsrI	ACTGG	2 cut(s)	375, 567
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	2 cut(s)	669, 763
BssSI	CACGAG	1 cut(s)	155
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	218, 862
Bst4CI	ACNGT	4 cut(s)	480, 702, 748, 870
BstAFI	CTTAAG	1 cut(s)	715
BstDEI	CTNAG	4 cut(s)	238, 399, 503, 576
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstKTI	GATC	2 cut(s)	672, 766
BstMAI	GTCTC	3 cut(s)	67, 644, 737
BstMBI	GATC	2 cut(s)	669, 763
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 41, 341, 687
BstNI	CCWGG	2 cut(s)	218, 862
BstSCI	CCNGG	3 cut(s)	216, 735, 860
BstSLI	GKGCMC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	863
BsuI	GTATCC	1 cut(s)	858
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	560, 753
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	267, 291
CviQI	GTAC	2 cut(s)	267, 291
DdeI	CTNAG	4 cut(s)	238, 399, 503, 576
DpnI	GATC	2 cut(s)	671, 765
DpnII	GATC	2 cut(s)	669, 763
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	300, 492
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	216, 860
FaiI	YATR	3 cut(s)	341, 358, 696
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	532, 737
HgaI	GACGC	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	4 cut(s)	233, 386, 407, 499
HpaII	CCGG	2 cut(s)	532, 737
HphI	GGTGA	2 cut(s)	197, 323
Hpy166II	GTNNAC	1 cut(s)	722
Hpy188I	TCNGA	5 cut(s)	17, 472, 498, 504, 687
Hpy188III	TCNNGA	1 cut(s)	532
Hpy8I	GTNNAC	1 cut(s)	722
HpyAV	CCTTC	2 cut(s)	302, 484
HpyCH4III	ACNGT	4 cut(s)	480, 702, 748, 870
HpyCH4V	TGCA	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 41, 341, 687
HpyF3I	CTNAG	4 cut(s)	238, 399, 503, 576
Kpn2I	TCCGGA	1 cut(s)	531
Kzo9I	GATC	2 cut(s)	669, 763
LmnI	GCTCC	1 cut(s)	49
LweI	GCATC	3 cut(s)	184, 202, 265
MaeIII	GTNAC	2 cut(s)	345, 565
MalI	GATC	2 cut(s)	671, 765
MboI	GATC	2 cut(s)	669, 763
MboII	GAAGA	6 cut(s)	272, 293, 440, 485, 679, 868
MhlI	GDGCHC	1 cut(s)	37
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	353, 526, 616, 794, 803, 836
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	77
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	531
MroXI	GAANNNNTTC	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	642, 716, 874
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	59
MspCI	CTTAAG	1 cut(s)	715
MspI	CCGG	2 cut(s)	532, 737
MspR9I	CCNGG	3 cut(s)	218, 737, 862
MvaI	CCWGG	2 cut(s)	218, 862
MwoI	GCNNNNNNNGC	4 cut(s)	32, 41, 341, 687
NciI	CCSGG	1 cut(s)	737
NdeII	GATC	2 cut(s)	669, 763
NlaIV	GGNNCC	3 cut(s)	36, 45, 113
NmuCI	GTSAC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	233, 386, 407, 499
PpuMI	RGGWCCY	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	696
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	216, 860
PspGI	CCWGG	2 cut(s)	216, 860
PspN4I	GGNNCC	3 cut(s)	36, 45, 113
PspPI	GGNCC	1 cut(s)	220
PspPPI	RGGWCCY	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	2 cut(s)	268, 292
RsaNI	GTAC	2 cut(s)	267, 291
SaqAI	TTAA	3 cut(s)	642, 716, 874
Sau3AI	GATC	2 cut(s)	669, 763
Sau96I	GGNCC	1 cut(s)	220
ScrFI	CCNGG	3 cut(s)	218, 737, 862
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	3 cut(s)	184, 202, 265
SinI	GGWCC	1 cut(s)	220
SmlI	CTYRAG	2 cut(s)	224, 715
SmoI	CTYRAG	2 cut(s)	224, 715
Sse9I	AATT	6 cut(s)	353, 526, 616, 794, 803, 836
SsiI	CCGC	3 cut(s)	47, 124, 148
StyD4I	CCNGG	3 cut(s)	216, 735, 860
TaaI	ACNGT	4 cut(s)	480, 702, 748, 870
TaqI	TCGA	2 cut(s)	210, 791
TasI	AATT	6 cut(s)	353, 526, 616, 794, 803, 836
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	4 cut(s)	233, 386, 407, 499
Tru1I	TTAA	3 cut(s)	642, 716, 874
Tru9I	TTAA	3 cut(s)	642, 716, 874
TscAI	CASTG	2 cut(s)	567, 753
TseFI	GTSAC	1 cut(s)	345
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	4 cut(s)	399, 447, 828, 869
TspGWI	ACGGA	1 cut(s)	756
TspRI	CASTG	2 cut(s)	567, 753
Vha464I	CTTAAG	1 cut(s)	715
VpaK11BI	GGWCC	1 cut(s)	220
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	794
XmnI	GAANNNNTTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.