Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000695

Physical Location & Seq

Genomic Coordinates Reverse (-)

17215665 .. 17216867

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGGTTGGAAGCTAAATTACAAGAAGTGAGATCCACTCCCATTGAGTCGCCTCTTGGAGGGCACATTAGCAAGGATGTTGGTTCTGGACAAGCGGTGGAGGAACCAGCTGCCGTAGAGGTTCAGGAGAGGGCTATTGAGTTGGTTGAAGTCACACAACAGAAACAACCTGTGAAGGCTGGTAAGGGTTTGAAGAAGAGGAAAAGGGTAGTAGCCATTGATGAAGAGGAGTTATTTATCGACTTCAAGAAGCTGCTGAAAGATTACCCTGCAGCGTGCAAGTGCTTGTGGTTGTGGGCGAAAGACAATTTGGCAAATGGGAAGACAATCTCCTTTCAGATGGAAGACAAACTTTTTGGCATCAACAAAAAGCAATATGTGTTTAAGGGAGATATTCATGCCTTGTGTACCATGGGTGAATTGTCGGGTGGAGTGATCTGCATGCACATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 Transposase_24

Protein Analysis

152

Amino Acids

16.86

Weight (kDa)

8.3

Isoelectric Point (pI)

60.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405551
rosa_laevigata	RLG00000000512 RLG00000006283 RLG00000008110 RLG00000008280 RLG00000013435 RLG00000014038 RLG00000019487 RLG00000019783 RLG00000020425 RLG00000022555 RLG00000022693 RLG00000023047 RLG00000027683 RLG00000028941 RLG00000029255 RLG00000033981 RLG00000034375 RLG00000035055 RLG00000036983
rosa_multiflora	Rmu_sc0002070.1_g000038 Rmu_sc0002521.1_g000050 Rmu_sc0002986.1_g000060 Rmu_sc0003002.1_g000067 Rmu_sc0006244.1_g000030 Rmu_sc0009710.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002410 Rroxscaffold_1G00026380 Rroxscaffold_1G00026390 Rroxscaffold_1G00063340 Rroxscaffold_2G00089150 Rroxscaffold_2G00114500 Rroxscaffold_2G00155770 Rroxscaffold_3G00224480 Rroxscaffold_3G00243690 Rroxscaffold_3G00251260 Rroxscaffold_4G00298200 Rroxscaffold_4G00327440 Rroxscaffold_7G00192530
rosa_rugosa	Rorug01G0052300 Rorug01G0094500 Rorug03G0152700 Rorug03G0245200 Rorug03G0338800 Rorug03G0338900 Rorug04G0045100 Rorug04G0168400 Rorug04G0291600 Rorug07G0163300 Rorug07G0349700
rosa_samantha	Rh1AG146400 Rh1BG098400 Rh2CG327400 Rh3BG286300 Rh3BG323300 Rh4AG085300 Rh4AG137800 Rh4CG008600 Rh4CG032900 Rh4CG092500 Rh4CG180400 Rh4CG231200 Rh4CG274400 Rh4CG304800 Rh5AG384900 Rh5BG344700 Rh5CG355300 Rh6AG151000 Rh6BG302500 Rh6DG135900 Rh6DG138700 Rh6DG206300 Rh6DG319500 Rh7BG412300 Rh7CG476300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	3 cut(s)	149, 193, 247
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	3 cut(s)	14, 110, 253
AluI	AGCT	3 cut(s)	14, 110, 253
AlwI	GGATC	1 cut(s)	27
ApeKI	GCWGC	3 cut(s)	110, 253, 272
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AsuHPI	GGTGA	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	66
BarI	GAAGNNNNNNTAC	1 cut(s)	35
BbsI	GAAGAC	2 cut(s)	329, 351
BbvI	GCAGC	3 cut(s)	97, 240, 284
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	3 cut(s)	111, 254, 273
BlsI	GCNGC	3 cut(s)	112, 255, 274
BmiI	GGNNCC	1 cut(s)	105
BmsI	GCATC	1 cut(s)	369
BpiI	GAAGAC	2 cut(s)	329, 351
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
BsaJI	CCNNGG	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	66
BseXI	GCAGC	3 cut(s)	97, 240, 284
BslI	CCNNNNNNNGG	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	32, 435
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	2 cut(s)	32, 435
BssT1I	CCWWGG	1 cut(s)	411
Bst6I	CTCTTC	2 cut(s)	191, 219
BstC8I	GCNNGC	2 cut(s)	277, 443
BstDSI	CCRYGG	1 cut(s)	411
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	35, 438
BstMBI	GATC	2 cut(s)	32, 435
BstNSI	RCATGY	2 cut(s)	445, 451
BstSFI	CTRYAG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	97, 240, 284
BstV2I	GAAGAC	2 cut(s)	329, 351
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	2 cut(s)	277, 443
Csp6I	GTAC	1 cut(s)	408
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	4 cut(s)	398, 412, 442, 448
CviJI	RGCY	6 cut(s)	14, 110, 134, 179, 215, 253
CviKI_1	RGCY	6 cut(s)	14, 110, 134, 179, 215, 253
CviQI	GTAC	1 cut(s)	408
DpnI	GATC	2 cut(s)	34, 437
DpnII	GATC	2 cut(s)	32, 435
Eam1104I	CTCTTC	2 cut(s)	191, 219
EarI	CTCTTC	2 cut(s)	191, 219
Eco130I	CCWWGG	1 cut(s)	411
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	4 cut(s)	401, 415, 445, 451
FaiI	YATR	5 cut(s)	378, 399, 413, 443, 449
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	4 cut(s)	397, 411, 441, 447
Fnu4HI	GCNGC	3 cut(s)	111, 254, 273
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	111, 254, 273
GluI	GCNGC	3 cut(s)	111, 254, 273
Hin1II	CATG	4 cut(s)	401, 415, 445, 451
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	3 cut(s)	87, 125, 247
Hpy8I	GTNNAC	1 cut(s)	408
HpyAV	CCTTC	1 cut(s)	169
HpyCH4V	TGCA	4 cut(s)	272, 279, 441, 445
Hsp92II	CATG	4 cut(s)	401, 415, 445, 451
Kzo9I	GATC	2 cut(s)	32, 435
LpnPI	CCDG	6 cut(s)	72, 110, 120, 165, 183, 282
Lsp1109I	GCAGC	3 cut(s)	97, 240, 284
LweI	GCATC	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	2 cut(s)	34, 437
MboI	GATC	2 cut(s)	32, 435
MboII	GAAGA	5 cut(s)	205, 208, 236, 334, 356
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	3 cut(s)	17, 307, 419
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	7 cut(s)	53, 63, 94, 112, 123, 192, 220
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	2 cut(s)	32, 435
NlaIII	CATG	4 cut(s)	401, 415, 445, 451
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	2 cut(s)	445, 451
PaeI	GCATGC	1 cut(s)	445
PciI	ACATGT	1 cut(s)	447
PkrI	GCNGC	3 cut(s)	112, 255, 274
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PscI	ACATGT	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	3 cut(s)	111, 254, 273
Sau3AI	GATC	2 cut(s)	32, 435
SchI	GAGTC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	6 cut(s)	8, 16, 112, 123, 172, 255
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	446
SphI	GCATGC	1 cut(s)	445
Sse9I	AATT	3 cut(s)	17, 307, 419
SsiI	CCGC	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	411
TaqI	TCGA	1 cut(s)	240
TasI	AATT	3 cut(s)	17, 307, 419
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	3 cut(s)	110, 253, 272
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	2 cut(s)	237, 386
XagI	CCTNNNNNAGG	1 cut(s)	57
XceI	RCATGY	2 cut(s)	445, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.