RchiOBHm_Chr4g0405551

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000695
Physical Location & Seq
Reverse (-)
26155385 .. 26157241
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37703

Sequence Viewer

Length: 1275 bp
ATGGAAAGACTTAGGGATGAAGGAGAAGACCAATGTAGTTGCTCCAACTTGAAGGAGAAAACCACAAAGGAAAAGCCTGAGGAGGTTGCTAACGCTGCAAAAAAGCGCTTAGAGTTAGTTGATGACATAGATGAGAAAATAGAAGAACAAAATGGCAAAGGGTTGCCGGTGGAAGTGGAAGCTGGTATAGAAGTGGCAGCTACTATAGAAGTGGCAGTTGCTATAGAGCATGTTCATGCTGCTCCTATAGAGGTTCATGATACTCCTATTAAGTTGGTTGAAGTTACACAGGAGGAACTGAGGCCGTTAGAGTGCAAATTGGCTTTAGGATCAGTGGACAATATTGTTGCCATTGCAAGCGTTGTTGAAGTCCAAGATGATAAGTGCGCCAATCAAACAGTTCATGGTTGTCCTTTGGGAGAAGGTAATGTGCGAGTGTCGATCATTCGTCCACTTGTTCCTGAAGTTAAGCTTTCATTCCTAGTTAATGATGAGATAGTGTCTATCAAAGATGCTGTTGGGACTTATATCGCTTGGCCAAGGAACCTCATACTTCAATCCCCTCCCCAAACTGACAAGAAACAACCAAATAAGGCTGCAGGTAAGGGTTCGAAGAAAAGGAAAAGGCAAACAGCTGGTGATGAAGAGGAGTATATTGACTTGAAGAAGCTACCAAAAGATTACCCTTCACCTTTAAAGTGCTTGTGGTTGTGGGGGAGAGACGCACTAGCTGATGGGAAGACAATCTCTTTCATGCTAACAGATAAAGTATTTGGGATCAATAGGAAGCAATATCTGTATAAGGGAGACATTCATGCATTGTGTACCATGAGTGAACTATCAGGCGACGTCATCTGCATGTATATGTGCTATTTGCATGAAGTATTGAAGAAAGCAAAGATGTCGGACATGGTTGGCTTTGTGGACTCTCATCAGATTAGAGCAAGTAATCCAATGGAAAGGTCGCGTCATTTATCAGTTAGGTTCACAAATGCAAAGAAATGCCAGATTTTTATGTTGCCATATAATGCAGGTAAGTATTGGATGTTAATTGTTGTCAACCCGGAGGAAGAAATTATCTACTTCATGGATCCACTACGGCGTCGACTAGTTTGCGGAGAATGGCAAATCATTGTGGAGAATGGGATCAAAATTTACAATGCTCAGAGAAATCGATCTAGCCGGAAATCAATAACGTGGCACAATATGGGGGGTATTCCGGTGCAACAAGGTGACAAGGATTGTGGGATATTCATCATGCAGTACATGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

424

Amino Acids

47.96

Weight (kDa)

6.54

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 102 - 185 3.2e-09 Domain of unknown function (DUF8039)
Peptidase_C48 PF02902 284 - 423 8.2e-07 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 852
Acc36I ACCTGC 2 cut(s) 590, 1022
AccI GTMKAC 1 cut(s) 1105
AccII CGCG 1 cut(s) 967
AciI CCGC 1 cut(s) 1116
AclWI GGATC 5 cut(s) 337, 785, 1085, 1098, 1154
AcoI YGGCCR 1 cut(s) 536
AcsI RAATTY 1 cut(s) 1152
AcuI CTGAAG 1 cut(s) 483
AcyI GRCGYC 2 cut(s) 849, 1102
AfaI GTAC 2 cut(s) 826, 1265
AfeI AGCGCT 1 cut(s) 107
AgsI TTSAA 6 cut(s) 52, 281, 368, 557, 664, 889
AhlI ACTAGT 1 cut(s) 1108
AluBI AGCT 6 cut(s) 182, 200, 472, 635, 670, 731
AluI AGCT 6 cut(s) 182, 200, 472, 635, 670, 731
Alw26I GTCTC 2 cut(s) 714, 801
AlwI GGATC 5 cut(s) 337, 785, 1085, 1098, 1154
Aor51HI AGCGCT 1 cut(s) 107
AoxI GGCC 2 cut(s) 302, 536
ApeKI GCWGC 4 cut(s) 95, 197, 239, 596
ApoI RAATTY 1 cut(s) 1152
AspLEI GCGC 2 cut(s) 108, 389
AsuC2I CCSGG 1 cut(s) 1064
AsuHPI GGTGA 3 cut(s) 650, 681, 1244
AsuII TTCGAA 1 cut(s) 611
AxyI CCTNAGG 1 cut(s) 78
BalI TGGCCA 1 cut(s) 538
BamHI GGATCC 1 cut(s) 1090
BbsI GAAGAC 2 cut(s) 33, 746
BbvI GCAGC 4 cut(s) 82, 209, 226, 583
BccI CCATC 1 cut(s) 728
BceAI ACGGC 2 cut(s) 289, 1115
BcgI CGANNNNNNTGC 4 cut(s) 885, 919, 1095, 1129
BcnI CCSGG 1 cut(s) 1064
BcoDI GTCTC 2 cut(s) 714, 801
BcuI ACTAGT 1 cut(s) 1108
BfaI CTAG 4 cut(s) 482, 728, 1109, 1179
BfmI CTRYAG 4 cut(s) 204, 222, 246, 597
BfoI RGCGCY 1 cut(s) 109
BfuAI ACCTGC 2 cut(s) 590, 1022
BisI GCNGC 4 cut(s) 96, 198, 240, 597
BlsI GCNGC 4 cut(s) 97, 199, 241, 598
Bme1390I CCNGG 1 cut(s) 1064
BmiI GGNNCC 2 cut(s) 545, 1092
BmrFI CCNGG 1 cut(s) 1064
BmsI GCATC 1 cut(s) 502
BpiI GAAGAC 2 cut(s) 33, 746
Bpu14I TTCGAA 1 cut(s) 611
BpuMI CCSGG 1 cut(s) 1064
Bsa29I ATCGAT 1 cut(s) 1174
BsaBI GATNNNNATC 1 cut(s) 1253
BsaHI GRCGYC 2 cut(s) 849, 1102
BsaJI CCNNGG 1 cut(s) 539
BsaWI WCCGGW 1 cut(s) 1219
Bse118I RCCGGY 1 cut(s) 166
Bse21I CCTNAGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 1253
BseCI ATCGAT 1 cut(s) 1174
BseDI CCNNGG 1 cut(s) 539
BseGI GGATG 2 cut(s) 22, 1050
BseJI GATNNNNATC 1 cut(s) 1253
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 3 cut(s) 69, 290, 1178
BseRI GAGGAG 2 cut(s) 95, 662
BseXI GCAGC 4 cut(s) 82, 209, 226, 583
Bsh1236I CGCG 1 cut(s) 967
BshFI GGCC 2 cut(s) 304, 538
BshVI ATCGAT 1 cut(s) 1174
BsiSI CCGG 4 cut(s) 167, 1064, 1183, 1220
BslFI GGGAC 1 cut(s) 535
BsmAI GTCTC 2 cut(s) 714, 801
BsmBI CGTCTC 1 cut(s) 714
BsmFI GGGAC 1 cut(s) 535
BsnI GGCC 2 cut(s) 304, 538
Bsp119I TTCGAA 1 cut(s) 611
Bsp143I GATC 6 cut(s) 329, 441, 777, 1090, 1146, 1175
BspACI CCGC 1 cut(s) 1116
BspANI GGCC 2 cut(s) 304, 538
BspCNI CTCAG 3 cut(s) 70, 291, 1177
BspDI ATCGAT 1 cut(s) 1174
BspFNI CGCG 1 cut(s) 967
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 545, 1092
BspMAI CTGCAG 1 cut(s) 601
BspMI ACCTGC 2 cut(s) 590, 1022
BspPI GGATC 5 cut(s) 337, 785, 1085, 1098, 1154
BspT104I TTCGAA 1 cut(s) 611
BsrDI GCAATG 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 539
BssMI GATC 6 cut(s) 329, 441, 777, 1090, 1146, 1175
BssNI GRCGYC 2 cut(s) 849, 1102
BssT1I CCWWGG 1 cut(s) 539
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 639
BstACI GRCGYC 2 cut(s) 849, 1102
BstBI TTCGAA 1 cut(s) 611
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 5 cut(s) 11, 78, 109, 299, 1164
BstF5I GGATG 2 cut(s) 22, 1050
BstFNI CGCG 1 cut(s) 967
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 2 cut(s) 108, 389
BstKTI GATC 6 cut(s) 332, 444, 780, 1093, 1149, 1178
BstMAI GTCTC 2 cut(s) 714, 801
BstMBI GATC 6 cut(s) 329, 441, 777, 1090, 1146, 1175
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNSI RCATGY 2 cut(s) 233, 862
BstSCI CCNGG 1 cut(s) 1062
BstSFI CTRYAG 4 cut(s) 204, 222, 246, 597
BstUI CGCG 1 cut(s) 967
BstV1I GCAGC 4 cut(s) 82, 209, 226, 583
BstV2I GAAGAC 2 cut(s) 33, 746
BstX2I RGATCY 1 cut(s) 1090
BstYI RGATCY 1 cut(s) 1090
Bsu15I ATCGAT 1 cut(s) 1174
Bsu36I CCTNAGG 1 cut(s) 78
BsuRI GGCC 2 cut(s) 304, 538
BsuTUI ATCGAT 1 cut(s) 1174
BtsCI GGATG 2 cut(s) 22, 1050
BtsIMutI CAGTG 1 cut(s) 339
BveI ACCTGC 2 cut(s) 590, 1022
Cac8I GCNNGC 1 cut(s) 358
CciI TCATGA 1 cut(s) 256
CfoI GCGC 2 cut(s) 108, 389
Cfr10I RCCGGY 1 cut(s) 166
ClaI ATCGAT 1 cut(s) 1174
CseI GACGC 3 cut(s) 731, 956, 1091
Csp6I GTAC 2 cut(s) 825, 1264
CspCI CAANNNNNGTGG 2 cut(s) 1225, 1260
CviQI GTAC 2 cut(s) 825, 1264
DdeI CTNAG 5 cut(s) 11, 78, 109, 299, 1164
DpnI GATC 6 cut(s) 331, 443, 779, 1092, 1148, 1177
DpnII GATC 6 cut(s) 329, 441, 777, 1090, 1146, 1175
DraI TTTAAA 1 cut(s) 696
EaeI YGGCCR 1 cut(s) 536
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco130I CCWWGG 1 cut(s) 539
Eco47III AGCGCT 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 483
Eco81I CCTNAGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 539
EcoT22I ATGCAT 1 cut(s) 820
ErhI CCWWGG 1 cut(s) 539
Esp3I CGTCTC 1 cut(s) 714
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FaqI GGGAC 1 cut(s) 535
FblI GTMKAC 1 cut(s) 1105
Fnu4HI GCNGC 4 cut(s) 96, 198, 240, 597
FokI GGATG 2 cut(s) 29, 1057
Fsp4HI GCNGC 4 cut(s) 96, 198, 240, 597
FspBI CTAG 4 cut(s) 482, 728, 1109, 1179
GlaI GCGC 2 cut(s) 107, 388
GluI GCNGC 4 cut(s) 96, 198, 240, 597
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 2 cut(s) 304, 538
HapII CCGG 4 cut(s) 167, 1064, 1183, 1220
HgaI GACGC 3 cut(s) 731, 956, 1091
HhaI GCGC 2 cut(s) 108, 389
Hin1I GRCGYC 2 cut(s) 849, 1102
Hin6I GCGC 2 cut(s) 106, 387
HinP1I GCGC 2 cut(s) 106, 387
HincII GTYRAC 2 cut(s) 1060, 1106
HindII GTYRAC 2 cut(s) 1060, 1106
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 1 cut(s) 926
HpaII CCGG 4 cut(s) 167, 1064, 1183, 1220
HphI GGTGA 3 cut(s) 650, 681, 1244
Hpy166II GTNNAC 8 cut(s) 337, 452, 825, 836, 925, 987, 1060, 1106
Hpy188I TCNGA 3 cut(s) 907, 936, 1167
Hpy188III TCNNGA 2 cut(s) 257, 461
Hpy8I GTNNAC 8 cut(s) 337, 452, 825, 836, 925, 987, 1060, 1106
Hpy99I CGWCG 2 cut(s) 851, 1107
HpyAV CCTTC 4 cut(s) 14, 46, 416, 696
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 2 cut(s) 849, 1196
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 5 cut(s) 11, 78, 109, 299, 1164
HpySE526I ACGT 2 cut(s) 849, 1196
Hsp92I GRCGYC 2 cut(s) 849, 1102
HspAI GCGC 2 cut(s) 106, 387
Kzo9I GATC 6 cut(s) 329, 441, 777, 1090, 1146, 1175
LmnI GCTCC 2 cut(s) 47, 247
Lsp1109I GCAGC 4 cut(s) 82, 209, 226, 583
LweI GCATC 1 cut(s) 502
MaeI CTAG 4 cut(s) 482, 728, 1109, 1179
MaeII ACGT 2 cut(s) 849, 1196
MaeIII GTNAC 2 cut(s) 283, 1232
MalI GATC 6 cut(s) 331, 443, 779, 1092, 1148, 1177
MboI GATC 6 cut(s) 329, 441, 777, 1090, 1146, 1175
MboII GAAGA 8 cut(s) 38, 155, 625, 656, 676, 751, 901, 1082
MflI RGATCY 1 cut(s) 1090
MlsI TGGCCA 1 cut(s) 538
MluCI AATT 4 cut(s) 317, 1050, 1074, 1152
MluNI TGGCCA 1 cut(s) 538
MlyI GAGTC 1 cut(s) 920
MmeI TCCRAC 2 cut(s) 69, 885
MnlI CCTC 9 cut(s) 73, 76, 244, 286, 294, 557, 573, 640, 1060
Mox20I TGGCCA 1 cut(s) 538
Mph1103I ATGCAT 1 cut(s) 820
MscI TGGCCA 1 cut(s) 538
MseI TTAA 5 cut(s) 270, 468, 486, 695, 1049
MslI CAYNNNNRTG 3 cut(s) 234, 857, 863
Msp20I TGGCCA 1 cut(s) 538
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 4 cut(s) 167, 1064, 1183, 1220
MspR9I CCNGG 1 cut(s) 1064
MvnI CGCG 1 cut(s) 967
MwoI GCNNNNNNNGC 1 cut(s) 95
NciI CCSGG 1 cut(s) 1064
NdeII GATC 6 cut(s) 329, 441, 777, 1090, 1146, 1175
NlaIV GGNNCC 2 cut(s) 545, 1092
NmuCI GTSAC 1 cut(s) 1232
NsiI ATGCAT 1 cut(s) 820
NspI RCATGY 2 cut(s) 233, 862
NspV TTCGAA 1 cut(s) 611
PagI TCATGA 1 cut(s) 256
PkrI GCNGC 4 cut(s) 97, 199, 241, 598
PleI GAGTC 1 cut(s) 920
PpsI GAGTC 1 cut(s) 920
PspN4I GGNNCC 2 cut(s) 545, 1092
PstI CTGCAG 1 cut(s) 601
PsuI RGATCY 1 cut(s) 1090
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 2 cut(s) 826, 1265
RsaNI GTAC 2 cut(s) 825, 1264
RseI CAYNNNNRTG 3 cut(s) 234, 857, 863
SalI GTCGAC 1 cut(s) 1104
SaqAI TTAA 5 cut(s) 270, 468, 486, 695, 1049
SatI GCNGC 4 cut(s) 96, 198, 240, 597
Sau3AI GATC 6 cut(s) 329, 441, 777, 1090, 1146, 1175
SchI GAGTC 1 cut(s) 920
ScrFI CCNGG 1 cut(s) 1064
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 4 cut(s) 204, 222, 246, 597
SfuI TTCGAA 1 cut(s) 611
SmiMI CAYNNNNRTG 3 cut(s) 234, 857, 863
SpeI ACTAGT 1 cut(s) 1108
Sse9I AATT 4 cut(s) 317, 1050, 1074, 1152
SsiI CCGC 1 cut(s) 1116
SspI AATATT 1 cut(s) 343
SspMI CTAG 4 cut(s) 482, 728, 1109, 1179
StyD4I CCNGG 1 cut(s) 1062
StyI CCWWGG 1 cut(s) 539
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 2 cut(s) 852, 1199
TaqI TCGA 4 cut(s) 440, 611, 1105, 1174
TasI AATT 4 cut(s) 317, 1050, 1074, 1152
TatI WGTACW 1 cut(s) 1263
Tru1I TTAA 5 cut(s) 270, 468, 486, 695, 1049
Tru9I TTAA 5 cut(s) 270, 468, 486, 695, 1049
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 1 cut(s) 1232
TseI GCWGC 4 cut(s) 95, 197, 239, 596
Tsp45I GTSAC 1 cut(s) 1232
TspRI CASTG 1 cut(s) 339
XapI RAATTY 1 cut(s) 1152
XceI RCATGY 2 cut(s) 233, 862
XmiI GTMKAC 1 cut(s) 1105
XspI CTAG 4 cut(s) 482, 728, 1109, 1179
ZraI GACGTC 1 cut(s) 850
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.