Rroxscaffold_4G00298200

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000695
Physical Location & Seq
Reverse (-)
18068256 .. 18069372
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298200.1

Sequence Viewer

Length: 672 bp
ATGAGGTTGGAAGCTAAATTACAGGAAGTGAGATCCACTCCCATTGAGTCACCTCTTGGAGGGCACATTAGCAAGGATGTTGGTTCTGGACAAGGTAGCTGCTCCAATTTGCTTGGAGAAGTGTGTAAAGCGAAGGCTGATGAGATTGTTGTCGCTGCAAAGAAGCGATTGGATTTGGTGGATGACATTGTGAAGGAAGCAGAAAAGGAAAGGGTTATAGAGCTGCGAACTCAAGGAGGCGAGTGCAAATTGGCTTTAGGAGACATTGGCAATATTGTTGCCATTGCGAGGCTTGTTGAAGTCGACGCCGACTCCGCCAACTCCGACAATTCATGGTATGAGATGGTTCTTGTCAAAGATGTTGTGGGGTCTTTTGTTGCTTGGCCGAGGAATCTTATAAAACAACCTGTGAAGGCTGGTAAGGGTTTGCAGAAGAGGAAAAGGGTAGTAGACGTTGATGAAGAGGAGTTATTTATTGATTTCAAGAAGCTTCCAAAAGATTACCCTACAGCGTGCAAGTGCTTGTGGTTGTGGGCGAAAGACAATTTGGCAAATAGGAAGACAATCTCCTTTCGATGGAAGACAAAGATTTTGGCATTAACAAAAAGCAATATGTGTTTAAGGGAGATATTCATGCATTGTGTACCATGGGTGAATTGTCGGGTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

223

Amino Acids

25.04

Weight (kDa)

8.72

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
AccI GTMKAC 2 cut(s) 303, 450
AciI CCGC 1 cut(s) 315
AclWI GGATC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 1 cut(s) 645
AfiI CCNNNNNNNGG 3 cut(s) 59, 288, 576
AgsI TTSAA 2 cut(s) 299, 484
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 4 cut(s) 14, 99, 223, 490
AluI AGCT 4 cut(s) 14, 99, 223, 490
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 1 cut(s) 27
AoxI GGCC 1 cut(s) 383
ApeKI GCWGC 3 cut(s) 99, 155, 223
ArsI GACNNNNNNTTYG 2 cut(s) 574, 606
AsuHPI GGTGA 2 cut(s) 42, 664
BaeGI GKGCMC 1 cut(s) 66
BarI GAAGNNNNNNTAC 1 cut(s) 35
BbsI GAAGAC 2 cut(s) 566, 587
BbvI GCAGC 3 cut(s) 86, 142, 210
BccI CCATC 2 cut(s) 337, 570
BcoDI GTCTC 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 507
BisI GCNGC 3 cut(s) 100, 156, 224
BlsI GCNGC 3 cut(s) 101, 157, 225
BpiI GAAGAC 2 cut(s) 566, 587
BplI GAGNNNNNCTC 2 cut(s) 22, 54
BpuEI CTTGAG 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 386, 647
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 288, 576
Bse3DI GCAATG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 386, 647
BseGI GGATG 2 cut(s) 82, 187
BseLI CCNNNNNNNGG 3 cut(s) 59, 288, 576
BseMI GCAATG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 479
BseSI GKGCMC 1 cut(s) 66
BseXI GCAGC 3 cut(s) 86, 142, 210
BshFI GGCC 1 cut(s) 385
BslI CCNNNNNNNGG 3 cut(s) 59, 288, 576
BsmAI GTCTC 1 cut(s) 255
BsnI GGCC 1 cut(s) 385
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 32
Bsp19I CCATGG 1 cut(s) 647
BspACI CCGC 1 cut(s) 315
BspANI GGCC 1 cut(s) 385
BspPI GGATC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 386, 647
BssMI GATC 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 647
Bst6I CTCTTC 2 cut(s) 428, 456
BstACI GRCGYC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 514
BstDSI CCRYGG 1 cut(s) 647
BstENI CCTNNNNNAGG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 82, 187
BstKTI GATC 1 cut(s) 35
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstSFI CTRYAG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 66
BstV1I GCAGC 3 cut(s) 86, 142, 210
BstV2I GAAGAC 2 cut(s) 566, 587
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 1 cut(s) 385
BtgI CCRYGG 1 cut(s) 647
BtsCI GGATG 2 cut(s) 82, 187
Cac8I GCNNGC 1 cut(s) 514
CseI GACGC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 644
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviAII CATG 3 cut(s) 333, 634, 648
CviJI RGCY 9 cut(s) 14, 99, 137, 223, 254, 292, 385, 416, 490
CviKI_1 RGCY 9 cut(s) 14, 99, 137, 223, 254, 292, 385, 416, 490
CviQI GTAC 1 cut(s) 644
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 383
Eam1104I CTCTTC 2 cut(s) 428, 456
EarI CTCTTC 2 cut(s) 428, 456
EciI GGCGGA 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 647
EcoNI CCTNNNNNAGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 647
EcoT22I ATGCAT 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 647
FaeI CATG 3 cut(s) 336, 637, 651
FaiI YATR 7 cut(s) 218, 334, 339, 398, 614, 635, 649
FatI CATG 3 cut(s) 332, 633, 647
FblI GTMKAC 2 cut(s) 303, 450
Fnu4HI GCNGC 3 cut(s) 100, 156, 224
FokI GGATG 2 cut(s) 89, 194
Fsp4HI GCNGC 3 cut(s) 100, 156, 224
GluI GCNGC 3 cut(s) 100, 156, 224
HaeIII GGCC 1 cut(s) 385
HgaI GACGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 3 cut(s) 336, 637, 651
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 3 cut(s) 47, 311, 391
HphI GGTGA 2 cut(s) 42, 664
Hpy166II GTNNAC 3 cut(s) 304, 451, 644
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 2 cut(s) 87, 484
Hpy8I GTNNAC 3 cut(s) 304, 451, 644
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 3 cut(s) 127, 187, 406
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 5 cut(s) 158, 246, 430, 516, 637
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpySE526I ACGT 1 cut(s) 453
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 3 cut(s) 336, 637, 651
Kzo9I GATC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 4 cut(s) 8, 72, 402, 420
Lsp1109I GCAGC 3 cut(s) 86, 142, 210
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 1 cut(s) 48
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MboII GAAGA 4 cut(s) 445, 473, 571, 592
MflI RGATCY 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 6 cut(s) 17, 106, 248, 328, 544, 655
MlyI GAGTC 2 cut(s) 56, 305
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 7 cut(s) 53, 63, 230, 282, 381, 429, 457
Mph1103I ATGCAT 1 cut(s) 639
MseI TTAA 2 cut(s) 599, 620
MwoI GCNNNNNNNGC 1 cut(s) 314
NcoI CCATGG 1 cut(s) 647
NdeII GATC 1 cut(s) 32
NlaIII CATG 3 cut(s) 336, 637, 651
NmeAIII GCCGAG 1 cut(s) 411
NmuCI GTSAC 1 cut(s) 48
NsiI ATGCAT 1 cut(s) 639
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 3 cut(s) 101, 157, 225
PleI GAGTC 2 cut(s) 55, 305
PpsI GAGTC 2 cut(s) 55, 305
PsiI TTATAA 1 cut(s) 398
PsuI RGATCY 1 cut(s) 32
RsaI GTAC 1 cut(s) 645
RsaNI GTAC 1 cut(s) 644
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 599, 620
SatI GCNGC 3 cut(s) 100, 156, 224
Sau3AI GATC 1 cut(s) 32
SchI GAGTC 2 cut(s) 56, 305
SduI GDGCHC 1 cut(s) 66
SetI ASST 9 cut(s) 8, 16, 55, 97, 101, 225, 409, 456, 492
SfcI CTRYAG 1 cut(s) 507
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 6 cut(s) 17, 106, 248, 328, 544, 655
SsiI CCGC 1 cut(s) 315
SspI AATATT 1 cut(s) 274
StyI CCWWGG 1 cut(s) 647
TaiI ACGT 1 cut(s) 456
TaqI TCGA 2 cut(s) 303, 574
TasI AATT 6 cut(s) 17, 106, 248, 328, 544, 655
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 2 cut(s) 599, 620
Tru9I TTAA 2 cut(s) 599, 620
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 3 cut(s) 99, 155, 223
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 3 cut(s) 321, 474, 622
XagI CCTNNNNNAGG 1 cut(s) 57
XmiI GTMKAC 2 cut(s) 303, 450
Zsp2I ATGCAT 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.