Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000695

Physical Location & Seq

Genomic Coordinates Reverse (-)

35503366 .. 35505551

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029255

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGGTTGGAAGCAAAATTAGATGGGAGAGCCCTTCCCATTGAGTCGCCTCCAGCAGGCCATGTTACCAAGGACCTTGGTTGTGGACAAGGTAGCTGCTCCAATTTGCGGGAGAAGTGTGCTCTTCAAAAGTCTGAAGACCTTGTTGTCAATGCAAAGAAGCATTTGGAGTTAGAGGATGACGTTCAGGAGAAAATACAAGAAGAAAATGTTGTAAAGATGCTGGTGGAAGAACCAGTGCCTATAGAGGTTGAAGAAAAGGCTATTCAGTTGGTGGAAGTCACACAACAGAAACAACGGCCTACATCTATTAAGGGTCTGAAGAAGAAGAAAAGGCCAGTAGACGAGGATGAAGAGGAGGATCTCGACTTGAAGAAACTGCCAAAAGATTACCCTGCACCGTTGAAATGCTTGTGGTTGTGGGCTAGAGACAATTTGGCAAATGGGAGGACAATGTCCTTTCAAATGGAAGATAAAGTTTTGGGCATTAACATGAAGCAATATTTGTTTAAGGGAGACATTTATGCATTGTGTACCATGTCTGAACTGTCGGGTGGAGTGATTTCCATGTATATTCTTGGCAGCGGCGATCGGAATTGGTTTACACCCAAAAGGATCTATTTGTTTCAGTGGCAGCAGCGAACAGAATTAGTTTACACCCAAAAGGATCTTGATGATGTGAGGTCAGAGTGGGCAAAGTTTGTCTTGAAGTATCATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

27.66

Weight (kDa)

5.81

Isoelectric Point (pI)

55.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405551
rosa_laevigata	RLG00000000512 RLG00000006283 RLG00000008110 RLG00000008280 RLG00000013435 RLG00000014038 RLG00000019487 RLG00000019783 RLG00000020425 RLG00000022555 RLG00000022693 RLG00000023047 RLG00000027683 RLG00000028941 RLG00000029255 RLG00000033981 RLG00000034375 RLG00000035055 RLG00000036983
rosa_multiflora	Rmu_sc0002070.1_g000038 Rmu_sc0002521.1_g000050 Rmu_sc0002986.1_g000060 Rmu_sc0003002.1_g000067 Rmu_sc0006244.1_g000030 Rmu_sc0009710.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002410 Rroxscaffold_1G00026380 Rroxscaffold_1G00026390 Rroxscaffold_1G00063340 Rroxscaffold_2G00089150 Rroxscaffold_2G00114500 Rroxscaffold_2G00155770 Rroxscaffold_3G00224480 Rroxscaffold_3G00243690 Rroxscaffold_3G00251260 Rroxscaffold_4G00298200 Rroxscaffold_4G00327440 Rroxscaffold_7G00192530
rosa_rugosa	Rorug01G0052300 Rorug01G0094500 Rorug03G0152700 Rorug03G0245200 Rorug03G0338800 Rorug03G0338900 Rorug04G0045100 Rorug04G0168400 Rorug04G0291600 Rorug07G0163300 Rorug07G0349700
rosa_samantha	Rh1AG146400 Rh1BG098400 Rh2CG327400 Rh3BG286300 Rh3BG323300 Rh4AG085300 Rh4AG137800 Rh4CG008600 Rh4CG032900 Rh4CG092500 Rh4CG180400 Rh4CG231200 Rh4CG274400 Rh4CG304800 Rh5AG384900 Rh5BG344700 Rh5CG355300 Rh6AG151000 Rh6BG302500 Rh6DG135900 Rh6DG138700 Rh6DG206300 Rh6DG319500 Rh7BG412300 Rh7CG476300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	2 cut(s)	109, 585
AclWI	GGATC	3 cut(s)	369, 623, 675
AcuI	CTGAAG	2 cut(s)	156, 341
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	2 cut(s)	56, 108
AgsI	TTSAA	6 cut(s)	128, 254, 373, 406, 464, 709
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	2 cut(s)	423, 510
AlwI	GGATC	3 cut(s)	369, 623, 675
AoxI	GGCC	3 cut(s)	58, 299, 335
ApeKI	GCWGC	4 cut(s)	96, 582, 634, 637
AspS9I	GGNCC	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	4 cut(s)	83, 594, 646, 649
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	423, 510
BfaI	CTAG	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	5 cut(s)	97, 583, 586, 635, 638
BlsI	GCNGC	5 cut(s)	98, 584, 587, 636, 639
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	69, 76
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 108
Bse1I	ACTGG	2 cut(s)	236, 338
BseDI	CCNNGG	2 cut(s)	69, 76
BseGI	GGATG	2 cut(s)	184, 355
BseLI	CCNNNNNNNGG	2 cut(s)	56, 108
BseNI	ACTGG	2 cut(s)	236, 338
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	4 cut(s)	83, 594, 646, 649
BsgI	GTGCAG	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	592
BshFI	GGCC	3 cut(s)	60, 301, 337
BsiEI	CGRYCG	1 cut(s)	592
BsiHKAI	GWGCWC	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	56, 108
BsmAI	GTCTC	2 cut(s)	423, 510
BsnI	GGCC	3 cut(s)	60, 301, 337
Bsp1286I	GDGCHC	2 cut(s)	34, 124
Bsp143I	GATC	4 cut(s)	361, 589, 615, 667
BspACI	CCGC	2 cut(s)	109, 585
BspANI	GGCC	3 cut(s)	60, 301, 337
BspPI	GGATC	3 cut(s)	369, 623, 675
BspQI	GCTCTTC	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	236, 338
BssECI	CCNNGG	2 cut(s)	69, 76
BssMI	GATC	4 cut(s)	361, 589, 615, 667
BssT1I	CCWWGG	2 cut(s)	69, 76
Bst4CI	ACNGT	2 cut(s)	402, 549
Bst6I	CTCTTC	2 cut(s)	129, 348
BstC8I	GCNNGC	1 cut(s)	58
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	184, 355
BstKTI	GATC	4 cut(s)	364, 592, 618, 670
BstMAI	GTCTC	2 cut(s)	423, 510
BstMBI	GATC	4 cut(s)	361, 589, 615, 667
BstMCI	CGRYCG	1 cut(s)	592
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	4 cut(s)	83, 594, 646, 649
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	3 cut(s)	361, 615, 667
BstYI	RGATCY	3 cut(s)	361, 615, 667
BsuRI	GGCC	3 cut(s)	60, 301, 337
BtsCI	GGATG	2 cut(s)	184, 355
BtsIMutI	CAGTG	2 cut(s)	243, 635
Cac8I	GCNNGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	534
CviAII	CATG	5 cut(s)	62, 493, 538, 568, 716
CviJI	RGCY	7 cut(s)	32, 60, 96, 263, 301, 337, 425
CviKI_1	RGCY	7 cut(s)	32, 60, 96, 263, 301, 337, 425
CviQI	GTAC	1 cut(s)	534
DpnI	GATC	4 cut(s)	363, 591, 617, 669
DpnII	GATC	4 cut(s)	361, 589, 615, 667
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eam1104I	CTCTTC	2 cut(s)	129, 348
EarI	CTCTTC	2 cut(s)	129, 348
Eco130I	CCWWGG	2 cut(s)	69, 76
Eco24I	GRGCYC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	73
Eco57I	CTGAAG	2 cut(s)	156, 341
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	73
EcoT14I	CCWWGG	2 cut(s)	69, 76
EcoT22I	ATGCAT	2 cut(s)	529, 721
EcoT38I	GRGCYC	1 cut(s)	34
ErhI	CCWWGG	2 cut(s)	69, 76
FaeI	CATG	5 cut(s)	65, 496, 541, 571, 719
FaiI	YATR	9 cut(s)	63, 245, 494, 525, 539, 569, 573, 717, 721
FalI	AAGNNNNNCTT	2 cut(s)	689, 721
FatI	CATG	5 cut(s)	61, 492, 537, 567, 715
FauI	CCCGC	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	5 cut(s)	97, 583, 586, 635, 638
FokI	GGATG	2 cut(s)	191, 362
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	5 cut(s)	97, 583, 586, 635, 638
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	5 cut(s)	97, 583, 586, 635, 638
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	60, 301, 337
Hin1II	CATG	5 cut(s)	65, 496, 541, 571, 719
HinfI	GANTC	1 cut(s)	44
Hpy166II	GTNNAC	5 cut(s)	86, 343, 534, 603, 655
Hpy188I	TCNGA	5 cut(s)	136, 321, 544, 594, 688
Hpy188III	TCNNGA	4 cut(s)	188, 365, 671, 706
Hpy8I	GTNNAC	5 cut(s)	86, 343, 534, 603, 655
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	402, 549
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	4 cut(s)	155, 398, 527, 719
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	5 cut(s)	65, 496, 541, 571, 719
Kzo9I	GATC	4 cut(s)	361, 589, 615, 667
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	7 cut(s)	42, 66, 173, 209, 249, 351, 408
Lsp1109I	GCAGC	4 cut(s)	83, 594, 646, 649
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	64, 280
MalI	GATC	4 cut(s)	363, 591, 617, 669
MboI	GATC	4 cut(s)	361, 589, 615, 667
MflI	RGATCY	3 cut(s)	361, 615, 667
MhlI	GDGCHC	2 cut(s)	34, 124
MluCI	AATT	5 cut(s)	17, 103, 433, 595, 647
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	8 cut(s)	60, 169, 241, 340, 349, 352, 441, 675
Mph1103I	ATGCAT	2 cut(s)	529, 721
MseI	TTAA	3 cut(s)	312, 489, 510
MslI	CAYNNNNRTG	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	585
NdeII	GATC	4 cut(s)	361, 589, 615, 667
NlaIII	CATG	5 cut(s)	65, 496, 541, 571, 719
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	2 cut(s)	529, 721
PciSI	GCTCTTC	1 cut(s)	129
PflFI	GACNNNGTC	1 cut(s)	454
PkrI	GCNGC	5 cut(s)	98, 584, 587, 636, 639
Ple19I	CGATCG	1 cut(s)	592
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PpuMI	RGGWCCY	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	73
PspPPI	RGGWCCY	1 cut(s)	73
PsuI	RGATCY	3 cut(s)	361, 615, 667
PsyI	GACNNNGTC	1 cut(s)	454
PvuI	CGATCG	1 cut(s)	592
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
RseI	CAYNNNNRTG	1 cut(s)	491
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	312, 489, 510
SatI	GCNGC	5 cut(s)	97, 583, 586, 635, 638
Sau3AI	GATC	4 cut(s)	361, 589, 615, 667
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	34, 124
SetI	ASST	8 cut(s)	8, 78, 94, 98, 144, 186, 252, 686
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	5 cut(s)	17, 103, 433, 595, 647
SsiI	CCGC	2 cut(s)	109, 585
SspI	AATATT	1 cut(s)	503
SspMI	CTAG	1 cut(s)	426
StyI	CCWWGG	2 cut(s)	69, 76
TaaI	ACNGT	2 cut(s)	402, 549
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	366
TasI	AATT	5 cut(s)	17, 103, 433, 595, 647
TauI	GCSGC	1 cut(s)	588
Tru1I	TTAA	3 cut(s)	312, 489, 510
Tru9I	TTAA	3 cut(s)	312, 489, 510
TscAI	CASTG	2 cut(s)	243, 635
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	4 cut(s)	96, 582, 634, 637
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	366, 509
TspRI	CASTG	2 cut(s)	243, 635
Tth111I	GACNNNGTC	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	73
XagI	CCTNNNNNAGG	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	1 cut(s)	426
Zsp2I	ATGCAT	2 cut(s)	529, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.