Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000695

Physical Location & Seq

Genomic Coordinates Reverse (-)

36142719 .. 36143812

Gene Structure 1094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAGATTGGAAGCAAAATTAGATGGGAGAGCCCTTCCCATTGAAGTCGCCTCCGGCAGCCATGTTACCAAGGATCTTGGTTCTGGACAAGGTAGCTGCTCCAATTTGTGGGAGAAGTGTCCTCTTCAAAAGAAACAACGGCCTAAGTCTGTTAAGGGTCCGAAGAAGAGGAAAAGGCCAGTAGAGGAGGATGAAGAGGAGGATCTCGACTTGAAGAAACTGCCAAAAGATTACCCCGCACCGTTGAAATGCTTGTGGTTGTGGGCTAGAGACAATTTGGCAAATGGGAGGACAATGTCCTTTCGGATGGAAGATAAAGTTTTTGGCATCAACAGGAAGCATTATTTGTTTAAGGGAGACATTTATGCATTGTGTACCATGTCCGAACTATACGGTGGAGTGATCTCCATGTATATTCGTAAGTTGATAAAAAAAATAATTAGCCATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 Transposase_24

Protein Analysis

150

Amino Acids

17.19

Weight (kDa)

9.57

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405551
rosa_laevigata	RLG00000000512 RLG00000006283 RLG00000008110 RLG00000008280 RLG00000013435 RLG00000014038 RLG00000019487 RLG00000019783 RLG00000020425 RLG00000022555 RLG00000022693 RLG00000023047 RLG00000027683 RLG00000028941 RLG00000029255 RLG00000033981 RLG00000034375 RLG00000035055 RLG00000036983
rosa_multiflora	Rmu_sc0002070.1_g000038 Rmu_sc0002521.1_g000050 Rmu_sc0002986.1_g000060 Rmu_sc0003002.1_g000067 Rmu_sc0006244.1_g000030 Rmu_sc0009710.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002410 Rroxscaffold_1G00026380 Rroxscaffold_1G00026390 Rroxscaffold_1G00063340 Rroxscaffold_2G00089150 Rroxscaffold_2G00114500 Rroxscaffold_2G00155770 Rroxscaffold_3G00224480 Rroxscaffold_3G00243690 Rroxscaffold_3G00251260 Rroxscaffold_4G00298200 Rroxscaffold_4G00327440 Rroxscaffold_7G00192530
rosa_rugosa	Rorug01G0052300 Rorug01G0094500 Rorug03G0152700 Rorug03G0245200 Rorug03G0338800 Rorug03G0338900 Rorug04G0045100 Rorug04G0168400 Rorug04G0291600 Rorug07G0163300 Rorug07G0349700
rosa_samantha	Rh1AG146400 Rh1BG098400 Rh2CG327400 Rh3BG286300 Rh3BG323300 Rh4AG085300 Rh4AG137800 Rh4CG008600 Rh4CG032900 Rh4CG092500 Rh4CG180400 Rh4CG231200 Rh4CG274400 Rh4CG304800 Rh5AG384900 Rh5BG344700 Rh5CG355300 Rh6AG151000 Rh6BG302500 Rh6DG135900 Rh6DG138700 Rh6DG206300 Rh6DG319500 Rh7BG412300 Rh7CG476300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	108
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	2 cut(s)	81, 210
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	44, 128, 214, 247
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	264, 351
AlwI	GGATC	2 cut(s)	81, 210
AoxI	GGCC	2 cut(s)	140, 176
ApeKI	GCWGC	2 cut(s)	57, 96
AspS9I	GGNCC	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	69, 83
BccI	CCATC	2 cut(s)	17, 301
BceAI	ACGGC	1 cut(s)	155
BcoDI	GTCTC	2 cut(s)	264, 351
BfaI	CTAG	1 cut(s)	267
BisI	GCNGC	2 cut(s)	58, 97
BlsI	GCNGC	2 cut(s)	59, 98
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	159
BmsI	GCATC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	196, 312
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	2 cut(s)	200, 212
BseXI	GCAGC	2 cut(s)	69, 83
BshFI	GGCC	2 cut(s)	142, 178
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	264, 351
BsnI	GGCC	2 cut(s)	142, 178
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	3 cut(s)	73, 202, 402
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	142, 178
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	2 cut(s)	81, 210
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	3 cut(s)	73, 202, 402
BssT1I	CCWWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	243, 395
Bst6I	CTCTTC	3 cut(s)	129, 161, 189
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	196, 312
BstKTI	GATC	3 cut(s)	76, 205, 405
BstMAI	GTCTC	2 cut(s)	264, 351
BstMBI	GATC	3 cut(s)	73, 202, 402
BstV1I	GCAGC	2 cut(s)	69, 83
BstX2I	RGATCY	2 cut(s)	73, 202
BstYI	RGATCY	2 cut(s)	73, 202
BsuRI	GGCC	2 cut(s)	142, 178
BtsCI	GGATG	2 cut(s)	196, 312
Cfr13I	GGNCC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	3 cut(s)	62, 379, 409
CviJI	RGCY	7 cut(s)	32, 60, 96, 142, 178, 266, 444
CviKI_1	RGCY	7 cut(s)	32, 60, 96, 142, 178, 266, 444
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	3 cut(s)	75, 204, 404
DpnII	GATC	3 cut(s)	73, 202, 402
Eam1104I	CTCTTC	3 cut(s)	129, 161, 189
EarI	CTCTTC	3 cut(s)	129, 161, 189
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	3 cut(s)	65, 382, 412
FaiI	YATR	7 cut(s)	63, 366, 380, 391, 410, 414, 451
FatI	CATG	3 cut(s)	61, 378, 408
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	58, 97
FokI	GGATG	2 cut(s)	203, 319
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	2 cut(s)	58, 97
FspBI	CTAG	1 cut(s)	267
GluI	GCNGC	2 cut(s)	58, 97
HaeIII	GGCC	2 cut(s)	142, 178
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	3 cut(s)	65, 382, 412
HpaII	CCGG	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	3 cut(s)	162, 306, 385
Hpy188III	TCNNGA	2 cut(s)	84, 206
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	243, 395
HpyCH4V	TGCA	1 cut(s)	368
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	3 cut(s)	65, 382, 412
Kzo9I	GATC	3 cut(s)	73, 202, 402
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	4 cut(s)	67, 69, 192, 319
Lsp1109I	GCAGC	2 cut(s)	69, 83
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	3 cut(s)	75, 204, 404
MboI	GATC	3 cut(s)	73, 202, 402
MboII	GAAGA	6 cut(s)	116, 175, 178, 206, 226, 323
MflI	RGATCY	2 cut(s)	73, 202
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	4 cut(s)	17, 103, 274, 438
MnlI	CCTC	8 cut(s)	61, 132, 162, 178, 181, 190, 193, 282
Mph1103I	ATGCAT	1 cut(s)	370
MseI	TTAA	2 cut(s)	153, 351
MspI	CCGG	1 cut(s)	54
NdeII	GATC	3 cut(s)	73, 202, 402
NlaIII	CATG	3 cut(s)	65, 382, 412
NlaIV	GGNNCC	1 cut(s)	159
NsiI	ATGCAT	1 cut(s)	370
PflFI	GACNNNGTC	1 cut(s)	295
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	59, 98
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	158
PsuI	RGATCY	2 cut(s)	73, 202
PsyI	GACNNNGTC	1 cut(s)	295
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	153, 351
SatI	GCNGC	2 cut(s)	58, 97
Sau3AI	GATC	3 cut(s)	73, 202, 402
Sau96I	GGNCC	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	2 cut(s)	94, 98
SfaNI	GCATC	1 cut(s)	336
SinI	GGWCC	1 cut(s)	158
Sse9I	AATT	4 cut(s)	17, 103, 274, 438
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	243, 395
TaqI	TCGA	1 cut(s)	207
TasI	AATT	4 cut(s)	17, 103, 274, 438
Tru1I	TTAA	2 cut(s)	153, 351
Tru9I	TTAA	2 cut(s)	153, 351
TseI	GCWGC	2 cut(s)	57, 96
TspDTI	ATGAA	2 cut(s)	207, 438
Tth111I	GACNNNGTC	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	158
XspI	CTAG	1 cut(s)	267
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.