Rh4CG231200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000695
Physical Location & Seq
Reverse (-)
47003459 .. 47012690
9232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG231200.1

Sequence Viewer

Length: 624 bp
ATGGAGGTTATGGCTCCTTCAAAGACATTGGCTACCTCAAGAGCAAAAGAAAATATTCTTAAGGCATTGAGAGCTACAAGAGCGAGCGCAAAGAAGCGTTTGGAGTTAGAGGTTGAAGTTCAGGAGAAAGTACAAGAAGAAAATATTGTGAAGCTGCCGGTGGAAGAACCAGTGGCTATAGAGGTTGAAGAAAAGGCTATTCAGTTGGTGGAAGTCACACAACAGAAACAACGGCCTAAGTCTGTTAAGGGTCTGAAGAAAAGGAAAAGGCCAGTAGAGGAGGATGAAGATGAGGATCTCGACTTGAAGAAACTGCCAAAAGATTACCCTGCACCGTTGAAATGCTTGTGGTTGTGGGCTAGAGACAATTTGGCAAATGGGAGGACAATGTCCTTTCAGATGGAAGATAAAGTTTTTGGCATCAACAGGAAGCATTATTTGTTTAAGGGAGACATTTATGCATTGTGTACCATGTCTGAACTATCTGGTGGAGTGATCTCCATTGGAATCAAAATTTACAATGCTCAGATGGATAGATGTGGCCGGAAATCTATAGTGTGGCATAACATGGGGTTGTCCAACTTTAAGAAACACAACTACAAAGTTACATATTCTGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.79

Weight (kDa)

9.35

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 303
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 1 cut(s) 513
AcuI CTGAAG 1 cut(s) 275
AfaI GTAC 2 cut(s) 132, 469
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 5 cut(s) 21, 116, 188, 307, 340
AluBI AGCT 2 cut(s) 74, 154
AluI AGCT 2 cut(s) 74, 154
Alw26I GTCTC 2 cut(s) 357, 444
AlwI GGATC 1 cut(s) 303
AoxI GGCC 3 cut(s) 233, 269, 541
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 513
Asp700I GAANNNNTTC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 141
BccI CCATC 2 cut(s) 394, 523
BceAI ACGGC 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 357, 444
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 2 cut(s) 177, 552
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 15
BmsI GCATC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 294
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 170, 272
Bse8I GATNNNNATC 1 cut(s) 294
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 294
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 2 cut(s) 170, 272
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 315
BshFI GGCC 3 cut(s) 235, 271, 543
BsiSI CCGG 2 cut(s) 158, 544
BsmAI GTCTC 2 cut(s) 357, 444
BsnI GGCC 3 cut(s) 235, 271, 543
Bsp143I GATC 2 cut(s) 295, 495
BspANI GGCC 3 cut(s) 235, 271, 543
BspCNI CTCAG 1 cut(s) 538
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 303
BspTI CTTAAG 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 2 cut(s) 170, 272
BssAI RCCGGY 1 cut(s) 157
BssMI GATC 2 cut(s) 295, 495
Bst4CI ACNGT 1 cut(s) 336
BstAFI CTTAAG 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 237, 525
BstF5I GGATG 1 cut(s) 289
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 2 cut(s) 298, 498
BstMAI GTCTC 2 cut(s) 357, 444
BstMBI GATC 2 cut(s) 295, 495
BstMWI GCNNNNNNNGC 2 cut(s) 71, 80
BstSFI CTRYAG 2 cut(s) 177, 552
BstV1I GCAGC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 3 cut(s) 235, 271, 543
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 157
Csp6I GTAC 2 cut(s) 131, 468
CviAII CATG 2 cut(s) 472, 568
CviQI GTAC 2 cut(s) 131, 468
DdeI CTNAG 2 cut(s) 237, 525
DpnI GATC 2 cut(s) 297, 497
DpnII GATC 2 cut(s) 295, 495
EaeI YGGCCR 1 cut(s) 541
Eco57I CTGAAG 1 cut(s) 275
EcoT22I ATGCAT 1 cut(s) 463
FaeI CATG 2 cut(s) 475, 571
FaiI YATR 8 cut(s) 11, 179, 459, 473, 554, 564, 569, 610
FatI CATG 2 cut(s) 471, 567
Fnu4HI GCNGC 1 cut(s) 155
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 1 cut(s) 360
GlaI GCGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 155
HaeIII GGCC 3 cut(s) 235, 271, 543
HapII CCGG 2 cut(s) 158, 544
HhaI GCGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 475, 571
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 1 cut(s) 507
HpaII CCGG 2 cut(s) 158, 544
Hpy166II GTNNAC 1 cut(s) 468
Hpy188I TCNGA 5 cut(s) 255, 399, 478, 528, 623
Hpy188III TCNNGA 3 cut(s) 39, 122, 299
Hpy8I GTNNAC 1 cut(s) 468
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 1 cut(s) 336
HpyCH4V TGCA 2 cut(s) 332, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 80
HpyF3I CTNAG 2 cut(s) 237, 525
Hsp92II CATG 2 cut(s) 475, 571
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 2 cut(s) 295, 495
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 8 cut(s) 107, 171, 183, 285, 342, 412, 471, 557
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 429
MaeI CTAG 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 214, 604
MalI GATC 2 cut(s) 297, 497
MboI GATC 2 cut(s) 295, 495
MboII GAAGA 7 cut(s) 149, 176, 200, 268, 299, 319, 416
MflI RGATCY 1 cut(s) 295
MluCI AATT 2 cut(s) 367, 513
MmeI TCCRAC 1 cut(s) 603
MnlI CCTC 7 cut(s) 46, 103, 175, 271, 274, 286, 375
Mph1103I ATGCAT 1 cut(s) 463
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 4 cut(s) 60, 246, 444, 585
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 2 cut(s) 158, 544
MwoI GCNNNNNNNGC 2 cut(s) 71, 80
NdeII GATC 2 cut(s) 295, 495
NlaIII CATG 2 cut(s) 475, 571
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 214
NsiI ATGCAT 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 507
PflFI GACNNNGTC 1 cut(s) 388
PkrI GCNGC 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 15
PsuI RGATCY 1 cut(s) 295
PsyI GACNNNGTC 1 cut(s) 388
RsaI GTAC 2 cut(s) 132, 469
RsaNI GTAC 2 cut(s) 131, 468
SaqAI TTAA 4 cut(s) 60, 246, 444, 585
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 2 cut(s) 295, 495
SetI ASST 6 cut(s) 9, 38, 76, 114, 156, 186
SfaNI GCATC 1 cut(s) 429
SfcI CTRYAG 2 cut(s) 177, 552
SmlI CTYRAG 2 cut(s) 37, 59
SmoI CTYRAG 2 cut(s) 37, 59
Sse9I AATT 2 cut(s) 367, 513
SspI AATATT 2 cut(s) 55, 145
SspMI CTAG 1 cut(s) 360
TaaI ACNGT 1 cut(s) 336
TaqI TCGA 1 cut(s) 300
TasI AATT 2 cut(s) 367, 513
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 1 cut(s) 507
Tru1I TTAA 4 cut(s) 60, 246, 444, 585
Tru9I TTAA 4 cut(s) 60, 246, 444, 585
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 300
TspRI CASTG 1 cut(s) 177
Tth111I GACNNNGTC 1 cut(s) 388
Vha464I CTTAAG 1 cut(s) 59
XapI RAATTY 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.