Rh6DG135900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000695
Physical Location & Seq
Forward (+)
19419285 .. 19423986
4702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG135900.1

Sequence Viewer

Length: 507 bp
ATGAGGTTGGAAGCAAAACTTGAAGGGAAAACCCTTGCCATTGAGTCCCTTACGGCAGGCCAGAAGGACCTTGGTTTTGGACAAGGTAGTTGCTCCACTTTGCGTGAGAAGTATGCATTACAAAAGATTGAGGACGTTGCTGGTATCTCTGCAAAGAAGCGGTTAGACTTAGTGGATGACATTGCGAAGGAAGTGGAAGAAGATAAGGTTGTACAGGTTCCGATGGAAGAACCAGCTGCTGCAGTAGTTCATGAGAAGGCTGTTGAGTTGGTTGAAGTTACACAGCAGAAACAACCAAATAAGTCCAGTAAGGGTTTGAAGAAGAGGAAAAGGCAAGTAGGCATTCCTGAAGAGGAGAATATTGACATGAAGAAGCTACCAAAAGATTACCCTACACCTTTGAATGGGATCAAAATTTATAATGCTCAAAGAAATAGGTCTGGCCGGAAATCAATAGTGTGGCAAAACATGGGGAGAATCTGTCCCAATCAGTGTGGGAGATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.83

Weight (kDa)

9.28

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AciI CCGC 1 cut(s) 160
AclWI GGATC 1 cut(s) 416
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 1 cut(s) 414
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 404
AgsI TTSAA 4 cut(s) 23, 275, 319, 403
AluBI AGCT 2 cut(s) 236, 376
AluI AGCT 2 cut(s) 236, 376
AlwI GGATC 1 cut(s) 416
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 2 cut(s) 58, 442
ApeKI GCWGC 2 cut(s) 236, 239
ApoI RAATTY 1 cut(s) 414
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspS9I GGNCC 1 cut(s) 67
AvaII GGWCC 1 cut(s) 67
BbvI GCAGC 2 cut(s) 223, 226
BccI CCATC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 2 cut(s) 237, 240
BlsI GCNGC 2 cut(s) 238, 241
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 466, 496
Bsc4I CCNNNNNNNGG 1 cut(s) 404
Bse1I ACTGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 404
BseMI GCAATG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 2 cut(s) 223, 226
BshFI GGCC 2 cut(s) 60, 444
BsiSI CCGG 1 cut(s) 445
BslFI GGGAC 2 cut(s) 31, 468
BslI CCNNNNNNNGG 1 cut(s) 404
BsmFI GGGAC 2 cut(s) 31, 468
BsmI GAATGC 1 cut(s) 342
BsnI GGCC 2 cut(s) 60, 444
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 1 cut(s) 408
BspACI CCGC 1 cut(s) 160
BspANI GGCC 2 cut(s) 60, 444
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 219
BspMAI CTGCAG 1 cut(s) 244
BspPI GGATC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 180
BsrGI TGTACA 1 cut(s) 211
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 70
Bst6I CTCTTC 2 cut(s) 317, 345
BstAUI TGTACA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 1 cut(s) 411
BstMBI GATC 1 cut(s) 408
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 223, 226
BsuRI GGCC 2 cut(s) 60, 444
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 58
CaiI CAGNNNCTG 1 cut(s) 239
CciI TCATGA 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 212
CspCI CAANNNNNGTGG 1 cut(s) 475
CviAII CATG 3 cut(s) 251, 367, 469
CviJI RGCY 5 cut(s) 60, 236, 260, 376, 444
CviKI_1 RGCY 5 cut(s) 60, 236, 260, 376, 444
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 1 cut(s) 169
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
EaeI YGGCCR 1 cut(s) 442
Eam1104I CTCTTC 2 cut(s) 317, 345
EarI CTCTTC 2 cut(s) 317, 345
Eco130I CCWWGG 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 3 cut(s) 254, 370, 472
FaiI YATR 5 cut(s) 114, 252, 368, 420, 470
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 2 cut(s) 31, 468
FatI CATG 3 cut(s) 250, 366, 468
Fnu4HI GCNGC 2 cut(s) 237, 240
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 237, 240
GluI GCNGC 2 cut(s) 237, 240
HaeIII GGCC 2 cut(s) 60, 444
HapII CCGG 1 cut(s) 445
Hin1II CATG 3 cut(s) 254, 370, 472
HinfI GANTC 2 cut(s) 44, 477
HpaII CCGG 1 cut(s) 445
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 251, 347
HpyAV CCTTC 4 cut(s) 17, 58, 181, 250
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 3 cut(s) 116, 152, 242
HpyF3I CTNAG 1 cut(s) 169
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 3 cut(s) 254, 370, 472
Kzo9I GATC 1 cut(s) 408
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 9 cut(s) 42, 74, 126, 200, 246, 319, 360, 426, 458
Lsp1109I GCAGC 2 cut(s) 223, 226
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 277
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 7 cut(s) 209, 212, 239, 331, 334, 362, 382
MluCI AATT 1 cut(s) 414
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 3 cut(s) 124, 318, 346
Mph1103I ATGCAT 1 cut(s) 118
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 445
Mva1269I GAATGC 1 cut(s) 342
NdeII GATC 1 cut(s) 408
NlaIII CATG 3 cut(s) 254, 370, 472
NlaIV GGNNCC 1 cut(s) 219
NsiI ATGCAT 1 cut(s) 118
PagI TCATGA 1 cut(s) 250
PctI GAATGC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 477
PkrI GCNGC 2 cut(s) 238, 241
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 67
PsiI TTATAA 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 67
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SatI GCNGC 2 cut(s) 237, 240
Sau3AI GATC 1 cut(s) 408
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 1 cut(s) 67
Sse9I AATT 1 cut(s) 414
SsiI CCGC 1 cut(s) 160
SspI AATATT 1 cut(s) 361
StyI CCWWGG 1 cut(s) 70
TaiI ACGT 1 cut(s) 138
TasI AATT 1 cut(s) 414
TatI WGTACW 1 cut(s) 211
TfiI GAWTC 1 cut(s) 477
TscAI CASTG 1 cut(s) 497
TseI GCWGC 2 cut(s) 236, 239
TspDTI ATGAA 2 cut(s) 239, 383
TspRI CASTG 1 cut(s) 497
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 1 cut(s) 414
XcmI CCANNNNNNNNNTGG 1 cut(s) 68
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.