Rh5AG384900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
66432156 .. 66433428
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG384900.1

Sequence Viewer

Length: 390 bp
ATGCAAATTGAGGACGCTGCTGTTATCTCAGCAAAGAAGCGTTTACAGTTAGCGGATGACATTGCGGAGGAAGTGGAAGAAGATAAGGTTGTACATTTTCAGGTGGAAGAACCAGCTGCTACAATAGTTGATGAGAAGGCTGTGAGGTCGGTTGAAGTTACACAGCAGAAACAGCAAAATAAGTCCAGTAAGGGTTTAAAAAAGAGGAAAAGGCAAGTAGATAATCCTGAAGAGGAGTATATTGACATGAAGAAGCTATCAAAAGATTACCCTGCACCTTTGAAGTGCTTGTGGATTTGGGTGAGAGACAATATGGCAAATGGGAAGACAATCTCCTTCAAGTTGGAAGAGAAAGTGTTTGGCATCGAAAGGAAGCAATATCTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

15.03

Weight (kDa)

6.62

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 53, 65
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 93
AgsI TTSAA 3 cut(s) 155, 283, 340
AluBI AGCT 2 cut(s) 116, 256
AluI AGCT 2 cut(s) 116, 256
Alw26I GTCTC 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 17, 116
AsuHPI GGTGA 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 332
BbvI GCAGC 2 cut(s) 4, 103
BcoDI GTCTC 1 cut(s) 300
BisI GCNGC 2 cut(s) 18, 117
BlsI GCNGC 2 cut(s) 19, 118
BmsI GCATC 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 60
BseGI GGATG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 2 cut(s) 4, 103
BsgI GTGCAG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 300
Bsp1407I TGTACA 1 cut(s) 91
BspACI CCGC 2 cut(s) 53, 65
BspCNI CTCAG 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 60
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 2 cut(s) 225, 342
BstAUI TGTACA 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 300
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstV1I GCAGC 2 cut(s) 4, 103
BstV2I GAAGAC 1 cut(s) 332
BtsCI GGATG 1 cut(s) 61
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 92
CviAII CATG 1 cut(s) 247
CviJI RGCY 3 cut(s) 116, 140, 256
CviKI_1 RGCY 3 cut(s) 116, 140, 256
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 1 cut(s) 28
DraI TTTAAA 1 cut(s) 198
Eam1104I CTCTTC 2 cut(s) 225, 342
EarI CTCTTC 2 cut(s) 225, 342
Eco57I CTGAAG 1 cut(s) 249
FaeI CATG 1 cut(s) 250
FaiI YATR 3 cut(s) 240, 248, 314
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 18, 117
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 2 cut(s) 18, 117
GluI GCNGC 2 cut(s) 18, 117
HgaI GACGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 250
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 2 cut(s) 130, 346
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 4, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 28
Hsp92II CATG 1 cut(s) 250
LpnPI CCDG 5 cut(s) 86, 126, 199, 240, 285
Lsp1109I GCAGC 2 cut(s) 4, 103
LweI GCATC 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 157
MboII GAAGA 7 cut(s) 89, 92, 119, 242, 262, 337, 359
MluCI AATT 1 cut(s) 6
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 5 cut(s) 4, 61, 138, 198, 226
MseI TTAA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 172
NlaIII CATG 1 cut(s) 250
PkrI GCNGC 2 cut(s) 19, 118
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 2 cut(s) 18, 117
SetI ASST 6 cut(s) 90, 105, 118, 149, 258, 280
SfaNI GCATC 1 cut(s) 372
SgeI CNNG 9 cut(s) 113, 125, 198, 227, 239, 259, 284, 301, 352
Sse9I AATT 1 cut(s) 6
SsiI CCGC 2 cut(s) 53, 65
TaaI ACNGT 1 cut(s) 48
TaqI TCGA 1 cut(s) 366
TasI AATT 1 cut(s) 6
TatI WGTACW 1 cut(s) 91
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TseI GCWGC 2 cut(s) 17, 116
TspDTI ATGAA 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.