Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000695

Physical Location & Seq

Genomic Coordinates Forward (+)

45225232 .. 45230441

Gene Structure 5210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00251260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCAAGTGAGTGATGGTGAGGTGACAACTTGTGGCACCGATGATGTATTGACAAAGGCTCTAGGTAACCCTAAGCACCATGGAAGAGTGCGTGGTGTGGGGGGTCATAAACAACAAAATAAGTCCAGTAAGGGTTTAAAAAAGAGGAAAAGGCAAGTAGATAATCCCGAAGAGGAGTATATTGACATGAAGAAGCTACCAAAAGATTACCCCGCACCTTTGAAGTGCTTGTGGATTTGGGCGAGAGACAATATGGCAAATGGGAAGACAATCTCCTTCAAGTTGGAAGAGAATGTGTTTGGCATCGAAAGGAAGCAATATCTCGAGGCTTGCAACGGGTCCGATGAGCGGGGCTGCGGCGTTGCGAGGCTGCCGGTGCGTTGCGGGGCTACGGATGCAAGGGCAGCAACGAGGCTAGGCTGCGGGGGTTGCGGGGATGCGAGCGCAACGCGTAGGAGGCGGGAAGCAGCGGCGCTGCAGAGGCCGGGATGCGGGCGGCGAGCTCGGAAAGCTAGAAGATTGGAGCGCAGCTTGCGGTGGTGGGATGTAGGGCTGGTGAACGGGGCTGCGGGGCAGCTGCGCGCGGTGGCGCGTGGGTCGGGCGAAAGGCGCGAGGCGCGGATGCTCGGTGGGGAGGCTATAGGGCGTGGTGTGCAACGGGGGAGGCTGCGAGGGGAAGGTAGGGCTGGACGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 Transposase_24

Protein Analysis

232

Amino Acids

25.46

Weight (kDa)

10.48

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405551
rosa_laevigata	RLG00000000512 RLG00000006283 RLG00000008110 RLG00000008280 RLG00000013435 RLG00000014038 RLG00000019487 RLG00000019783 RLG00000020425 RLG00000022555 RLG00000022693 RLG00000023047 RLG00000027683 RLG00000028941 RLG00000029255 RLG00000033981 RLG00000034375 RLG00000035055 RLG00000036983
rosa_multiflora	Rmu_sc0002070.1_g000038 Rmu_sc0002521.1_g000050 Rmu_sc0002986.1_g000060 Rmu_sc0003002.1_g000067 Rmu_sc0006244.1_g000030 Rmu_sc0009710.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002410 Rroxscaffold_1G00026380 Rroxscaffold_1G00026390 Rroxscaffold_1G00063340 Rroxscaffold_2G00089150 Rroxscaffold_2G00114500 Rroxscaffold_2G00155770 Rroxscaffold_3G00224480 Rroxscaffold_3G00243690 Rroxscaffold_3G00251260 Rroxscaffold_4G00298200 Rroxscaffold_4G00327440 Rroxscaffold_7G00192530
rosa_rugosa	Rorug01G0052300 Rorug01G0094500 Rorug03G0152700 Rorug03G0245200 Rorug03G0338800 Rorug03G0338900 Rorug04G0045100 Rorug04G0168400 Rorug04G0291600 Rorug07G0163300 Rorug07G0349700
rosa_samantha	Rh1AG146400 Rh1BG098400 Rh2CG327400 Rh3BG286300 Rh3BG323300 Rh4AG085300 Rh4AG137800 Rh4CG008600 Rh4CG032900 Rh4CG092500 Rh4CG180400 Rh4CG231200 Rh4CG274400 Rh4CG304800 Rh5AG384900 Rh5BG344700 Rh5CG355300 Rh6AG151000 Rh6BG302500 Rh6DG135900 Rh6DG138700 Rh6DG206300 Rh6DG319500 Rh7BG412300 Rh7CG476300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AccBSI	CCGCTC	1 cut(s)	349
AccII	CGCG	6 cut(s)	451, 582, 584, 592, 612, 619
AfiI	CCNNNNNNNGG	2 cut(s)	348, 491
AflIII	ACRYGT	1 cut(s)	449
AgsI	TTSAA	2 cut(s)	223, 280
AluBI	AGCT	5 cut(s)	196, 503, 512, 531, 577
AluI	AGCT	5 cut(s)	196, 503, 512, 531, 577
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	482
AspLEI	GCGC	8 cut(s)	446, 475, 528, 582, 584, 592, 612, 619
AspS9I	GGNCC	1 cut(s)	339
AsuC2I	CCSGG	1 cut(s)	486
AsuHPI	GGTGA	3 cut(s)	29, 34, 568
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	505
BccI	CCATC	1 cut(s)	8
BcnI	CCSGG	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	3 cut(s)	62, 416, 513
BfmI	CTRYAG	2 cut(s)	476, 639
BfoI	RGCGCY	1 cut(s)	476
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	1 cut(s)	339
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	2 cut(s)	37, 340
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	5 cut(s)	312, 385, 427, 479, 612
BpiI	GAAGAC	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 491
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	5 cut(s)	400, 442, 494, 550, 627
BseLI	CCNNNNNNNGG	2 cut(s)	348, 491
BseNI	ACTGG	1 cut(s)	126
BsePI	GCGCGC	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	188
Bsh1236I	CGCG	6 cut(s)	451, 582, 584, 592, 612, 619
BshFI	GGCC	1 cut(s)	484
BshNI	GGYRCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	505
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	374, 485
BslI	CCNNNNNNNGG	2 cut(s)	348, 491
BsmAI	GTCTC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp19I	CCATGG	1 cut(s)	79
BspANI	GGCC	1 cut(s)	484
BspFNI	CGCG	6 cut(s)	451, 582, 584, 592, 612, 619
BspLI	GGNNCC	2 cut(s)	37, 340
BspMAI	CTGCAG	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	35
BsrBI	CCGCTC	1 cut(s)	349
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	79
BssHII	GCGCGC	1 cut(s)	580
BssT1I	CCWWGG	1 cut(s)	79
Bst6I	CTCTTC	3 cut(s)	79, 165, 282
BstC8I	GCNNGC	6 cut(s)	331, 442, 494, 501, 533, 582
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	79
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	5 cut(s)	400, 442, 494, 550, 627
BstFNI	CGCG	6 cut(s)	451, 582, 584, 592, 612, 619
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	8 cut(s)	446, 475, 528, 582, 584, 592, 612, 619
BstMAI	GTCTC	1 cut(s)	240
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	2 cut(s)	476, 639
BstUI	CGCG	6 cut(s)	451, 582, 584, 592, 612, 619
BstV2I	GAAGAC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	484
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	5 cut(s)	400, 442, 494, 550, 627
Cac8I	GCNNGC	6 cut(s)	331, 442, 494, 501, 533, 582
CfoI	GCGC	8 cut(s)	446, 475, 528, 582, 584, 592, 612, 619
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	339
CviAII	CATG	2 cut(s)	80, 187
DdeI	CTNAG	1 cut(s)	72
DraI	TTTAAA	1 cut(s)	138
Eam1104I	CTCTTC	3 cut(s)	79, 165, 282
EarI	CTCTTC	3 cut(s)	79, 165, 282
Ecl136II	GAGCTC	1 cut(s)	503
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	339
Eco53kI	GAGCTC	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	503
EcoO65I	GGTNACC	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	2 cut(s)	83, 190
FaiI	YATR	6 cut(s)	81, 108, 180, 188, 254, 641
FatI	CATG	2 cut(s)	79, 186
FauI	CCCGC	8 cut(s)	220, 342, 377, 416, 425, 453, 485, 562
FokI	GGATG	5 cut(s)	407, 449, 501, 557, 634
FriOI	GRGCYC	1 cut(s)	505
FspBI	CTAG	3 cut(s)	62, 416, 513
GlaI	GCGC	8 cut(s)	445, 474, 527, 581, 583, 591, 611, 618
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	2 cut(s)	374, 485
HhaI	GCGC	8 cut(s)	446, 475, 528, 582, 584, 592, 612, 619
Hin1II	CATG	2 cut(s)	83, 190
Hin6I	GCGC	8 cut(s)	444, 473, 526, 580, 582, 590, 610, 617
HinP1I	GCGC	8 cut(s)	444, 473, 526, 580, 582, 590, 610, 617
HpaII	CCGG	2 cut(s)	374, 485
HphI	GGTGA	3 cut(s)	29, 34, 568
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	2 cut(s)	343, 507
Hpy188III	TCNNGA	2 cut(s)	167, 323
Hpy8I	GTNNAC	1 cut(s)	559
HpyAV	CCTTC	2 cut(s)	286, 671
HpyCH4V	TGCA	5 cut(s)	4, 333, 398, 478, 655
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	83, 190
HspAI	GCGC	8 cut(s)	444, 473, 526, 580, 582, 590, 610, 617
LmnI	GCTCC	1 cut(s)	523
LpnPI	CCDG	5 cut(s)	139, 387, 498, 539, 672
LweI	GCATC	5 cut(s)	312, 385, 427, 479, 612
MaeI	CTAG	3 cut(s)	62, 416, 513
MaeIII	GTNAC	2 cut(s)	22, 65
MbiI	CCGCTC	1 cut(s)	349
MboII	GAAGA	6 cut(s)	96, 182, 202, 277, 299, 528
MhlI	GDGCHC	1 cut(s)	505
MluI	ACGCGT	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	264
MseI	TTAA	1 cut(s)	137
MspA1I	CMGCKG	2 cut(s)	470, 577
MspI	CCGG	2 cut(s)	374, 485
MspR9I	CCNGG	1 cut(s)	486
MvnI	CGCG	6 cut(s)	451, 582, 584, 592, 612, 619
NciI	CCSGG	1 cut(s)	486
NcoI	CCATGG	1 cut(s)	79
NlaIII	CATG	2 cut(s)	83, 190
NlaIV	GGNNCC	2 cut(s)	37, 340
NmuCI	GTSAC	1 cut(s)	22
PaeR7I	CTCGAG	1 cut(s)	323
PauI	GCGCGC	1 cut(s)	580
Psp124BI	GAGCTC	1 cut(s)	505
PspEI	GGTNACC	1 cut(s)	65
PspN4I	GGNNCC	2 cut(s)	37, 340
PspPI	GGNCC	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	480
PteI	GCGCGC	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	577
SacI	GAGCTC	1 cut(s)	505
SaqAI	TTAA	1 cut(s)	137
Sau96I	GGNCC	1 cut(s)	339
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	1 cut(s)	505
SetI	ASST	9 cut(s)	24, 67, 198, 220, 505, 514, 533, 579, 682
SfaNI	GCATC	5 cut(s)	312, 385, 427, 479, 612
SfcI	CTRYAG	2 cut(s)	476, 639
Sfr274I	CTCGAG	1 cut(s)	323
SinI	GGWCC	1 cut(s)	339
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SspMI	CTAG	3 cut(s)	62, 416, 513
SstI	GAGCTC	1 cut(s)	505
StyD4I	CCNGG	1 cut(s)	484
StyI	CCWWGG	1 cut(s)	79
TaqI	TCGA	2 cut(s)	306, 324
TauI	GCSGC	3 cut(s)	360, 473, 499
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	203
TspGWI	ACGGA	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	339
XhoI	CTCGAG	1 cut(s)	323
XspI	CTAG	3 cut(s)	62, 416, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.