Rroxscaffold_2G00089150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000695
Physical Location & Seq
Forward (+)
11052042 .. 11052326
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089150.1

Sequence Viewer

Length: 285 bp
ATGGGAGAGCCCTTCCCATTGAGTCGCCTCGGCAGGCCATGTTACCAAGGATCTTGGTTCGGACAAGGTAGCTGCTCCCAATTTGCGGGAGAAGTGTCCTCTTCAAAAGGTGAAGACCTTGTTGTCGGCGCAAAGAAGCGTTTGGAGTTAGAGGTTGAAGTTCGGGAGAAAGTACAAGAAAGAAAATATTGTGAAGCTGCGGTGGAAGAACCGGTGGCTATAGAGGTTGAAGAAAAGGCTATTCGGTTGGTGGAAGTCACACAACGGGTATATAAGCACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.64

Weight (kDa)

5.5

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AciI CCGC 2 cut(s) 86, 200
AclWI GGATC 1 cut(s) 58
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 85
AgeI ACCGGT 1 cut(s) 211
AgsI TTSAA 3 cut(s) 105, 158, 230
AluBI AGCT 2 cut(s) 72, 197
AluI AGCT 2 cut(s) 72, 197
AlwI GGATC 1 cut(s) 58
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 72, 197
AsiGI ACCGGT 1 cut(s) 211
AspLEI GCGC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 122
BanII GRGCYC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 59, 184
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 2 cut(s) 73, 198
BlsI GCNGC 2 cut(s) 74, 199
BpiI GAAGAC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 28, 46
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse118I RCCGGY 1 cut(s) 211
BseDI CCNNGG 2 cut(s) 28, 46
BseLI CCNNNNNNNGG 1 cut(s) 85
BseXI GCAGC 2 cut(s) 59, 184
BshFI GGCC 1 cut(s) 37
BshTI ACCGGT 1 cut(s) 211
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 85
BsnI GGCC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 50
BspACI CCGC 2 cut(s) 86, 200
BspANI GGCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 28, 46
BssMI GATC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 35
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 1 cut(s) 53
BstMBI GATC 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 59, 184
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuRI GGCC 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 35
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 211
Csp6I GTAC 1 cut(s) 173
CspAI ACCGGT 1 cut(s) 211
CviAII CATG 1 cut(s) 39
CviJI RGCY 6 cut(s) 10, 37, 72, 197, 218, 239
CviKI_1 RGCY 6 cut(s) 10, 37, 72, 197, 218, 239
CviQI GTAC 1 cut(s) 173
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 42
FaiI YATR 4 cut(s) 40, 221, 271, 273
FatI CATG 1 cut(s) 38
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 73, 198
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 2 cut(s) 73, 198
GlaI GCGC 1 cut(s) 130
GluI GCNGC 2 cut(s) 73, 198
HaeIII GGCC 1 cut(s) 37
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 42
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 1 cut(s) 22
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 22
Hsp92II CATG 1 cut(s) 42
HspAI GCGC 1 cut(s) 129
Kzo9I GATC 1 cut(s) 50
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 2 cut(s) 19, 225
Lsp1109I GCAGC 2 cut(s) 59, 184
MaeIII GTNAC 2 cut(s) 41, 256
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 4 cut(s) 93, 125, 218, 242
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 1 cut(s) 80
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 4 cut(s) 38, 109, 145, 217
MspI CCGG 1 cut(s) 212
NdeII GATC 1 cut(s) 50
NlaIII CATG 1 cut(s) 42
NmeAIII GCCGAG 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 256
PinAI ACCGGT 1 cut(s) 211
PkrI GCNGC 2 cut(s) 74, 199
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PsuI RGATCY 1 cut(s) 50
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SatI GCNGC 2 cut(s) 73, 198
Sau3AI GATC 1 cut(s) 50
SchI GAGTC 1 cut(s) 31
SduI GDGCHC 1 cut(s) 12
SetI ASST 7 cut(s) 70, 74, 112, 120, 156, 199, 228
SfcI CTRYAG 1 cut(s) 219
Sse9I AATT 1 cut(s) 80
SsiI CCGC 2 cut(s) 86, 200
SspI AATATT 1 cut(s) 188
StyI CCWWGG 1 cut(s) 46
TasI AATT 1 cut(s) 80
TatI WGTACW 1 cut(s) 172
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 2 cut(s) 72, 197
Tsp45I GTSAC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.