Rorug04G0168400

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000695
Physical Location & Seq
Reverse (-)
29549820 .. 29550652
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0168400.1

Sequence Viewer

Length: 744 bp
ATGGAACCACGAACTCTGCAACTGATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATTTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATTTGGTTACTATTCTGGTGGCTCAGGCGGTTACAACAGTGGCTCTAACGTTTCTCTTAAGCTCAGCCTCAATCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

247

Amino Acids

26.41

Weight (kDa)

5.1

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 99 2.8e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 612
AccB7I CCANNNNNTGG 1 cut(s) 437
AccIII TCCGGA 1 cut(s) 728
AciI CCGC 1 cut(s) 678
AclI AACGTT 1 cut(s) 699
AcyI GRCGYC 1 cut(s) 609
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 3 cut(s) 353, 437, 599
AflII CTTAAG 1 cut(s) 707
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 575
AhlI ACTAGT 2 cut(s) 338, 467
AjnI CCWGG 3 cut(s) 116, 346, 564
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 328, 360
AluBI AGCT 5 cut(s) 31, 223, 434, 712, 734
AluI AGCT 5 cut(s) 31, 223, 434, 712, 734
Alw21I GWGCWC 2 cut(s) 201, 600
Alw26I GTCTC 1 cut(s) 221
Alw44I GTGCAC 1 cut(s) 596
Ama87I CYCGRG 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 728
AoxI GGCC 1 cut(s) 428
ApaLI GTGCAC 1 cut(s) 596
ApeKI GCWGC 3 cut(s) 74, 317, 734
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 440, 472
AseI ATTAAT 1 cut(s) 495
Asp700I GAANNNNTTC 2 cut(s) 340, 579
AspLEI GCGC 1 cut(s) 650
AspS9I GGNCC 3 cut(s) 381, 428, 462
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 554
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 2 cut(s) 381, 462
BaeGI GKGCMC 3 cut(s) 188, 330, 600
BamHI GGATCC 4 cut(s) 147, 359, 407, 440
BanII GRGCYC 1 cut(s) 286
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 2 cut(s) 201, 600
BbvI GCAGC 3 cut(s) 86, 304, 721
BccI CCATC 5 cut(s) 19, 50, 419, 476, 733
BceAI ACGGC 2 cut(s) 96, 616
BciT130I CCWGG 3 cut(s) 118, 348, 566
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 2 cut(s) 338, 467
BfaI CTAG 3 cut(s) 339, 468, 742
BfmI CTRYAG 1 cut(s) 192
BfrI CTTAAG 1 cut(s) 707
BisI GCNGC 3 cut(s) 75, 318, 735
BlpI GCTNAGC 1 cut(s) 713
BlsI GCNGC 3 cut(s) 76, 319, 736
Bme1390I CCNGG 4 cut(s) 79, 118, 348, 566
Bme18I GGWCC 2 cut(s) 381, 462
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 3 cut(s) 381, 428, 462
BmrFI CCNGG 4 cut(s) 79, 118, 348, 566
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 3 cut(s) 117, 203, 546
Bpu10I CCTNAGC 1 cut(s) 673
Bpu1102I GCTNAGC 1 cut(s) 713
BpuEI CTTGAG 2 cut(s) 137, 306
BpuMI CCSGG 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 609
BsaJI CCNNGG 2 cut(s) 330, 636
BsaWI WCCGGW 1 cut(s) 728
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 437, 599
Bse1I ACTGG 5 cut(s) 229, 358, 391, 400, 529
BseAI TCCGGA 1 cut(s) 728
BseBI CCWGG 3 cut(s) 118, 348, 566
BseDI CCNNGG 2 cut(s) 330, 636
BseGI GGATG 3 cut(s) 61, 536, 725
BseLI CCNNNNNNNGG 3 cut(s) 353, 437, 599
BseMII CTCAG 2 cut(s) 687, 727
BseNI ACTGG 5 cut(s) 229, 358, 391, 400, 529
BseRI GAGGAG 2 cut(s) 567, 570
BseSI GKGCMC 3 cut(s) 188, 330, 600
BseXI GCAGC 3 cut(s) 86, 304, 721
BseYI CCCAGC 1 cut(s) 39
BshFI GGCC 1 cut(s) 430
BsiHKAI GWGCWC 2 cut(s) 201, 600
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 2 cut(s) 78, 729
BslI CCNNNNNNNGG 3 cut(s) 353, 437, 599
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 5 cut(s) 188, 201, 286, 330, 600
Bsp13I TCCGGA 1 cut(s) 728
Bsp143I GATC 9 cut(s) 136, 147, 157, 359, 367, 407, 440, 488, 559
Bsp1720I GCTNAGC 1 cut(s) 713
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 1 cut(s) 678
BspANI GGCC 1 cut(s) 430
BspCNI CTCAG 2 cut(s) 686, 726
BspEI TCCGGA 1 cut(s) 728
BspTI CTTAAG 1 cut(s) 707
BsrI ACTGG 5 cut(s) 229, 358, 391, 400, 529
BssECI CCNNGG 2 cut(s) 330, 636
BssMI GATC 9 cut(s) 136, 147, 157, 359, 367, 407, 440, 488, 559
BssNI GRCGYC 1 cut(s) 609
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 3 cut(s) 118, 348, 566
Bst4CI ACNGT 1 cut(s) 689
Bst6I CTCTTC 2 cut(s) 296, 585
BstACI GRCGYC 1 cut(s) 609
BstAFI CTTAAG 1 cut(s) 707
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 673, 713
BstDSI CCRYGG 1 cut(s) 330
BstEII GGTNACC 1 cut(s) 617
BstF5I GGATG 3 cut(s) 61, 536, 725
BstHHI GCGC 1 cut(s) 650
BstKTI GATC 9 cut(s) 139, 150, 160, 362, 370, 410, 443, 491, 562
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 9 cut(s) 136, 147, 157, 359, 367, 407, 440, 488, 559
BstNI CCWGG 3 cut(s) 118, 348, 566
BstNSI RCATGY 1 cut(s) 242
BstPI GGTNACC 1 cut(s) 617
BstSCI CCNGG 4 cut(s) 77, 116, 346, 564
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 3 cut(s) 188, 330, 600
BstV1I GCAGC 3 cut(s) 86, 304, 721
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 6 cut(s) 147, 157, 359, 407, 440, 488
BstYI RGATCY 6 cut(s) 147, 157, 359, 407, 440, 488
BsuRI GGCC 1 cut(s) 430
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 3 cut(s) 61, 536, 725
BtsIMutI CAGTG 2 cut(s) 384, 694
Cac8I GCNNGC 1 cut(s) 432
CfoI GCGC 1 cut(s) 650
Cfr13I GGNCC 3 cut(s) 381, 428, 462
Csp6I GTAC 1 cut(s) 351
CviAII CATG 2 cut(s) 239, 331
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 2 cut(s) 673, 713
DpnI GATC 9 cut(s) 138, 149, 159, 361, 369, 409, 442, 490, 561
DpnII GATC 9 cut(s) 136, 147, 157, 359, 367, 407, 440, 488, 559
Eam1104I CTCTTC 2 cut(s) 296, 585
EarI CTCTTC 2 cut(s) 296, 585
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 2 cut(s) 381, 462
Eco88I CYCGRG 1 cut(s) 285
Eco91I GGTNACC 1 cut(s) 617
EcoO65I GGTNACC 1 cut(s) 617
EcoRII CCWGG 3 cut(s) 116, 346, 564
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 2 cut(s) 242, 334
FaiI YATR 3 cut(s) 234, 240, 332
FatI CATG 2 cut(s) 238, 330
Fnu4HI GCNGC 3 cut(s) 75, 318, 735
FokI GGATG 3 cut(s) 68, 523, 712
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 75, 318, 735
FspBI CTAG 3 cut(s) 339, 468, 742
GlaI GCGC 1 cut(s) 649
GluI GCNGC 3 cut(s) 75, 318, 735
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 3 cut(s) 117, 203, 546
HaeIII GGCC 1 cut(s) 430
HapII CCGG 2 cut(s) 78, 729
HhaI GCGC 1 cut(s) 650
Hin1I GRCGYC 1 cut(s) 609
Hin1II CATG 2 cut(s) 242, 334
Hin6I GCGC 1 cut(s) 648
HinP1I GCGC 1 cut(s) 648
HinfI GANTC 1 cut(s) 518
HpaII CCGG 2 cut(s) 78, 729
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 3 cut(s) 384, 465, 598
Hpy188I TCNGA 1 cut(s) 637
Hpy188III TCNNGA 5 cut(s) 134, 206, 271, 287, 729
Hpy8I GTNNAC 3 cut(s) 384, 465, 598
HpyAV CCTTC 1 cut(s) 635
HpyCH4III ACNGT 1 cut(s) 689
HpyCH4IV ACGT 2 cut(s) 609, 699
HpyCH4V TGCA 4 cut(s) 19, 309, 544, 598
HpyF3I CTNAG 2 cut(s) 673, 713
HpySE526I ACGT 2 cut(s) 609, 699
Hsp92I GRCGYC 1 cut(s) 609
Hsp92II CATG 2 cut(s) 242, 334
HspAI GCGC 1 cut(s) 648
Kpn2I TCCGGA 1 cut(s) 728
Kzo9I GATC 9 cut(s) 136, 147, 157, 359, 367, 407, 440, 488, 559
LmnI GCTCC 2 cut(s) 28, 731
Lsp1109I GCAGC 3 cut(s) 86, 304, 721
MaeI CTAG 3 cut(s) 339, 468, 742
MaeII ACGT 2 cut(s) 609, 699
MaeIII GTNAC 3 cut(s) 617, 656, 680
MalI GATC 9 cut(s) 138, 149, 159, 361, 369, 409, 442, 490, 561
MboI GATC 9 cut(s) 136, 147, 157, 359, 367, 407, 440, 488, 559
MboII GAAGA 3 cut(s) 313, 572, 637
MflI RGATCY 6 cut(s) 147, 157, 359, 407, 440, 488
MhlI GDGCHC 5 cut(s) 188, 201, 286, 330, 600
MluCI AATT 3 cut(s) 373, 421, 454
MroI TCCGGA 1 cut(s) 728
MroXI GAANNNNTTC 2 cut(s) 340, 579
MseI TTAA 3 cut(s) 180, 495, 708
MspA1I CMGCKG 2 cut(s) 223, 434
MspCI CTTAAG 1 cut(s) 707
MspI CCGG 2 cut(s) 78, 729
MspR9I CCNGG 4 cut(s) 79, 118, 348, 566
MvaI CCWGG 3 cut(s) 118, 348, 566
NciI CCSGG 1 cut(s) 79
NcoI CCATGG 1 cut(s) 330
NdeII GATC 9 cut(s) 136, 147, 157, 359, 367, 407, 440, 488, 559
NlaIII CATG 2 cut(s) 242, 334
NspI RCATGY 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 285
PciI ACATGT 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PdmI GAANNNNTTC 2 cut(s) 340, 579
PfeI GAWTC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 3 cut(s) 76, 319, 736
PscI ACATGT 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 495
Psp1406I AACGTT 1 cut(s) 699
Psp6I CCWGG 3 cut(s) 116, 346, 564
PspEI GGTNACC 1 cut(s) 617
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 3 cut(s) 116, 346, 564
PspPI GGNCC 3 cut(s) 381, 428, 462
PsuI RGATCY 6 cut(s) 147, 157, 359, 407, 440, 488
PvuII CAGCTG 2 cut(s) 223, 434
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SaqAI TTAA 3 cut(s) 180, 495, 708
SatI GCNGC 3 cut(s) 75, 318, 735
Sau3AI GATC 9 cut(s) 136, 147, 157, 359, 367, 407, 440, 488, 559
Sau96I GGNCC 3 cut(s) 381, 428, 462
ScrFI CCNGG 4 cut(s) 79, 118, 348, 566
SduI GDGCHC 5 cut(s) 188, 201, 286, 330, 600
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 2 cut(s) 381, 462
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 4 cut(s) 152, 285, 321, 707
SmoI CTYRAG 4 cut(s) 152, 285, 321, 707
SpeI ACTAGT 2 cut(s) 338, 467
Sse9I AATT 3 cut(s) 373, 421, 454
SsiI CCGC 1 cut(s) 678
SspMI CTAG 3 cut(s) 339, 468, 742
StyD4I CCNGG 4 cut(s) 77, 116, 346, 564
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 689
TaiI ACGT 2 cut(s) 612, 702
TaqI TCGA 3 cut(s) 51, 286, 414
TasI AATT 3 cut(s) 373, 421, 454
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 3 cut(s) 180, 495, 708
Tru9I TTAA 3 cut(s) 180, 495, 708
TscAI CASTG 2 cut(s) 391, 694
TseI GCWGC 3 cut(s) 74, 317, 734
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 2 cut(s) 391, 694
Van91I CCANNNNNTGG 1 cut(s) 437
Vha464I CTTAAG 1 cut(s) 707
VneI GTGCAC 1 cut(s) 596
VpaK11BI GGWCC 2 cut(s) 381, 462
VspI ATTAAT 1 cut(s) 495
XceI RCATGY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 285
XmnI GAANNNNTTC 2 cut(s) 340, 579
XspI CTAG 3 cut(s) 339, 468, 742
ZraI GACGTC 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.