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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 228, 399 |
| AclWI | GGATC | 2 cut(s) | 707, 771 |
| AcoI | YGGCCR | 1 cut(s) | 733 |
| AcsI | RAATTY | 3 cut(s) | 285, 705, 833 |
| AcuI | CTGAAG | 3 cut(s) | 263, 458, 489 |
| AfaI | GTAC | 1 cut(s) | 652 |
| AgsI | TTSAA | 7 cut(s) | 12, 61, 373, 523, 580, 982, 1025 |
| AluBI | AGCT | 3 cut(s) | 496, 959, 1055 |
| AluI | AGCT | 3 cut(s) | 496, 959, 1055 |
| Alw26I | GTCTC | 1 cut(s) | 971 |
| AlwI | GGATC | 2 cut(s) | 707, 771 |
| AoxI | GGCC | 1 cut(s) | 733 |
| ApeKI | GCWGC | 3 cut(s) | 23, 769, 937 |
| ApoI | RAATTY | 3 cut(s) | 285, 705, 833 |
| AsuC2I | CCSGG | 1 cut(s) | 875 |
| AsuHPI | GGTGA | 3 cut(s) | 126, 487, 1010 |
| BanII | GRGCYC | 1 cut(s) | 218 |
| BbvI | GCAGC | 3 cut(s) | 10, 781, 949 |
| BccI | CCATC | 1 cut(s) | 139 |
| BceAI | ACGGC | 2 cut(s) | 365, 379 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 135, 169, 929, 963 |
| BcnI | CCSGG | 1 cut(s) | 875 |
| BcoDI | GTCTC | 1 cut(s) | 971 |
| BfaI | CTAG | 4 cut(s) | 18, 30, 92, 1066 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 900 |
| BglII | AGATCT | 1 cut(s) | 77 |
| BisI | GCNGC | 5 cut(s) | 24, 229, 399, 770, 938 |
| BlsI | GCNGC | 5 cut(s) | 25, 230, 400, 771, 939 |
| Bme1390I | CCNGG | 1 cut(s) | 875 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 1 cut(s) | 875 |
| BmsI | GCATC | 3 cut(s) | 125, 218, 612 |
| BpuMI | CCSGG | 1 cut(s) | 875 |
| Bse1I | ACTGG | 1 cut(s) | 426 |
| Bse3DI | GCAATG | 3 cut(s) | 857, 910, 932 |
| BseGI | GGATG | 1 cut(s) | 808 |
| BseMI | GCAATG | 3 cut(s) | 857, 910, 932 |
| BseMII | CTCAG | 2 cut(s) | 1008, 1032 |
| BseNI | ACTGG | 1 cut(s) | 426 |
| BseXI | GCAGC | 3 cut(s) | 10, 781, 949 |
| BseYI | CCCAGC | 1 cut(s) | 1055 |
| BsgI | GTGCAG | 1 cut(s) | 498 |
| Bsh1285I | CGRYCG | 1 cut(s) | 325 |
| BshFI | GGCC | 1 cut(s) | 735 |
| BsiEI | CGRYCG | 1 cut(s) | 325 |
| BsiSI | CCGG | 2 cut(s) | 736, 874 |
| BslFI | GGGAC | 1 cut(s) | 560 |
| BsmAI | GTCTC | 1 cut(s) | 971 |
| BsmBI | CGTCTC | 1 cut(s) | 971 |
| BsmFI | GGGAC | 1 cut(s) | 560 |
| BsmI | GAATGC | 1 cut(s) | 863 |
| BsnI | GGCC | 1 cut(s) | 735 |
| Bsp1286I | GDGCHC | 1 cut(s) | 218 |
| Bsp1407I | TGTACA | 1 cut(s) | 650 |
| Bsp143I | GATC | 3 cut(s) | 77, 699, 776 |
| BspACI | CCGC | 2 cut(s) | 228, 399 |
| BspANI | GGCC | 1 cut(s) | 735 |
| BspCNI | CTCAG | 2 cut(s) | 1009, 1033 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspPI | GGATC | 2 cut(s) | 707, 771 |
| BsrDI | GCAATG | 3 cut(s) | 857, 910, 932 |
| BsrGI | TGTACA | 1 cut(s) | 650 |
| BsrI | ACTGG | 1 cut(s) | 426 |
| BssMI | GATC | 3 cut(s) | 77, 699, 776 |
| Bst4CI | ACNGT | 3 cut(s) | 326, 977, 1037 |
| Bst6I | CTCTTC | 2 cut(s) | 437, 465 |
| BstAUI | TGTACA | 1 cut(s) | 650 |
| BstDEI | CTNAG | 4 cut(s) | 204, 898, 1017, 1041 |
| BstF5I | GGATG | 1 cut(s) | 808 |
| BstKTI | GATC | 3 cut(s) | 80, 702, 779 |
| BstMAI | GTCTC | 1 cut(s) | 971 |
| BstMBI | GATC | 3 cut(s) | 77, 699, 776 |
| BstMCI | CGRYCG | 1 cut(s) | 325 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 32, 836, 891, 900, 970 |
| BstSCI | CCNGG | 1 cut(s) | 873 |
| BstV1I | GCAGC | 3 cut(s) | 10, 781, 949 |
| BstX2I | RGATCY | 1 cut(s) | 77 |
| BstYI | RGATCY | 1 cut(s) | 77 |
| BsuRI | GGCC | 1 cut(s) | 735 |
| BtsCI | GGATG | 1 cut(s) | 808 |
| BtsIMutI | CAGTG | 1 cut(s) | 973 |
| CseI | GACGC | 1 cut(s) | 953 |
| Csp6I | GTAC | 1 cut(s) | 651 |
| CviAII | CATG | 4 cut(s) | 487, 641, 760, 840 |
| CviQI | GTAC | 1 cut(s) | 651 |
| DdeI | CTNAG | 4 cut(s) | 204, 898, 1017, 1041 |
| DpnI | GATC | 3 cut(s) | 79, 701, 778 |
| DpnII | GATC | 3 cut(s) | 77, 699, 776 |
| EaeI | YGGCCR | 1 cut(s) | 733 |
| Eam1104I | CTCTTC | 2 cut(s) | 437, 465 |
| EarI | CTCTTC | 2 cut(s) | 437, 465 |
| Eco24I | GRGCYC | 1 cut(s) | 218 |
| Eco57I | CTGAAG | 3 cut(s) | 263, 458, 489 |
| EcoT22I | ATGCAT | 3 cut(s) | 58, 118, 646 |
| EcoT38I | GRGCYC | 1 cut(s) | 218 |
| Esp3I | CGTCTC | 1 cut(s) | 971 |
| FaeI | CATG | 4 cut(s) | 490, 644, 763, 843 |
| FaqI | GGGAC | 1 cut(s) | 560 |
| FatI | CATG | 4 cut(s) | 486, 640, 759, 839 |
| Fnu4HI | GCNGC | 5 cut(s) | 24, 229, 399, 770, 938 |
| FokI | GGATG | 1 cut(s) | 815 |
| FriOI | GRGCYC | 1 cut(s) | 218 |
| Fsp4HI | GCNGC | 5 cut(s) | 24, 229, 399, 770, 938 |
| FspBI | CTAG | 4 cut(s) | 18, 30, 92, 1066 |
| GluI | GCNGC | 5 cut(s) | 24, 229, 399, 770, 938 |
| GsaI | CCCAGC | 1 cut(s) | 1059 |
| HaeIII | GGCC | 1 cut(s) | 735 |
| HapII | CCGG | 2 cut(s) | 736, 874 |
| HgaI | GACGC | 1 cut(s) | 953 |
| Hin1II | CATG | 4 cut(s) | 490, 644, 763, 843 |
| HincII | GTYRAC | 1 cut(s) | 930 |
| HindII | GTYRAC | 1 cut(s) | 930 |
| HinfI | GANTC | 5 cut(s) | 311, 943, 951, 982, 1060 |
| HpaII | CCGG | 2 cut(s) | 736, 874 |
| HphI | GGTGA | 3 cut(s) | 126, 487, 1010 |
| Hpy166II | GTNNAC | 2 cut(s) | 651, 930 |
| Hpy188I | TCNGA | 7 cut(s) | 121, 298, 316, 438, 634, 781, 823 |
| Hpy188III | TCNNGA | 4 cut(s) | 308, 467, 1016, 1040 |
| Hpy8I | GTNNAC | 2 cut(s) | 651, 930 |
| Hpy99I | CGWCG | 1 cut(s) | 777 |
| HpyAV | CCTTC | 3 cut(s) | 18, 273, 586 |
| HpyCH4III | ACNGT | 3 cut(s) | 326, 977, 1037 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 32, 836, 891, 900, 970 |
| HpyF3I | CTNAG | 4 cut(s) | 204, 898, 1017, 1041 |
| Hsp92II | CATG | 4 cut(s) | 490, 644, 763, 843 |
| Kzo9I | GATC | 3 cut(s) | 77, 699, 776 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| Lsp1109I | GCAGC | 3 cut(s) | 10, 781, 949 |
| LweI | GCATC | 3 cut(s) | 125, 218, 612 |
| MaeI | CTAG | 4 cut(s) | 18, 30, 92, 1066 |
| MaeIII | GTNAC | 2 cut(s) | 64, 256 |
| MalI | GATC | 3 cut(s) | 79, 701, 778 |
| MboI | GATC | 3 cut(s) | 77, 699, 776 |
| MboII | GAAGA | 6 cut(s) | 202, 451, 454, 482, 502, 1004 |
| MflI | RGATCY | 1 cut(s) | 77 |
| MhlI | GDGCHC | 1 cut(s) | 218 |
| MluCI | AATT | 8 cut(s) | 285, 455, 550, 580, 705, 782, 833, 910 |
| MlyI | GAGTC | 1 cut(s) | 945 |
| MnlI | CCTC | 5 cut(s) | 376, 438, 466, 558, 810 |
| Mph1103I | ATGCAT | 3 cut(s) | 58, 118, 646 |
| MseI | TTAA | 4 cut(s) | 158, 233, 845, 909 |
| MspI | CCGG | 2 cut(s) | 736, 874 |
| MspR9I | CCNGG | 1 cut(s) | 875 |
| Mva1269I | GAATGC | 1 cut(s) | 863 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 32, 836, 891, 900, 970 |
| NciI | CCSGG | 1 cut(s) | 875 |
| NdeII | GATC | 3 cut(s) | 77, 699, 776 |
| NlaIII | CATG | 4 cut(s) | 490, 644, 763, 843 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NmuCI | GTSAC | 1 cut(s) | 64 |
| NsiI | ATGCAT | 3 cut(s) | 58, 118, 646 |
| PctI | GAATGC | 1 cut(s) | 863 |
| PfeI | GAWTC | 4 cut(s) | 311, 943, 982, 1060 |
| PkrI | GCNGC | 5 cut(s) | 25, 230, 400, 771, 939 |
| PleI | GAGTC | 1 cut(s) | 945 |
| PpsI | GAGTC | 1 cut(s) | 945 |
| PspFI | CCCAGC | 1 cut(s) | 1055 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PsuI | RGATCY | 1 cut(s) | 77 |
| RsaI | GTAC | 1 cut(s) | 652 |
| RsaNI | GTAC | 1 cut(s) | 651 |
| SaqAI | TTAA | 4 cut(s) | 158, 233, 845, 909 |
| SatI | GCNGC | 5 cut(s) | 24, 229, 399, 770, 938 |
| Sau3AI | GATC | 3 cut(s) | 77, 699, 776 |
| SchI | GAGTC | 1 cut(s) | 945 |
| ScrFI | CCNGG | 1 cut(s) | 875 |
| SduI | GDGCHC | 1 cut(s) | 218 |
| SfaNI | GCATC | 3 cut(s) | 125, 218, 612 |
| Sse9I | AATT | 8 cut(s) | 285, 455, 550, 580, 705, 782, 833, 910 |
| SsiI | CCGC | 2 cut(s) | 228, 399 |
| SspI | AATATT | 3 cut(s) | 46, 481, 1007 |
| SspMI | CTAG | 4 cut(s) | 18, 30, 92, 1066 |
| StyD4I | CCNGG | 1 cut(s) | 873 |
| TaaI | ACNGT | 3 cut(s) | 326, 977, 1037 |
| TaqI | TCGA | 5 cut(s) | 212, 321, 606, 949, 954 |
| TasI | AATT | 8 cut(s) | 285, 455, 550, 580, 705, 782, 833, 910 |
| TatI | WGTACW | 1 cut(s) | 650 |
| TauI | GCSGC | 2 cut(s) | 231, 401 |
| TfiI | GAWTC | 4 cut(s) | 311, 943, 982, 1060 |
| Tru1I | TTAA | 4 cut(s) | 158, 233, 845, 909 |
| Tru9I | TTAA | 4 cut(s) | 158, 233, 845, 909 |
| TscAI | CASTG | 1 cut(s) | 980 |
| TseFI | GTSAC | 1 cut(s) | 64 |
| TseI | GCWGC | 3 cut(s) | 23, 769, 937 |
| Tsp45I | GTSAC | 1 cut(s) | 64 |
| TspDTI | ATGAA | 4 cut(s) | 503, 629, 935, 1065 |
| TspRI | CASTG | 1 cut(s) | 980 |
| XapI | RAATTY | 3 cut(s) | 285, 705, 833 |
| XspI | CTAG | 4 cut(s) | 18, 30, 92, 1066 |
| Zsp2I | ATGCAT | 3 cut(s) | 58, 118, 646 |