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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 421, 478 |
| AcuI | CTGAAG | 1 cut(s) | 687 |
| AfaI | GTAC | 2 cut(s) | 531, 850 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 374, 420 |
| AgsI | TTSAA | 8 cut(s) | 12, 61, 242, 341, 593, 637, 721, 778 |
| AluBI | AGCT | 1 cut(s) | 694 |
| AluI | AGCT | 1 cut(s) | 694 |
| AoxI | GGCC | 1 cut(s) | 376 |
| ApeKI | GCWGC | 4 cut(s) | 23, 246, 554, 557 |
| AseI | ATTAAT | 1 cut(s) | 257 |
| AspS9I | GGNCC | 1 cut(s) | 385 |
| AsuHPI | GGTGA | 1 cut(s) | 126 |
| AvaII | GGWCC | 1 cut(s) | 385 |
| BauI | CACGAG | 1 cut(s) | 288 |
| BbvI | GCAGC | 4 cut(s) | 10, 233, 541, 544 |
| BccI | CCATC | 1 cut(s) | 139 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 135, 169 |
| BfaI | CTAG | 4 cut(s) | 18, 30, 92, 102 |
| BfmI | CTRYAG | 3 cut(s) | 247, 369, 558 |
| BglII | AGATCT | 1 cut(s) | 77 |
| BisI | GCNGC | 4 cut(s) | 24, 247, 555, 558 |
| BlsI | GCNGC | 4 cut(s) | 25, 248, 556, 559 |
| Bme18I | GGWCC | 1 cut(s) | 385 |
| BmgT120I | GGNCC | 1 cut(s) | 385 |
| BmiI | GGNNCC | 2 cut(s) | 6, 537 |
| BmsI | GCATC | 3 cut(s) | 104, 125, 810 |
| Bpu10I | CCTNAGC | 1 cut(s) | 158 |
| BsaJI | CCNNGG | 1 cut(s) | 388 |
| BsaWI | WCCGGW | 1 cut(s) | 538 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 374, 420 |
| Bse118I | RCCGGY | 1 cut(s) | 550 |
| Bse1I | ACTGG | 1 cut(s) | 219 |
| Bse3DI | GCAATG | 1 cut(s) | 498 |
| BseDI | CCNNGG | 1 cut(s) | 388 |
| BseGI | GGATG | 1 cut(s) | 499 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 374, 420 |
| BseMI | GCAATG | 1 cut(s) | 498 |
| BseNI | ACTGG | 1 cut(s) | 219 |
| BseRI | GAGGAG | 3 cut(s) | 278, 281, 686 |
| BseXI | GCAGC | 4 cut(s) | 10, 233, 541, 544 |
| BsgI | GTGCAG | 2 cut(s) | 66, 696 |
| BshFI | GGCC | 1 cut(s) | 378 |
| BsiSI | CCGG | 2 cut(s) | 539, 551 |
| BslFI | GGGAC | 2 cut(s) | 349, 758 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 374, 420 |
| BsmFI | GGGAC | 2 cut(s) | 349, 758 |
| BsmI | GAATGC | 1 cut(s) | 660 |
| BsnI | GGCC | 1 cut(s) | 378 |
| Bsp1407I | TGTACA | 2 cut(s) | 529, 848 |
| Bsp143I | GATC | 1 cut(s) | 77 |
| BspACI | CCGC | 2 cut(s) | 421, 478 |
| BspANI | GGCC | 1 cut(s) | 378 |
| BspHI | TCATGA | 1 cut(s) | 568 |
| BspLI | GGNNCC | 2 cut(s) | 6, 537 |
| BspMAI | CTGCAG | 2 cut(s) | 251, 562 |
| BsrDI | GCAATG | 1 cut(s) | 498 |
| BsrFI | RCCGGY | 1 cut(s) | 550 |
| BsrGI | TGTACA | 2 cut(s) | 529, 848 |
| BsrI | ACTGG | 1 cut(s) | 219 |
| BssAI | RCCGGY | 1 cut(s) | 550 |
| BssECI | CCNNGG | 1 cut(s) | 388 |
| BssMI | GATC | 1 cut(s) | 77 |
| BssSI | CACGAG | 1 cut(s) | 288 |
| BssT1I | CCWWGG | 1 cut(s) | 388 |
| Bst2BI | CACGAG | 1 cut(s) | 288 |
| Bst6I | CTCTTC | 2 cut(s) | 635, 663 |
| BstAUI | TGTACA | 2 cut(s) | 529, 848 |
| BstC8I | GCNNGC | 1 cut(s) | 376 |
| BstDEI | CTNAG | 2 cut(s) | 158, 487 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 372 |
| BstF5I | GGATG | 1 cut(s) | 499 |
| BstKTI | GATC | 1 cut(s) | 80 |
| BstMBI | GATC | 1 cut(s) | 77 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 80, 305 |
| BstSFI | CTRYAG | 3 cut(s) | 247, 369, 558 |
| BstV1I | GCAGC | 4 cut(s) | 10, 233, 541, 544 |
| BstX2I | RGATCY | 1 cut(s) | 77 |
| BstYI | RGATCY | 1 cut(s) | 77 |
| BsuRI | GGCC | 1 cut(s) | 378 |
| BtgZI | GCGATG | 1 cut(s) | 138 |
| BtsCI | GGATG | 1 cut(s) | 499 |
| Cac8I | GCNNGC | 1 cut(s) | 376 |
| CciI | TCATGA | 1 cut(s) | 568 |
| Cfr10I | RCCGGY | 1 cut(s) | 550 |
| Cfr13I | GGNCC | 1 cut(s) | 385 |
| Csp6I | GTAC | 2 cut(s) | 530, 849 |
| CviAII | CATG | 4 cut(s) | 203, 569, 685, 839 |
| CviJI | RGCY | 9 cut(s) | 5, 23, 130, 246, 308, 378, 554, 578, 694 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 23, 130, 246, 308, 378, 554, 578, 694 |
| CviQI | GTAC | 2 cut(s) | 530, 849 |
| DdeI | CTNAG | 2 cut(s) | 158, 487 |
| DpnI | GATC | 1 cut(s) | 79 |
| DpnII | GATC | 1 cut(s) | 77 |
| Eam1104I | CTCTTC | 2 cut(s) | 635, 663 |
| EarI | CTCTTC | 2 cut(s) | 635, 663 |
| Eco130I | CCWWGG | 1 cut(s) | 388 |
| Eco47I | GGWCC | 1 cut(s) | 385 |
| Eco57I | CTGAAG | 1 cut(s) | 687 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 372 |
| EcoO109I | RGGNCCY | 1 cut(s) | 385 |
| EcoT14I | CCWWGG | 1 cut(s) | 388 |
| EcoT22I | ATGCAT | 3 cut(s) | 58, 118, 844 |
| ErhI | CCWWGG | 1 cut(s) | 388 |
| FaeI | CATG | 4 cut(s) | 206, 572, 688, 842 |
| FaqI | GGGAC | 2 cut(s) | 349, 758 |
| FatI | CATG | 4 cut(s) | 202, 568, 684, 838 |
| FauI | CCCGC | 1 cut(s) | 414 |
| Fnu4HI | GCNGC | 4 cut(s) | 24, 247, 555, 558 |
| FokI | GGATG | 1 cut(s) | 506 |
| Fsp4HI | GCNGC | 4 cut(s) | 24, 247, 555, 558 |
| FspBI | CTAG | 4 cut(s) | 18, 30, 92, 102 |
| GluI | GCNGC | 4 cut(s) | 24, 247, 555, 558 |
| HaeIII | GGCC | 1 cut(s) | 378 |
| HapII | CCGG | 2 cut(s) | 539, 551 |
| Hin1II | CATG | 4 cut(s) | 206, 572, 688, 842 |
| HpaII | CCGG | 2 cut(s) | 539, 551 |
| HphI | GGTGA | 1 cut(s) | 126 |
| Hpy166II | GTNNAC | 1 cut(s) | 849 |
| Hpy188I | TCNGA | 2 cut(s) | 121, 832 |
| Hpy188III | TCNNGA | 3 cut(s) | 396, 569, 665 |
| Hpy8I | GTNNAC | 1 cut(s) | 849 |
| HpyAV | CCTTC | 8 cut(s) | 18, 236, 335, 362, 376, 499, 568, 784 |
| HpyCH4IV | ACGT | 1 cut(s) | 453 |
| HpyCH4V | TGCA | 9 cut(s) | 56, 83, 116, 249, 434, 470, 560, 713, 842 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 80, 305 |
| HpyF3I | CTNAG | 2 cut(s) | 158, 487 |
| HpySE526I | ACGT | 1 cut(s) | 453 |
| Hsp92II | CATG | 4 cut(s) | 206, 572, 688, 842 |
| Kzo9I | GATC | 1 cut(s) | 77 |
| LmnI | GCTCC | 2 cut(s) | 10, 416 |
| Lsp1109I | GCAGC | 4 cut(s) | 10, 233, 541, 544 |
| LweI | GCATC | 3 cut(s) | 104, 125, 810 |
| MaeI | CTAG | 4 cut(s) | 18, 30, 92, 102 |
| MaeII | ACGT | 1 cut(s) | 453 |
| MaeIII | GTNAC | 2 cut(s) | 64, 595 |
| MalI | GATC | 1 cut(s) | 79 |
| MboI | GATC | 1 cut(s) | 77 |
| MboII | GAAGA | 8 cut(s) | 90, 202, 527, 530, 557, 649, 652, 680 |
| MflI | RGATCY | 1 cut(s) | 77 |
| MluCI | AATT | 4 cut(s) | 254, 279, 748, 778 |
| MmeI | TCCRAC | 1 cut(s) | 306 |
| MnlI | CCTC | 8 cut(s) | 256, 259, 262, 315, 442, 636, 664, 756 |
| Mph1103I | ATGCAT | 3 cut(s) | 58, 118, 844 |
| MseI | TTAA | 4 cut(s) | 233, 257, 582, 825 |
| MspI | CCGG | 2 cut(s) | 539, 551 |
| Mva1269I | GAATGC | 1 cut(s) | 660 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 80, 305 |
| NdeII | GATC | 1 cut(s) | 77 |
| NlaIII | CATG | 4 cut(s) | 206, 572, 688, 842 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 537 |
| NmuCI | GTSAC | 1 cut(s) | 64 |
| NsiI | ATGCAT | 3 cut(s) | 58, 118, 844 |
| PagI | TCATGA | 1 cut(s) | 568 |
| PctI | GAATGC | 1 cut(s) | 660 |
| PkrI | GCNGC | 4 cut(s) | 25, 248, 556, 559 |
| PpuMI | RGGWCCY | 1 cut(s) | 385 |
| PshBI | ATTAAT | 1 cut(s) | 257 |
| Psp5II | RGGWCCY | 1 cut(s) | 385 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 537 |
| PspPI | GGNCC | 1 cut(s) | 385 |
| PspPPI | RGGWCCY | 1 cut(s) | 385 |
| PstI | CTGCAG | 2 cut(s) | 251, 562 |
| PsuI | RGATCY | 1 cut(s) | 77 |
| RsaI | GTAC | 2 cut(s) | 531, 850 |
| RsaNI | GTAC | 2 cut(s) | 530, 849 |
| SaqAI | TTAA | 4 cut(s) | 233, 257, 582, 825 |
| SatI | GCNGC | 4 cut(s) | 24, 247, 555, 558 |
| Sau3AI | GATC | 1 cut(s) | 77 |
| Sau96I | GGNCC | 1 cut(s) | 385 |
| SfaNI | GCATC | 3 cut(s) | 104, 125, 810 |
| SfcI | CTRYAG | 3 cut(s) | 247, 369, 558 |
| SinI | GGWCC | 1 cut(s) | 385 |
| Sse9I | AATT | 4 cut(s) | 254, 279, 748, 778 |
| SsiI | CCGC | 2 cut(s) | 421, 478 |
| SspI | AATATT | 2 cut(s) | 46, 679 |
| SspMI | CTAG | 4 cut(s) | 18, 30, 92, 102 |
| StyI | CCWWGG | 1 cut(s) | 388 |
| TaiI | ACGT | 1 cut(s) | 456 |
| TaqI | TCGA | 1 cut(s) | 804 |
| TasI | AATT | 4 cut(s) | 254, 279, 748, 778 |
| TatI | WGTACW | 2 cut(s) | 529, 848 |
| Tru1I | TTAA | 4 cut(s) | 233, 257, 582, 825 |
| Tru9I | TTAA | 4 cut(s) | 233, 257, 582, 825 |
| TseFI | GTSAC | 1 cut(s) | 64 |
| TseI | GCWGC | 4 cut(s) | 23, 246, 554, 557 |
| Tsp45I | GTSAC | 1 cut(s) | 64 |
| TspDTI | ATGAA | 4 cut(s) | 197, 557, 701, 827 |
| VpaK11BI | GGWCC | 1 cut(s) | 385 |
| VspI | ATTAAT | 1 cut(s) | 257 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 372 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 386 |
| XspI | CTAG | 4 cut(s) | 18, 30, 92, 102 |
| Zsp2I | ATGCAT | 3 cut(s) | 58, 118, 844 |