RLG00000033981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000695
Physical Location & Seq
Forward (+)
34968131 .. 34972109
3979 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033981

Sequence Viewer

Length: 735 bp
ATGGCTCCTTCAAAGACAAAGGTTGCCTCTAGAGCAAGGGAAAATATTTTGAAGGCACTAAGAGTGACAAGAGCGAGATTTGCACCTACTGCAGCAACTCCAGCTAAATCGAGTGCATCAGAACATAAGCCATCCCTAAAGAGATCAATTTCATTGAATGAAAAGACCACAAAGAAAAAGGCTGAGGAGGTTGCTAACCCTGCAAAGAAGCGCTTAGAGTTAGTTGATGACATAGATGAGAAAATAGAAGAACAAAAAGGCAAGGGGTTGCTGGTGGAAGTGGAAGTTGGTATAGAAGTAGCAGCTACTATAGAAGTGGCAGCTGCTATAGAGCATGTTCATGCTGCTCCTATAAAGGTTTGTGCTGCTCCTATTAAGTCAGTTGAAGTTACACAGGAGCCGAGGGACCTCATACTTCAATCCCCTCCCCAAACTGACAAGAAACAACCAAATAAGGCCGCAGGTAAGGGTTCGAAGAAAAGGAAAAGGCAAACAGCTGGTGATGAAGAGGAGTATATTGATTTGAAGAAGCGGCCAAAAGATTACCCTTCACCTTTGAAGTGCTTGTGGTTGTGGGGGAGAGATGCACTAGCCGATGGGAAGACAATCTCTTTCATGCTAACAGATAAAATATTTGGGATCAATAGGAAGCAATATCTATATAAGGGAAACATTCATGCATTGTGTACCATGAGTGAACTATCAGGCGGCGTCATCTGCATGTATATGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.02

Weight (kDa)

9.56

Isoelectric Point (pI)

64.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 452
AciI CCGC 3 cut(s) 459, 532, 708
AclWI GGATC 1 cut(s) 647
AcoI YGGCCR 1 cut(s) 533
AcyI GRCGYC 1 cut(s) 711
AfaI GTAC 1 cut(s) 688
AfeI AGCGCT 1 cut(s) 212
AgsI TTSAA 7 cut(s) 12, 52, 157, 386, 419, 526, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 4 cut(s) 104, 305, 323, 497
AluI AGCT 4 cut(s) 104, 305, 323, 497
AlwI GGATC 1 cut(s) 647
Aor51HI AGCGCT 1 cut(s) 212
AoxI GGCC 2 cut(s) 456, 533
ApeKI GCWGC 6 cut(s) 92, 302, 320, 323, 344, 365
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 512, 543
AsuII TTCGAA 1 cut(s) 473
AvaII GGWCC 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 608
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 6 cut(s) 104, 310, 314, 331, 332, 352
BccI CCATC 2 cut(s) 139, 590
BfaI CTAG 2 cut(s) 30, 590
BfmI CTRYAG 3 cut(s) 90, 309, 327
BfoI RGCGCY 1 cut(s) 214
BfuAI ACCTGC 1 cut(s) 452
BisI GCNGC 9 cut(s) 93, 303, 321, 324, 345, 366, 459, 533, 709
BlsI GCNGC 9 cut(s) 94, 304, 322, 325, 346, 367, 460, 534, 710
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 3 cut(s) 6, 399, 407
BmsI GCATC 2 cut(s) 125, 574
BpiI GAAGAC 1 cut(s) 608
BpmI CTGGAG 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 183
Bpu14I TTCGAA 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 711
BsaJI CCNNGG 1 cut(s) 401
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 2 cut(s) 200, 524
BseXI GCAGC 6 cut(s) 104, 310, 314, 331, 332, 352
BshFI GGCC 2 cut(s) 458, 535
BslFI GGGAC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 2 cut(s) 458, 535
Bsp119I TTCGAA 1 cut(s) 473
Bsp143I GATC 2 cut(s) 143, 639
BspACI CCGC 3 cut(s) 459, 532, 708
BspANI GGCC 2 cut(s) 458, 535
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 3 cut(s) 6, 399, 407
BspMAI CTGCAG 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 452
BspPI GGATC 1 cut(s) 647
BspT104I TTCGAA 1 cut(s) 473
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 2 cut(s) 143, 639
BssNI GRCGYC 1 cut(s) 711
Bst6I CTCTTC 1 cut(s) 501
BstACI GRCGYC 1 cut(s) 711
BstAPI GCANNNNNTGC 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 473
BstDEI CTNAG 3 cut(s) 59, 183, 214
BstF5I GGATG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 2 cut(s) 146, 642
BstMBI GATC 2 cut(s) 143, 639
BstMWI GCNNNNNNNGC 6 cut(s) 32, 80, 89, 101, 200, 717
BstNSI RCATGY 2 cut(s) 338, 724
BstSFI CTRYAG 3 cut(s) 90, 309, 327
BstV1I GCAGC 6 cut(s) 104, 310, 314, 331, 332, 352
BstV2I GAAGAC 1 cut(s) 608
BsuRI GGCC 2 cut(s) 458, 535
BtsCI GGATG 1 cut(s) 131
BveI ACCTGC 1 cut(s) 452
CfoI GCGC 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 406
CseI GACGC 1 cut(s) 700
Csp6I GTAC 1 cut(s) 687
CviAII CATG 6 cut(s) 335, 341, 616, 677, 691, 721
CviQI GTAC 1 cut(s) 687
DdeI CTNAG 3 cut(s) 59, 183, 214
DpnI GATC 2 cut(s) 145, 641
DpnII GATC 2 cut(s) 143, 639
EaeI YGGCCR 1 cut(s) 533
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 406
Eco47III AGCGCT 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 682
FaeI CATG 6 cut(s) 338, 344, 619, 680, 694, 724
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 1 cut(s) 419
FatI CATG 6 cut(s) 334, 340, 615, 676, 690, 720
Fnu4HI GCNGC 9 cut(s) 93, 303, 321, 324, 345, 366, 459, 533, 709
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 9 cut(s) 93, 303, 321, 324, 345, 366, 459, 533, 709
FspBI CTAG 2 cut(s) 30, 590
GlaI GCGC 1 cut(s) 212
GluI GCNGC 9 cut(s) 93, 303, 321, 324, 345, 366, 459, 533, 709
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 214
HaeIII GGCC 2 cut(s) 458, 535
HgaI GACGC 1 cut(s) 700
HhaI GCGC 1 cut(s) 213
Hin1I GRCGYC 1 cut(s) 711
Hin1II CATG 6 cut(s) 338, 344, 619, 680, 694, 724
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HphI GGTGA 2 cut(s) 512, 543
Hpy166II GTNNAC 2 cut(s) 687, 698
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 2 cut(s) 687, 698
HpyAV CCTTC 3 cut(s) 18, 46, 558
HpyCH4V TGCA 7 cut(s) 83, 92, 116, 203, 587, 680, 720
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 80, 89, 101, 200, 717
HpyF3I CTNAG 3 cut(s) 59, 183, 214
Hsp92I GRCGYC 1 cut(s) 711
Hsp92II CATG 6 cut(s) 338, 344, 619, 680, 694, 724
HspAI GCGC 1 cut(s) 211
Kzo9I GATC 2 cut(s) 143, 639
LmnI GCTCC 4 cut(s) 10, 352, 373, 397
LpnPI CCDG 7 cut(s) 114, 213, 257, 380, 447, 483, 690
Lsp1109I GCAGC 6 cut(s) 104, 310, 314, 331, 332, 352
LweI GCATC 2 cut(s) 125, 574
MaeI CTAG 2 cut(s) 30, 590
MaeIII GTNAC 2 cut(s) 64, 388
MalI GATC 2 cut(s) 145, 641
MboI GATC 2 cut(s) 143, 639
MboII GAAGA 5 cut(s) 260, 487, 518, 538, 613
MluCI AATT 1 cut(s) 147
MnlI CCTC 7 cut(s) 37, 178, 181, 396, 419, 435, 502
Mph1103I ATGCAT 1 cut(s) 682
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 3 cut(s) 339, 719, 725
MspA1I CMGCKG 2 cut(s) 323, 497
MwoI GCNNNNNNNGC 6 cut(s) 32, 80, 89, 101, 200, 717
NdeII GATC 2 cut(s) 143, 639
NlaIII CATG 6 cut(s) 338, 344, 619, 680, 694, 724
NlaIV GGNNCC 3 cut(s) 6, 399, 407
NmeAIII GCCGAG 1 cut(s) 426
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 682
NspI RCATGY 2 cut(s) 338, 724
NspV TTCGAA 1 cut(s) 473
PkrI GCNGC 9 cut(s) 94, 304, 322, 325, 346, 367, 460, 534, 710
PpuMI RGGWCCY 1 cut(s) 406
Psp5II RGGWCCY 1 cut(s) 406
PspN4I GGNNCC 3 cut(s) 6, 399, 407
PspPI GGNCC 1 cut(s) 406
PspPPI RGGWCCY 1 cut(s) 406
PstI CTGCAG 1 cut(s) 94
PvuII CAGCTG 2 cut(s) 323, 497
RsaI GTAC 1 cut(s) 688
RsaNI GTAC 1 cut(s) 687
RseI CAYNNNNRTG 3 cut(s) 339, 719, 725
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 9 cut(s) 93, 303, 321, 324, 345, 366, 459, 533, 709
Sau3AI GATC 2 cut(s) 143, 639
Sau96I GGNCC 1 cut(s) 406
SfaNI GCATC 2 cut(s) 125, 574
SfcI CTRYAG 3 cut(s) 90, 309, 327
SfuI TTCGAA 1 cut(s) 473
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 3 cut(s) 339, 719, 725
Sse9I AATT 1 cut(s) 147
SsiI CCGC 3 cut(s) 459, 532, 708
SspI AATATT 2 cut(s) 46, 633
SspMI CTAG 2 cut(s) 30, 590
TaqI TCGA 2 cut(s) 110, 473
TasI AATT 1 cut(s) 147
TauI GCSGC 3 cut(s) 461, 535, 711
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 6 cut(s) 92, 302, 320, 323, 344, 365
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 6 cut(s) 141, 174, 329, 519, 604, 665
VpaK11BI GGWCC 1 cut(s) 406
XbaI TCTAGA 1 cut(s) 29
XceI RCATGY 2 cut(s) 338, 724
XspI CTAG 2 cut(s) 30, 590
Zsp2I ATGCAT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.