Rh6BG302500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000695
Physical Location & Seq
Reverse (-)
53269824 .. 53286804
16981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG302500.1

Sequence Viewer

Length: 267 bp
ATGCTGTATGCACCGAATCCAGTCCACAACCACTCTCCAACAACTGACCAACCCATCAAGAGGCGTACGAACCTCGAGTGCACAACCGGAGAGGGCAACAACTCCTCTTCCGTTCCCATTCCTCAGTTACACTTGGTGGATGACATTGCGAAGGAAGTGGAAGAAGATAAGGTTGTACAGGTTCCGGTGGAAGAACCAGCTGCTGCAGTAGTTCATGAGAAGGCTGTTGAGTTGGTTGAAGTTACACAGCAGTGCTCCACACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.64

Weight (kDa)

4.73

Isoelectric Point (pI)

60.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 136
AfaI GTAC 2 cut(s) 67, 177
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 1 cut(s) 239
AleI CACNNNNGTG 1 cut(s) 250
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw21I GWGCWC 2 cut(s) 83, 257
Alw44I GTGCAC 1 cut(s) 79
AlwNI CAGNNNCTG 1 cut(s) 203
Ama87I CYCGRG 1 cut(s) 74
ApaLI GTGCAC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 200, 203
AvaI CYCGRG 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 83
Bbv12I GWGCWC 2 cut(s) 83, 257
BbvI GCAGC 2 cut(s) 187, 190
BccI CCATC 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 2 cut(s) 201, 204
BlsI GCNGC 2 cut(s) 202, 205
BmeT110I CYCGRG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 183
BsaWI WCCGGW 2 cut(s) 86, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 144
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 2 cut(s) 187, 190
BsiHKAI GWGCWC 2 cut(s) 83, 257
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 2 cut(s) 87, 185
BsiWI CGTACG 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 60
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 2 cut(s) 83, 257
Bsp1407I TGTACA 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 136
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 183
BspMAI CTGCAG 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 175
BsrI ACTGG 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 112
BstAUI TGTACA 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 187, 190
BtsCI GGATG 1 cut(s) 145
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 257
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 214
Csp6I GTAC 2 cut(s) 66, 176
CviAII CATG 1 cut(s) 215
CviJI RGCY 2 cut(s) 200, 224
CviKI_1 RGCY 2 cut(s) 200, 224
CviQI GTAC 2 cut(s) 66, 176
DdeI CTNAG 1 cut(s) 123
DraIII CACNNNGTG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 74
FaeI CATG 1 cut(s) 218
FaiI YATR 2 cut(s) 9, 216
FatI CATG 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 201, 204
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 201, 204
GluI GCNGC 2 cut(s) 201, 204
HapII CCGG 2 cut(s) 87, 185
Hin1II CATG 1 cut(s) 218
HinfI GANTC 1 cut(s) 16
HpaII CCGG 2 cut(s) 87, 185
Hpy166II GTNNAC 2 cut(s) 25, 81
Hpy188III TCNNGA 2 cut(s) 58, 215
Hpy8I GTNNAC 2 cut(s) 25, 81
HpyAV CCTTC 2 cut(s) 145, 214
HpyCH4V TGCA 3 cut(s) 11, 81, 206
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 1 cut(s) 218
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 5 cut(s) 33, 100, 164, 198, 210
Lsp1109I GCAGC 2 cut(s) 187, 190
MaeIII GTNAC 2 cut(s) 126, 241
MboII GAAGA 4 cut(s) 99, 173, 176, 203
MhlI GDGCHC 2 cut(s) 83, 257
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 5 cut(s) 54, 83, 85, 115, 132
MslI CAYNNNNRTG 1 cut(s) 250
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 2 cut(s) 87, 185
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 183
OliI CACNNNNGTG 1 cut(s) 250
PaeR7I CTCGAG 1 cut(s) 74
PagI TCATGA 1 cut(s) 214
PfeI GAWTC 1 cut(s) 16
Pfl23II CGTACG 1 cut(s) 65
PkrI GCNGC 2 cut(s) 202, 205
PspLI CGTACG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 183
PspXI VCTCGAGB 1 cut(s) 74
PstI CTGCAG 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 67, 177
RsaNI GTAC 2 cut(s) 66, 176
RseI CAYNNNNRTG 1 cut(s) 250
SatI GCNGC 2 cut(s) 201, 204
SduI GDGCHC 2 cut(s) 83, 257
SetI ASST 4 cut(s) 75, 174, 183, 202
SfcI CTRYAG 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
TaqI TCGA 1 cut(s) 75
TatI WGTACW 1 cut(s) 175
TfiI GAWTC 1 cut(s) 16
TscAI CASTG 1 cut(s) 257
TseI GCWGC 2 cut(s) 200, 203
TspDTI ATGAA 1 cut(s) 203
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 1 cut(s) 257
VneI GTGCAC 1 cut(s) 79
XhoI CTCGAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.