Rh1AG146400

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000695
Physical Location & Seq
Reverse (-)
27630028 .. 27632654
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG146400.1

Sequence Viewer

Length: 840 bp
ATGGCTCCTTCAAAATCTAGGGCTGCCACTAGAGCAAGGCAGAATATTATCAATGCATTGAAAGTGACAAGAGCGAGATCTGCACCAGAACTTGCATATTCTGGTCAGTCAAATGCATCAGAAAATAAGCCATCACCAAAGAGAGCAACGACATCGTTAAGGGTCAGCAAGTCATTGACAAAGCATAAGAAGAAAAAGTCATCTAAGGCATCCAGCCCAGAAAAAAGCGGCTTAAAGTTGCTGAAGCGTGGTTGTGTTACAATGCACAGGATTGTGAGAAGGAAAATTCTTGGGTCTGAAATCAATCCTGATTCGGAAATCGACCATGCAACAATGTGGATAAAGACACGGCAGGATAAACACGGCAACTTCAAAGATGTTGAGGTAGAGAAGTGTGCCGCAGACATAGAAAAGCTGAAGAGACAAGTGAGTGACGGTGAGGTGACATCTTGTGGCACTGATGATGTATTGACAAAGGCTCTAGTGGAAGAACCAGCTGCTGTAGTAGTTCATGAGAAGGCTATTGAGTTGGTTGAAGTTACACAACAGAAACAACCAAATAAGTCCAGTAAGGGTTTGAAGAAGAGGAAAATGCAATTAGGCAGTCCTGAAGAGGAGAATATTGACATGAAGAAGCTACCAAAAGATTACCCTGCACCTTTGAAGTGCTTGTGGATTTGGACAAGGGACAATTTGGCAAATGGGAGGACAATCTCCTTCAATTTGGAACAGAAAGTGTTTGGCATCGACATGAAGCATTATCTGTTTAAGTCAGACATTCATGCATTGTGTACAATGACTGAACAATCAGGTGGAGTAATCTCAATGTATATATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

279

Amino Acids

31.28

Weight (kDa)

9.76

Isoelectric Point (pI)

60.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 228, 399
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 3 cut(s) 263, 437, 630
AfaI GTAC 1 cut(s) 793
AgsI TTSAA 7 cut(s) 12, 61, 373, 536, 580, 664, 721
AluBI AGCT 3 cut(s) 415, 497, 637
AluI AGCT 3 cut(s) 415, 497, 637
Alw26I GTCTC 1 cut(s) 415
AlwNI CAGNNNCTG 1 cut(s) 500
ApeKI GCWGC 2 cut(s) 23, 497
ApoI RAATTY 1 cut(s) 285
AsuHPI GGTGA 3 cut(s) 126, 449, 454
BbvI GCAGC 2 cut(s) 10, 484
BccI CCATC 1 cut(s) 139
BceAI ACGGC 2 cut(s) 365, 379
BcgI CGANNNNNNTGC 2 cut(s) 135, 169
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 3 cut(s) 18, 30, 482
BfmI CTRYAG 1 cut(s) 501
BglII AGATCT 1 cut(s) 77
BisI GCNGC 4 cut(s) 24, 229, 399, 498
BlsI GCNGC 4 cut(s) 25, 230, 400, 499
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 3 cut(s) 125, 218, 753
Bse1I ACTGG 1 cut(s) 567
BseGI GGATG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 567
BseRI GAGGAG 1 cut(s) 629
BseXI GCAGC 2 cut(s) 10, 484
BsgI GTGCAG 2 cut(s) 66, 639
BslFI GGGAC 1 cut(s) 701
BsmAI GTCTC 1 cut(s) 415
BsmFI GGGAC 1 cut(s) 701
Bsp1407I TGTACA 1 cut(s) 791
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 2 cut(s) 228, 399
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 791
BsrI ACTGG 1 cut(s) 567
BssMI GATC 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 437
Bst6I CTCTTC 3 cut(s) 413, 578, 606
BstAUI TGTACA 1 cut(s) 791
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 209
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 2 cut(s) 32, 80
BstSFI CTRYAG 1 cut(s) 501
BstV1I GCAGC 2 cut(s) 10, 484
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BtsCI GGATG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 456
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 1 cut(s) 511
Csp6I GTAC 1 cut(s) 792
CviAII CATG 5 cut(s) 326, 512, 628, 751, 782
CviQI GTAC 1 cut(s) 792
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
Eam1104I CTCTTC 3 cut(s) 413, 578, 606
EarI CTCTTC 3 cut(s) 413, 578, 606
Eco57I CTGAAG 3 cut(s) 263, 437, 630
EcoT22I ATGCAT 3 cut(s) 58, 118, 787
FaeI CATG 5 cut(s) 329, 515, 631, 754, 785
FaqI GGGAC 1 cut(s) 701
FatI CATG 5 cut(s) 325, 511, 627, 750, 781
Fnu4HI GCNGC 4 cut(s) 24, 229, 399, 498
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 4 cut(s) 24, 229, 399, 498
FspBI CTAG 3 cut(s) 18, 30, 482
GluI GCNGC 4 cut(s) 24, 229, 399, 498
Hin1II CATG 5 cut(s) 329, 515, 631, 754, 785
HinfI GANTC 1 cut(s) 311
HphI GGTGA 3 cut(s) 126, 449, 454
Hpy166II GTNNAC 1 cut(s) 792
Hpy188I TCNGA 4 cut(s) 121, 298, 316, 775
Hpy188III TCNNGA 3 cut(s) 308, 512, 608
Hpy8I GTNNAC 1 cut(s) 792
HpyAV CCTTC 4 cut(s) 18, 273, 511, 727
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4V TGCA 9 cut(s) 56, 83, 95, 116, 265, 329, 595, 656, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 80
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 5 cut(s) 329, 515, 631, 754, 785
Kzo9I GATC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 2 cut(s) 10, 484
LweI GCATC 3 cut(s) 125, 218, 753
MaeI CTAG 3 cut(s) 18, 30, 482
MaeIII GTNAC 5 cut(s) 64, 256, 431, 442, 538
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 7 cut(s) 202, 430, 500, 592, 595, 623, 643
MflI RGATCY 1 cut(s) 77
MluCI AATT 4 cut(s) 285, 596, 691, 721
MnlI CCTC 5 cut(s) 376, 433, 579, 607, 699
Mph1103I ATGCAT 3 cut(s) 58, 118, 787
MseI TTAA 3 cut(s) 158, 233, 768
MslI CAYNNNNRTG 1 cut(s) 749
MspA1I CMGCKG 1 cut(s) 497
MwoI GCNNNNNNNGC 2 cut(s) 32, 80
NdeII GATC 1 cut(s) 77
NlaIII CATG 5 cut(s) 329, 515, 631, 754, 785
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 64, 431, 442
NsiI ATGCAT 3 cut(s) 58, 118, 787
PagI TCATGA 1 cut(s) 511
PfeI GAWTC 1 cut(s) 311
PkrI GCNGC 4 cut(s) 25, 230, 400, 499
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 1 cut(s) 793
RsaNI GTAC 1 cut(s) 792
RseI CAYNNNNRTG 1 cut(s) 749
SaqAI TTAA 3 cut(s) 158, 233, 768
SatI GCNGC 4 cut(s) 24, 229, 399, 498
Sau3AI GATC 1 cut(s) 77
SetI ASST 7 cut(s) 387, 417, 444, 499, 639, 661, 814
SfaNI GCATC 3 cut(s) 125, 218, 753
SfcI CTRYAG 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 749
Sse9I AATT 4 cut(s) 285, 596, 691, 721
SsiI CCGC 2 cut(s) 228, 399
SspI AATATT 2 cut(s) 46, 622
SspMI CTAG 3 cut(s) 18, 30, 482
TaaI ACNGT 1 cut(s) 437
TaqI TCGA 2 cut(s) 321, 747
TasI AATT 4 cut(s) 285, 596, 691, 721
TatI WGTACW 1 cut(s) 791
TauI GCSGC 2 cut(s) 231, 401
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 3 cut(s) 158, 233, 768
Tru9I TTAA 3 cut(s) 158, 233, 768
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 3 cut(s) 64, 431, 442
TseI GCWGC 2 cut(s) 23, 497
Tsp45I GTSAC 3 cut(s) 64, 431, 442
TspDTI ATGAA 4 cut(s) 500, 644, 767, 770
TspRI CASTG 1 cut(s) 463
XapI RAATTY 1 cut(s) 285
XspI CTAG 3 cut(s) 18, 30, 482
Zsp2I ATGCAT 3 cut(s) 58, 118, 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.