Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000695

Physical Location & Seq

Genomic Coordinates Reverse (-)

87300634 .. 87303075

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036983

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTCCTTCAAAGACAAAGGCTGCCACTAGAGCAAGGCAGAATATTATCAATGCATTGAAAGTGACACGAGCGAGGTCTGCACCAGAACCACCAACTTCTAAGGAGGAGGCAGAGAAAATTGTGGCACGGGAGAGAGCATATTGGGCTGAAACTATAAGGAGGTTGGAAGCAAAAGTTGATGGGAAAACCCTTCCCAATGAGTCCCCTCCGGTAGGCCAGAAGGACCTTGGTTCGGGACAAGGTAGTTGCTCCAATTTACGGGAGAAGTGTGCATTACAACAAATTAAGGAAGCTGCTGGTATCTCTGCAAAGAAGCGGTTAGAGTTAGTGGGTGACATTGCAGAGGAAGTGGAAGAAGATAAGGTTGTACAGGTTCCGGTGGAAGAACCAGCTGCTACAGTAGTTCATGAGAAGGCTGTGAGGTCGGTTGAAGTTACACAGCAGAAACAGCCACATAAGTCCAGTAAGGGTTTGAAAAAGAGGAAAAGCCAAGTAGATAGTCCTGAAGAGGAGTATATTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.25

Weight (kDa)

9.0

Isoelectric Point (pI)

61.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405551
rosa_laevigata	RLG00000000512 RLG00000006283 RLG00000008110 RLG00000008280 RLG00000013435 RLG00000014038 RLG00000019487 RLG00000019783 RLG00000020425 RLG00000022555 RLG00000022693 RLG00000023047 RLG00000027683 RLG00000028941 RLG00000029255 RLG00000033981 RLG00000034375 RLG00000035055 RLG00000036983
rosa_multiflora	Rmu_sc0002070.1_g000038 Rmu_sc0002521.1_g000050 Rmu_sc0002986.1_g000060 Rmu_sc0003002.1_g000067 Rmu_sc0006244.1_g000030 Rmu_sc0009710.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002410 Rroxscaffold_1G00026380 Rroxscaffold_1G00026390 Rroxscaffold_1G00063340 Rroxscaffold_2G00089150 Rroxscaffold_2G00114500 Rroxscaffold_2G00155770 Rroxscaffold_3G00224480 Rroxscaffold_3G00243690 Rroxscaffold_3G00251260 Rroxscaffold_4G00298200 Rroxscaffold_4G00327440 Rroxscaffold_7G00192530
rosa_rugosa	Rorug01G0052300 Rorug01G0094500 Rorug03G0152700 Rorug03G0245200 Rorug03G0338800 Rorug03G0338900 Rorug04G0045100 Rorug04G0168400 Rorug04G0291600 Rorug07G0163300 Rorug07G0349700
rosa_samantha	Rh1AG146400 Rh1BG098400 Rh2CG327400 Rh3BG286300 Rh3BG323300 Rh4AG085300 Rh4AG137800 Rh4CG008600 Rh4CG032900 Rh4CG092500 Rh4CG180400 Rh4CG231200 Rh4CG274400 Rh4CG304800 Rh5AG384900 Rh5BG344700 Rh5CG355300 Rh6AG151000 Rh6BG302500 Rh6DG135900 Rh6DG138700 Rh6DG206300 Rh6DG319500 Rh7BG412300 Rh7CG476300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	3 cut(s)	215, 235, 261
AgsI	TTSAA	4 cut(s)	12, 61, 434, 478
AluBI	AGCT	2 cut(s)	296, 395
AluI	AGCT	2 cut(s)	296, 395
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	3 cut(s)	23, 296, 395
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	10, 283, 382
BccI	CCATC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	3 cut(s)	24, 297, 396
BlsI	GCNGC	3 cut(s)	25, 298, 397
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	6, 378
BsaJI	CCNNGG	1 cut(s)	229
BsaWI	WCCGGW	2 cut(s)	211, 379
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 235, 261
Bse1I	ACTGG	1 cut(s)	465
Bse3DI	GCAATG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	215, 235, 261
BseMI	GCAATG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	465
BseRI	GAGGAG	2 cut(s)	122, 527
BseXI	GCAGC	3 cut(s)	10, 283, 382
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	212, 380
BslFI	GGGAC	2 cut(s)	190, 252
BslI	CCNNNNNNNGG	3 cut(s)	215, 235, 261
BsmFI	GGGAC	2 cut(s)	190, 252
BsnI	GGCC	1 cut(s)	219
Bsp1407I	TGTACA	1 cut(s)	370
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	6, 378
BsrDI	GCAATG	1 cut(s)	339
BsrGI	TGTACA	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	465
BssECI	CCNNGG	1 cut(s)	229
BssSI	CACGAG	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	229
Bst2BI	CACGAG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	504
BstAUI	TGTACA	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	102
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 80, 146, 451
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	3 cut(s)	10, 283, 382
BsuRI	GGCC	1 cut(s)	219
CciI	TCATGA	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	1 cut(s)	410
CviJI	RGCY	9 cut(s)	5, 23, 149, 219, 296, 395, 419, 454, 492
CviKI_1	RGCY	9 cut(s)	5, 23, 149, 219, 296, 395, 419, 454, 492
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	528
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	1 cut(s)	413
FaiI	YATR	5 cut(s)	142, 158, 411, 459, 519
FaqI	GGGAC	2 cut(s)	190, 252
FatI	CATG	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	24, 297, 396
Fsp4HI	GCNGC	3 cut(s)	24, 297, 396
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	3 cut(s)	24, 297, 396
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	2 cut(s)	212, 380
Hin1II	CATG	1 cut(s)	413
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	2 cut(s)	212, 380
HphI	GGTGA	1 cut(s)	347
Hpy188III	TCNNGA	3 cut(s)	237, 410, 506
HpyAV	CCTTC	4 cut(s)	18, 203, 217, 409
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	5 cut(s)	56, 83, 275, 311, 344
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 80, 146, 451
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	413
LmnI	GCTCC	2 cut(s)	10, 257
LpnPI	CCDG	9 cut(s)	99, 225, 233, 285, 359, 393, 405, 478, 519
Lsp1109I	GCAGC	3 cut(s)	10, 283, 382
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	3 cut(s)	64, 335, 436
MboII	GAAGA	4 cut(s)	368, 371, 398, 521
MluCI	AATT	3 cut(s)	120, 256, 285
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	9 cut(s)	69, 100, 103, 156, 219, 340, 417, 477, 505
Mph1103I	ATGCAT	1 cut(s)	58
MseI	TTAA	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	2 cut(s)	212, 380
MwoI	GCNNNNNNNGC	4 cut(s)	32, 80, 146, 451
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	2 cut(s)	6, 378
NmuCI	GTSAC	2 cut(s)	64, 335
NsiI	ATGCAT	1 cut(s)	58
PagI	TCATGA	1 cut(s)	409
PkrI	GCNGC	3 cut(s)	25, 298, 397
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	6, 378
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	3 cut(s)	24, 297, 396
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	212
SetI	ASST	9 cut(s)	80, 167, 231, 247, 298, 369, 378, 397, 428
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	226
Sse9I	AATT	3 cut(s)	120, 256, 285
SsiI	CCGC	1 cut(s)	319
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	403
TasI	AATT	3 cut(s)	120, 256, 285
TatI	WGTACW	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseFI	GTSAC	2 cut(s)	64, 335
TseI	GCWGC	3 cut(s)	23, 296, 395
Tsp45I	GTSAC	2 cut(s)	64, 335
TspDTI	ATGAA	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XspI	CTAG	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.