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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 103, 160 |
| AcuI | CTGAAG | 1 cut(s) | 369 |
| AfaI | GTAC | 2 cut(s) | 213, 532 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 56, 102 |
| AgsI | TTSAA | 5 cut(s) | 23, 275, 319, 403, 460 |
| AluBI | AGCT | 2 cut(s) | 236, 376 |
| AluI | AGCT | 2 cut(s) | 236, 376 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 239 |
| AoxI | GGCC | 1 cut(s) | 58 |
| ApeKI | GCWGC | 3 cut(s) | 137, 236, 239 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BbvI | GCAGC | 3 cut(s) | 124, 223, 226 |
| BccI | CCATC | 1 cut(s) | 217 |
| BfmI | CTRYAG | 2 cut(s) | 51, 240 |
| BisI | GCNGC | 3 cut(s) | 138, 237, 240 |
| BlsI | GCNGC | 3 cut(s) | 139, 238, 241 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 1 cut(s) | 219 |
| BmsI | GCATC | 2 cut(s) | 124, 492 |
| BsaJI | CCNNGG | 1 cut(s) | 70 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 56, 102 |
| Bse3DI | GCAATG | 1 cut(s) | 180 |
| BseDI | CCNNGG | 1 cut(s) | 70 |
| BseGI | GGATG | 2 cut(s) | 139, 181 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 56, 102 |
| BseMI | GCAATG | 1 cut(s) | 180 |
| BseRI | GAGGAG | 1 cut(s) | 368 |
| BseXI | GCAGC | 3 cut(s) | 124, 223, 226 |
| BsgI | GTGCAG | 1 cut(s) | 378 |
| BshFI | GGCC | 1 cut(s) | 60 |
| BslFI | GGGAC | 2 cut(s) | 31, 440 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 56, 102 |
| BsmFI | GGGAC | 2 cut(s) | 31, 440 |
| BsmI | GAATGC | 1 cut(s) | 342 |
| BsnI | GGCC | 1 cut(s) | 60 |
| Bsp1407I | TGTACA | 2 cut(s) | 211, 530 |
| BspACI | CCGC | 2 cut(s) | 103, 160 |
| BspANI | GGCC | 1 cut(s) | 60 |
| BspHI | TCATGA | 1 cut(s) | 250 |
| BspLI | GGNNCC | 1 cut(s) | 219 |
| BspMAI | CTGCAG | 1 cut(s) | 244 |
| BsrDI | GCAATG | 1 cut(s) | 180 |
| BsrGI | TGTACA | 2 cut(s) | 211, 530 |
| BssECI | CCNNGG | 1 cut(s) | 70 |
| BssT1I | CCWWGG | 1 cut(s) | 70 |
| Bst6I | CTCTTC | 2 cut(s) | 317, 345 |
| BstAUI | TGTACA | 2 cut(s) | 211, 530 |
| BstC8I | GCNNGC | 1 cut(s) | 58 |
| BstDEI | CTNAG | 1 cut(s) | 169 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 54 |
| BstF5I | GGATG | 2 cut(s) | 139, 181 |
| BstSFI | CTRYAG | 2 cut(s) | 51, 240 |
| BstV1I | GCAGC | 3 cut(s) | 124, 223, 226 |
| BsuRI | GGCC | 1 cut(s) | 60 |
| BtsCI | GGATG | 2 cut(s) | 139, 181 |
| Cac8I | GCNNGC | 1 cut(s) | 58 |
| CaiI | CAGNNNCTG | 1 cut(s) | 239 |
| CciI | TCATGA | 1 cut(s) | 250 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| Csp6I | GTAC | 2 cut(s) | 212, 531 |
| CviAII | CATG | 3 cut(s) | 251, 367, 521 |
| CviJI | RGCY | 4 cut(s) | 60, 236, 260, 376 |
| CviKI_1 | RGCY | 4 cut(s) | 60, 236, 260, 376 |
| CviQI | GTAC | 2 cut(s) | 212, 531 |
| DdeI | CTNAG | 1 cut(s) | 169 |
| Eam1104I | CTCTTC | 2 cut(s) | 317, 345 |
| EarI | CTCTTC | 2 cut(s) | 317, 345 |
| Eco130I | CCWWGG | 1 cut(s) | 70 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 1 cut(s) | 369 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 54 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoT14I | CCWWGG | 1 cut(s) | 70 |
| EcoT22I | ATGCAT | 1 cut(s) | 526 |
| ErhI | CCWWGG | 1 cut(s) | 70 |
| FaeI | CATG | 3 cut(s) | 254, 370, 524 |
| FaiI | YATR | 6 cut(s) | 252, 368, 522, 570, 572, 574 |
| FaqI | GGGAC | 2 cut(s) | 31, 440 |
| FatI | CATG | 3 cut(s) | 250, 366, 520 |
| FauI | CCCGC | 1 cut(s) | 96 |
| Fnu4HI | GCNGC | 3 cut(s) | 138, 237, 240 |
| FokI | GGATG | 2 cut(s) | 146, 188 |
| Fsp4HI | GCNGC | 3 cut(s) | 138, 237, 240 |
| GluI | GCNGC | 3 cut(s) | 138, 237, 240 |
| HaeIII | GGCC | 1 cut(s) | 60 |
| Hin1II | CATG | 3 cut(s) | 254, 370, 524 |
| Hpy166II | GTNNAC | 1 cut(s) | 531 |
| Hpy188I | TCNGA | 2 cut(s) | 222, 514 |
| Hpy188III | TCNNGA | 3 cut(s) | 78, 251, 347 |
| Hpy8I | GTNNAC | 1 cut(s) | 531 |
| HpyAV | CCTTC | 6 cut(s) | 17, 44, 58, 181, 250, 466 |
| HpyCH4V | TGCA | 4 cut(s) | 116, 242, 395, 524 |
| HpyF3I | CTNAG | 1 cut(s) | 169 |
| Hsp92II | CATG | 3 cut(s) | 254, 370, 524 |
| LmnI | GCTCC | 1 cut(s) | 98 |
| Lsp1109I | GCAGC | 3 cut(s) | 124, 223, 226 |
| LweI | GCATC | 2 cut(s) | 124, 492 |
| MaeIII | GTNAC | 1 cut(s) | 277 |
| MboII | GAAGA | 7 cut(s) | 23, 209, 212, 239, 331, 334, 362 |
| MluCI | AATT | 2 cut(s) | 430, 460 |
| MnlI | CCTC | 4 cut(s) | 124, 318, 346, 438 |
| Mph1103I | ATGCAT | 1 cut(s) | 526 |
| MseI | TTAA | 1 cut(s) | 507 |
| MspA1I | CMGCKG | 1 cut(s) | 236 |
| Mva1269I | GAATGC | 1 cut(s) | 342 |
| NlaIII | CATG | 3 cut(s) | 254, 370, 524 |
| NlaIV | GGNNCC | 1 cut(s) | 219 |
| NsiI | ATGCAT | 1 cut(s) | 526 |
| PagI | TCATGA | 1 cut(s) | 250 |
| PctI | GAATGC | 1 cut(s) | 342 |
| PkrI | GCNGC | 3 cut(s) | 139, 238, 241 |
| PpuMI | RGGWCCY | 1 cut(s) | 67 |
| Psp5II | RGGWCCY | 1 cut(s) | 67 |
| PspN4I | GGNNCC | 1 cut(s) | 219 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PspPPI | RGGWCCY | 1 cut(s) | 67 |
| PstI | CTGCAG | 1 cut(s) | 244 |
| PstNI | CAGNNNCTG | 1 cut(s) | 239 |
| PvuII | CAGCTG | 1 cut(s) | 236 |
| RsaI | GTAC | 2 cut(s) | 213, 532 |
| RsaNI | GTAC | 2 cut(s) | 212, 531 |
| SaqAI | TTAA | 1 cut(s) | 507 |
| SatI | GCNGC | 3 cut(s) | 138, 237, 240 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SetI | ASST | 9 cut(s) | 8, 72, 88, 210, 219, 238, 378, 400, 553 |
| SfaNI | GCATC | 2 cut(s) | 124, 492 |
| SfcI | CTRYAG | 2 cut(s) | 51, 240 |
| SinI | GGWCC | 1 cut(s) | 67 |
| Sse9I | AATT | 2 cut(s) | 430, 460 |
| SsiI | CCGC | 2 cut(s) | 103, 160 |
| SspI | AATATT | 1 cut(s) | 361 |
| StyI | CCWWGG | 1 cut(s) | 70 |
| TaqI | TCGA | 1 cut(s) | 486 |
| TasI | AATT | 2 cut(s) | 430, 460 |
| TatI | WGTACW | 2 cut(s) | 211, 530 |
| Tru1I | TTAA | 1 cut(s) | 507 |
| Tru9I | TTAA | 1 cut(s) | 507 |
| TseI | GCWGC | 3 cut(s) | 137, 236, 239 |
| TspDTI | ATGAA | 3 cut(s) | 239, 383, 509 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 54 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 68 |
| Zsp2I | ATGCAT | 1 cut(s) | 526 |