Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Forward (+)

8593433 .. 8595291

Gene Structure 1859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0052300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGATGAAAGAGGAGGCGGCGCCACTGGCGAGCCTGGAGGCTTCGGCCGCGGAATCAGAGGCTTCAAGGTCTTTGTCGTCGTCGGCGACAGCAAAAGCCATGTCGGACTCGGCATCAAGTGCAGCAAGGAGGTTGCTACTGCTATTCGTGGAGCCATTATTGTGGCTAAGCTGTGGGTGATTCCTGTGAGGAGGGGTTACAAGATCGGAAAGCCCCACACCATGCATTGCAAGGTCACCGGAAAGTGTGGCTCTGTTATCGTGGGGATGGTGCTTGCTCCTCGTGGTTCTGGTATTATGGTGGCTAGGGTTCCCAAGAAGGTGTTCCAATTTGCTGGTATTGATGATGTGTTCACTTCATCCAAGGGGTCTACCAAGACTCTCGAAACTTTGTCAAGTGAAGGAAAAGCAGAGGGAGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

141

Amino Acids

14.63

Weight (kDa)

9.98

Isoelectric Point (pI)

12.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	19 - 64	8.3e-16	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	81 - 128	3.6e-12	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	371
AccII	CGCG	1 cut(s)	51
AciI	CCGC	3 cut(s)	18, 49, 51
AcoI	YGGCCR	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	34
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	2 cut(s)	172, 419
AluI	AGCT	2 cut(s)	172, 419
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	123
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	190, 229
BanI	GGYRCC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	36
BfaI	CTAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	3 cut(s)	19, 49, 124
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	3 cut(s)	20, 50, 125
Bme1390I	CCNGG	1 cut(s)	36
BmiI	GGNNCC	3 cut(s)	22, 154, 312
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	57
Bpu1102I	GCTNAGC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	49, 363
BsaWI	WCCGGW	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	49, 363
BseGI	GGATG	3 cut(s)	10, 273, 359
BseMI	GCAATG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	3 cut(s)	27, 205, 270
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	51
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	240
BsnI	GGCC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	204
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	3 cut(s)	18, 49, 51
BspANI	GGCC	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	22, 154, 312
BspT107I	GGYRCC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	49, 363
BssMI	GATC	1 cut(s)	204
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstC8I	GCNNGC	3 cut(s)	32, 276, 421
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	49
BstEII	GGTNACC	1 cut(s)	235
BstF5I	GGATG	3 cut(s)	10, 273, 359
BstFNI	CGCG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 48, 120, 416
BstNI	CCWGG	1 cut(s)	36
BstPI	GGTNACC	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	34
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	135
BstXI	CCANNNNNNTGG	2 cut(s)	163, 335
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	3 cut(s)	10, 273, 359
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	3 cut(s)	32, 276, 421
CfoI	GCGC	1 cut(s)	23
Cfr42I	CCGCGG	1 cut(s)	52
CviAII	CATG	2 cut(s)	101, 223
DdeI	CTNAG	1 cut(s)	168
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	363
Eco52I	CGGCCG	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	2 cut(s)	104, 226
FaiI	YATR	3 cut(s)	102, 224, 299
FatI	CATG	2 cut(s)	100, 222
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	3 cut(s)	19, 49, 124
FokI	GGATG	3 cut(s)	17, 280, 346
Fsp4HI	GCNGC	3 cut(s)	19, 49, 124
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	3 cut(s)	19, 49, 124
GsuI	CTGGAG	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	240
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	104, 226
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	4 cut(s)	54, 108, 181, 379
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	2 cut(s)	190, 229
Hpy166II	GTNNAC	2 cut(s)	354, 372
Hpy188I	TCNGA	3 cut(s)	59, 107, 209
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	2 cut(s)	354, 372
Hpy99I	CGWCG	2 cut(s)	83, 86
HpyAV	CCTTC	2 cut(s)	313, 395
HpyCH4V	TGCA	3 cut(s)	123, 226, 231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 48, 120, 416
HpyF3I	CTNAG	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	104, 226
HspAI	GCGC	1 cut(s)	21
KasI	GGCGCC	1 cut(s)	20
KspI	CCGCGG	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	3 cut(s)	152, 283, 416
LpnPI	CCDG	7 cut(s)	12, 21, 48, 198, 253, 276, 321
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	197, 235
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MluCI	AATT	1 cut(s)	329
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	2 cut(s)	102, 373
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	9 cut(s)	5, 8, 32, 53, 124, 183, 186, 291, 406
Mph1103I	ATGCAT	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	4 cut(s)	27, 48, 120, 416
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	2 cut(s)	104, 226
NlaIV	GGNNCC	3 cut(s)	22, 154, 312
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	54, 181
PkrI	GCNGC	3 cut(s)	20, 50, 125
PleI	GAGTC	2 cut(s)	102, 373
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	2 cut(s)	102, 373
Psp6I	CCWGG	1 cut(s)	34
PspEI	GGTNACC	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	3 cut(s)	22, 154, 312
RseI	CAYNNNNRTG	1 cut(s)	161
SacII	CCGCGG	1 cut(s)	52
SatI	GCNGC	3 cut(s)	19, 49, 124
Sau3AI	GATC	1 cut(s)	204
SchI	GAGTC	2 cut(s)	102, 373
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	6 cut(s)	72, 135, 174, 237, 324, 421
SfaNI	GCATC	1 cut(s)	123
SfoI	GGCGCC	1 cut(s)	22
Sfr303I	CCGCGG	1 cut(s)	52
SgrBI	CCGCGG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	329
SsiI	CCGC	3 cut(s)	18, 49, 51
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	363
TaqI	TCGA	1 cut(s)	384
TasI	AATT	1 cut(s)	329
TauI	GCSGC	2 cut(s)	21, 51
TfiI	GAWTC	2 cut(s)	54, 181
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	21, 348
TspRI	CASTG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.