Rh4AG326300

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
63773443 .. 63774751
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG326300.1

Sequence Viewer

Length: 705 bp
ATGGCGTCTACCGGAAACAAAATGCATGATCTTTTGTCTTATTTGATTGCTACGGCAGACCCGGTTACCGGAAGGTTCATGCCGGAGAATGAAATTGCTAATAAAATTATGGGGACTGTGGCCGCTTCGTTCAACTCTCCAGCTATGACTACTACTTTTATCGAGAAGTTACTGGGCGAAAGACCTGATATTTATGACAAAGTTCGAATTGAACAACTGGAGATTTTGAAGTCCAAAAAATCTGGCGAGGCACTCAATTGGGATGATATGCAAAAAATGAAGTATTCGTGGAACGTAGCCCTGGAGGCGATGAGGCTCATACCACCTCTTCAGGGAACATTTAGAGAGGCTGCAAGAGACTTCACTCACCAAGGTTTTACAATTCCTAAAGGATGGAAGGTTTATTGGACAGTGAGCACCACAAACATGAACCCTGAATATTTTCCAGCGCCAGAAGAGTTTGATCCTACAAGGTTCGGGAAAGCAACTCCTCCGCCTTACACAAACATCCCATTTGGGAGCGGTCCTCGAATCTGCCCCGGAAAGGACTACGCTCGTCTGCAAATTCTTAGTTTTATGCACCATCTTGTTATAAGATTCAAATGGGAACTTGTGAATCCTAATTGCAAGATCTCAGGTGGTATGAATCCCTTTCCAGTTGATGGGCTGAAGGTTCGCCTCCAAGCTCAACCCATTCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

234

Amino Acids

26.49

Weight (kDa)

8.98

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 6 - 206 5e-42 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 593
AccB7I CCANNNNNTGG 1 cut(s) 662
AccBSI CCGCTC 1 cut(s) 522
AccI GTMKAC 1 cut(s) 8
AciI CCGC 3 cut(s) 123, 494, 522
AclWI GGATC 1 cut(s) 458
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 564
AcuI CTGAAG 2 cut(s) 314, 689
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 4 cut(s) 68, 332, 544, 662
AgsI TTSAA 5 cut(s) 133, 212, 229, 601, 698
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 3 cut(s) 143, 686, 701
AluI AGCT 3 cut(s) 143, 686, 701
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 1 cut(s) 458
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 564
Asp700I GAANNNNTTC 1 cut(s) 441
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 524
AsuC2I CCSGG 2 cut(s) 62, 540
AsuHPI GGTGA 1 cut(s) 359
AsuII TTCGAA 1 cut(s) 205
AvaII GGWCC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 1 cut(s) 337
BccI CCATC 3 cut(s) 387, 591, 656
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 302
BcnI CCSGG 2 cut(s) 62, 540
BcoDI GTCTC 1 cut(s) 351
BfoI RGCGCY 1 cut(s) 452
BglI GCCNNNNNGGC 1 cut(s) 305
BglII AGATCT 1 cut(s) 630
BisI GCNGC 2 cut(s) 123, 351
BlsI GCNGC 2 cut(s) 124, 352
Bme1390I CCNGG 3 cut(s) 62, 302, 540
Bme18I GGWCC 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 524
BmrFI CCNGG 3 cut(s) 62, 302, 540
BmrI ACTGGG 1 cut(s) 182
BmuI ACTGGG 1 cut(s) 182
BplI GAGNNNNNCTC 2 cut(s) 511, 543
BpmI CTGGAG 3 cut(s) 123, 239, 323
Bpu14I TTCGAA 1 cut(s) 205
BpuMI CCSGG 2 cut(s) 62, 540
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 300, 370, 538
BsaWI WCCGGW 2 cut(s) 11, 68
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 332, 544, 662
Bse1I ACTGG 3 cut(s) 177, 222, 656
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 300, 370, 538
BseGI GGATG 3 cut(s) 268, 398, 507
BseLI CCNNNNNNNGG 4 cut(s) 68, 332, 544, 662
BseMII CTCAG 1 cut(s) 648
BseNI ACTGG 3 cut(s) 177, 222, 656
BseRI GAGGAG 1 cut(s) 480
BseXI GCAGC 1 cut(s) 337
BshFI GGCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 419
BsiSI CCGG 5 cut(s) 12, 62, 69, 83, 540
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 4 cut(s) 68, 332, 544, 662
BsmAI GTCTC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 1 cut(s) 122
Bsp119I TTCGAA 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 3 cut(s) 28, 463, 630
BspACI CCGC 3 cut(s) 123, 494, 522
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 647
BspPI GGATC 1 cut(s) 458
BspT104I TTCGAA 1 cut(s) 205
BsrBI CCGCTC 1 cut(s) 522
BsrI ACTGG 3 cut(s) 177, 222, 656
BssECI CCNNGG 3 cut(s) 300, 370, 538
BssMI GATC 3 cut(s) 28, 463, 630
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 2 cut(s) 118, 412
Bst6I CTCTTC 2 cut(s) 333, 450
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 569, 634
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 3 cut(s) 268, 398, 507
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 3 cut(s) 31, 466, 633
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 3 cut(s) 28, 463, 630
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 302
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 3 cut(s) 60, 300, 538
BstV1I GCAGC 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 630
BstYI RGATCY 1 cut(s) 630
BsuRI GGCC 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 3 cut(s) 268, 398, 507
BtsIMutI CAGTG 1 cut(s) 417
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 524
CviAII CATG 3 cut(s) 26, 79, 427
CviJI RGCY 8 cut(s) 122, 143, 299, 316, 350, 667, 686, 701
CviKI_1 RGCY 8 cut(s) 122, 143, 299, 316, 350, 667, 686, 701
DdeI CTNAG 2 cut(s) 569, 634
DpnI GATC 3 cut(s) 30, 465, 632
DpnII GATC 3 cut(s) 28, 463, 630
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 333, 450
EarI CTCTTC 2 cut(s) 333, 450
EciI GGCGGA 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 524
Eco57I CTGAAG 2 cut(s) 314, 689
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 370
EcoT22I ATGCAT 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 3 cut(s) 29, 82, 430
FaqI GGGAC 1 cut(s) 127
FatI CATG 3 cut(s) 25, 78, 426
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 123, 351
FokI GGATG 3 cut(s) 275, 405, 494
Fsp4HI GCNGC 2 cut(s) 123, 351
GlaI GCGC 1 cut(s) 450
GluI GCNGC 2 cut(s) 123, 351
GsuI CTGGAG 3 cut(s) 123, 239, 323
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 1 cut(s) 122
HapII CCGG 5 cut(s) 12, 62, 69, 83, 540
HhaI GCGC 1 cut(s) 451
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 29, 82, 430
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 4 cut(s) 531, 597, 616, 646
HpaII CCGG 5 cut(s) 12, 62, 69, 83, 540
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 163, 478
Hpy8I GTNNAC 1 cut(s) 9
HpyAV CCTTC 3 cut(s) 66, 391, 664
HpyCH4III ACNGT 2 cut(s) 118, 412
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 6 cut(s) 25, 271, 353, 562, 580, 627
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 569, 634
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 29, 82, 430
HspAI GCGC 1 cut(s) 449
Kzo9I GATC 3 cut(s) 28, 463, 630
LmnI GCTCC 1 cut(s) 519
Lsp1109I GCAGC 1 cut(s) 337
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 2 cut(s) 64, 168
MalI GATC 3 cut(s) 30, 465, 632
MbiI CCGCTC 1 cut(s) 522
MboI GATC 3 cut(s) 28, 463, 630
MboII GAAGA 2 cut(s) 320, 467
MfeI CAATTG 1 cut(s) 256
MflI RGATCY 1 cut(s) 630
MhlI GDGCHC 1 cut(s) 419
MluCI AATT 7 cut(s) 93, 105, 207, 256, 381, 564, 622
MnlI CCTC 8 cut(s) 241, 298, 306, 336, 340, 501, 537, 689
Mph1103I ATGCAT 1 cut(s) 27
MroXI GAANNNNTTC 1 cut(s) 441
MseI TTAA 1 cut(s) 703
MslI CAYNNNNRTG 1 cut(s) 425
MspI CCGG 5 cut(s) 12, 62, 69, 83, 540
MspR9I CCNGG 3 cut(s) 62, 302, 540
MunI CAATTG 1 cut(s) 256
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 305
NciI CCSGG 2 cut(s) 62, 540
NdeII GATC 3 cut(s) 28, 463, 630
NlaIII CATG 3 cut(s) 29, 82, 430
NsiI ATGCAT 1 cut(s) 27
NspV TTCGAA 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 4 cut(s) 531, 597, 616, 646
PflMI CCANNNNNTGG 1 cut(s) 662
PkrI GCNGC 2 cut(s) 124, 352
PsiI TTATAA 1 cut(s) 593
Psp6I CCWGG 1 cut(s) 300
PspEI GGTNACC 1 cut(s) 64
PspGI CCWGG 1 cut(s) 300
PspPI GGNCC 1 cut(s) 524
PsuI RGATCY 1 cut(s) 630
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 1 cut(s) 703
SatI GCNGC 2 cut(s) 123, 351
Sau3AI GATC 3 cut(s) 28, 463, 630
Sau96I GGNCC 1 cut(s) 524
ScrFI CCNGG 3 cut(s) 62, 302, 540
SduI GDGCHC 1 cut(s) 419
SfuI TTCGAA 1 cut(s) 205
SinI GGWCC 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 425
Sse9I AATT 7 cut(s) 93, 105, 207, 256, 381, 564, 622
SsiI CCGC 3 cut(s) 123, 494, 522
SspI AATATT 1 cut(s) 440
StyD4I CCNGG 3 cut(s) 60, 300, 538
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 2 cut(s) 118, 412
TaiI ACGT 1 cut(s) 297
TaqI TCGA 3 cut(s) 162, 205, 529
TasI AATT 7 cut(s) 93, 105, 207, 256, 381, 564, 622
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 4 cut(s) 531, 597, 616, 646
Tru1I TTAA 1 cut(s) 703
Tru9I TTAA 1 cut(s) 703
TscAI CASTG 1 cut(s) 417
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 5 cut(s) 67, 105, 293, 443, 659
TspRI CASTG 1 cut(s) 417
Van91I CCANNNNNTGG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 524
XapI RAATTY 1 cut(s) 564
XmiI GTMKAC 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 441
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.