Rh1BG055300

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000192
Physical Location & Seq
Reverse (-)
8089192 .. 8089716
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG055300.1

Sequence Viewer

Length: 525 bp
ATGCGCGCAGTCATATCAACATTTCTCAAGCCTAACGCTGTCCGAAAGCATATAGGCGACGTGGATCAGGTCACCAAAAACCATTTCGATACACATTGGTCCTCGCTGGATCAAAAACAAGTGGTCAAATTTCACTCAGTAGCAATGAAGTATACCTTAGCATTATCTTGCAGACTCCTCTTAAACATCGAGGATCCACAAGTGATTGCCAAGCTAGAGAAACCCATTCGGTATATAAATGTGGGGATCGTTTCATTGCCAGTAGATTTGCCGGGCACCAACTTCAATAGAGCCATCAGAGCATCCAAGAAAATGAAGAAGGAAATTGAGAGTATGGTTGTGAAGAGGAAGTTAGATCTCATGAATCTGAATTTGATTGAACGTGAACAATTAGCGAATGCACCACAAGATCTAATGTCTAGCTGGCTCATGGAGAGATATAGCGATGGAAAAGAGATGACGGAAGCGGACATTGCCGAAAAGTTGTGTGGTATAATACTAGTCGGTTATGACCCCAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

174

Amino Acids

19.85

Weight (kDa)

9.04

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 275
AccI GTMKAC 1 cut(s) 152
AccII CGCG 1 cut(s) 6
AciI CCGC 1 cut(s) 467
AclWI GGATC 5 cut(s) 72, 117, 188, 201, 254
AcsI RAATTY 2 cut(s) 128, 370
AgsI TTSAA 2 cut(s) 286, 380
AhlI ACTAGT 1 cut(s) 499
AjiI CACGTC 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 2 cut(s) 214, 423
AluI AGCT 2 cut(s) 214, 423
AlwI GGATC 5 cut(s) 72, 117, 188, 201, 254
ApoI RAATTY 2 cut(s) 128, 370
AspLEI GCGC 2 cut(s) 6, 8
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 278
BamHI GGATCC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 275
BccI CCATC 2 cut(s) 302, 440
BcnI CCSGG 1 cut(s) 273
BcuI ACTAGT 1 cut(s) 499
BfaI CTAG 3 cut(s) 215, 420, 500
BglII AGATCT 2 cut(s) 355, 409
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 2 cut(s) 195, 277
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 260
Bse3DI GCAATG 3 cut(s) 150, 254, 471
BseGI GGATG 1 cut(s) 302
BseMI GCAATG 3 cut(s) 150, 254, 471
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 260
BsePI GCGCGC 1 cut(s) 4
BseRI GAGGAG 1 cut(s) 167
BseSI GKGCMC 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 6
BshNI GGYRCC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 272
BsmI GAATGC 1 cut(s) 403
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 6 cut(s) 64, 109, 193, 246, 355, 409
BspACI CCGC 1 cut(s) 467
BspCNI CTCAG 1 cut(s) 149
BspFNI CGCG 1 cut(s) 6
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 2 cut(s) 195, 277
BspPI GGATC 5 cut(s) 72, 117, 188, 201, 254
BspT107I GGYRCC 1 cut(s) 275
BsrDI GCAATG 3 cut(s) 150, 254, 471
BsrI ACTGG 1 cut(s) 260
BssHII GCGCGC 1 cut(s) 4
BssMI GATC 6 cut(s) 64, 109, 193, 246, 355, 409
BssNAI GTATAC 1 cut(s) 153
Bst1107I GTATAC 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 338
BstC8I GCNNGC 2 cut(s) 6, 425
BstDEI CTNAG 2 cut(s) 136, 157
BstEII GGTNACC 1 cut(s) 70
BstF5I GGATG 1 cut(s) 302
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 2 cut(s) 6, 8
BstKTI GATC 6 cut(s) 67, 112, 196, 249, 358, 412
BstMBI GATC 6 cut(s) 64, 109, 193, 246, 355, 409
BstMWI GCNNNNNNNGC 2 cut(s) 299, 473
BstPI GGTNACC 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 278
BstUI CGCG 1 cut(s) 6
BstX2I RGATCY 3 cut(s) 193, 355, 409
BstYI RGATCY 3 cut(s) 193, 355, 409
BstZ17I GTATAC 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 459
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 302
Cac8I GCNNGC 2 cut(s) 6, 425
CciI TCATGA 1 cut(s) 360
CfoI GCGC 2 cut(s) 6, 8
Cfr13I GGNCC 1 cut(s) 99
CviAII CATG 2 cut(s) 361, 430
CviJI RGCY 5 cut(s) 31, 214, 293, 423, 427
CviKI_1 RGCY 5 cut(s) 31, 214, 293, 423, 427
DdeI CTNAG 2 cut(s) 136, 157
DpnI GATC 6 cut(s) 66, 111, 195, 248, 357, 411
DpnII GATC 6 cut(s) 64, 109, 193, 246, 355, 409
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 99
Eco91I GGTNACC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 70
FaeI CATG 2 cut(s) 364, 433
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 2 cut(s) 360, 429
FblI GTMKAC 1 cut(s) 152
FokI GGATG 1 cut(s) 289
FspBI CTAG 3 cut(s) 215, 420, 500
GlaI GCGC 2 cut(s) 5, 7
HapII CCGG 1 cut(s) 272
HhaI GCGC 2 cut(s) 6, 8
Hin1II CATG 2 cut(s) 364, 433
Hin6I GCGC 2 cut(s) 4, 6
HinP1I GCGC 2 cut(s) 4, 6
HinfI GANTC 2 cut(s) 174, 364
HpaII CCGG 1 cut(s) 272
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 153, 386
Hpy188I TCNGA 3 cut(s) 44, 299, 369
Hpy188III TCNNGA 1 cut(s) 361
Hpy8I GTNNAC 2 cut(s) 153, 386
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 313
HpyCH4IV ACGT 2 cut(s) 60, 382
HpyCH4V TGCA 2 cut(s) 171, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 473
HpyF3I CTNAG 2 cut(s) 136, 157
HpySE526I ACGT 2 cut(s) 60, 382
Hsp92II CATG 2 cut(s) 364, 433
HspAI GCGC 2 cut(s) 4, 6
Kzo9I GATC 6 cut(s) 64, 109, 193, 246, 355, 409
LpnPI CCDG 5 cut(s) 53, 92, 273, 285, 409
LweI GCATC 1 cut(s) 311
MaeI CTAG 3 cut(s) 215, 420, 500
MaeII ACGT 2 cut(s) 60, 382
MaeIII GTNAC 1 cut(s) 70
MalI GATC 6 cut(s) 66, 111, 195, 248, 357, 411
MboI GATC 6 cut(s) 64, 109, 193, 246, 355, 409
MboII GAAGA 2 cut(s) 328, 355
MflI RGATCY 3 cut(s) 193, 355, 409
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 5 cut(s) 128, 324, 370, 389, 520
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 4 cut(s) 112, 184, 188, 339
MseI TTAA 2 cut(s) 182, 523
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 273
Mva1269I GAATGC 1 cut(s) 403
MvnI CGCG 1 cut(s) 6
MwoI GCNNNNNNNGC 2 cut(s) 299, 473
NciI CCSGG 1 cut(s) 273
NdeII GATC 6 cut(s) 64, 109, 193, 246, 355, 409
NlaIII CATG 2 cut(s) 364, 433
NlaIV GGNNCC 2 cut(s) 195, 277
NmuCI GTSAC 1 cut(s) 70
PagI TCATGA 1 cut(s) 360
PauI GCGCGC 1 cut(s) 4
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 1 cut(s) 364
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 195, 277
PspPI GGNCC 1 cut(s) 99
PsuI RGATCY 3 cut(s) 193, 355, 409
PteI GCGCGC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 182, 523
Sau3AI GATC 6 cut(s) 64, 109, 193, 246, 355, 409
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 278
SetI ASST 6 cut(s) 63, 72, 158, 216, 385, 425
SfaNI GCATC 1 cut(s) 311
SinI GGWCC 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SpeI ACTAGT 1 cut(s) 499
Sse9I AATT 5 cut(s) 128, 324, 370, 389, 520
SsiI CCGC 1 cut(s) 467
SspMI CTAG 3 cut(s) 215, 420, 500
StyD4I CCNGG 1 cut(s) 271
TaiI ACGT 2 cut(s) 63, 385
TaqI TCGA 2 cut(s) 87, 189
TasI AATT 5 cut(s) 128, 324, 370, 389, 520
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 2 cut(s) 182, 523
Tru9I TTAA 2 cut(s) 182, 523
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 4 cut(s) 161, 243, 329, 377
TspGWI ACGGA 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 2 cut(s) 128, 370
XmiI GTMKAC 1 cut(s) 152
XspI CTAG 3 cut(s) 215, 420, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.