Rmu_sc0008633.1_g000002

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008633.1
OG0000192
Physical Location & Seq
Reverse (-)
12402 .. 14353
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008633.1_g000002.1.cds

Sequence Viewer

Length: 849 bp
atggggttgatatcgtcagtgtcggggcgagaggcaaagatgatggtggtggtgggcaactcctcgaaaatcctcagggctggaacaatgagtgccggaataggtgattgtgcttggttgtattggaactcgattgtgtacgagagaagcatggggttgatatcgtcagtgtcggggcgagagacaaagatgatggtggtggtgggcaattcctcgaaaatcctcagggctggaacaatgagtgccggaatgataacagctacaatggtgaggccgcagaggttcgggatcgccgatcaatcgaacggcgacgagaacgttggagtggctggagctccgactggagcttcttcgtcgtcttcaggtttggactgcatctccggtgcggcgatcggagagacagaccggaggggggacatacaaaagatgaaatatacatggaacgtggtatgtgaagtattgcgattgcagcccccagctagtggaacttttagggaggccatcaccgacttcgtctatgagggatatctaataccaaaaggaatgaagttacattggaatgcgtttgccacgcataagaacccggaatactttccagatccgcacaagtttgacccgtcaaggtttgaaggacaaggaccacctcctttctcatatgttccttttggaggaggacctcgaatgtgtcccggaaaagaaaatgctcgattccagatattggttttcatgtataacctggtcaccagattcaagtgggagatggtttttcctgacgagaagatggtcgtcgaccctgttccttttcctacccgaggacttcctattcatctgttttctcatgaatcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

282

Amino Acids

30.88

Weight (kDa)

8.84

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 482, 718
AccI GTMKAC 1 cut(s) 789
AciI CCGC 3 cut(s) 275, 386, 602
AclI AACGTT 1 cut(s) 318
AclWI GGATC 2 cut(s) 296, 593
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 5 cut(s) 412, 482, 668, 718, 812
AgsI TTSAA 2 cut(s) 629, 751
AjnI CCWGG 1 cut(s) 735
AluBI AGCT 4 cut(s) 260, 335, 347, 479
AluI AGCT 4 cut(s) 260, 335, 347, 479
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 2 cut(s) 176, 392
AlwI GGATC 2 cut(s) 296, 593
Ama87I CYCGRG 1 cut(s) 810
AoxI GGCC 2 cut(s) 272, 498
ApeKI GCWGC 1 cut(s) 469
Asp700I GAANNNNTTC 1 cut(s) 591
AspS9I GGNCC 2 cut(s) 638, 674
AsuC2I CCSGG 2 cut(s) 584, 690
AsuHPI GGTGA 4 cut(s) 116, 280, 496, 733
AvaI CYCGRG 1 cut(s) 810
AvaII GGWCC 2 cut(s) 638, 674
AxyI CCTNAGG 2 cut(s) 74, 224
BanII GRGCYC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 481
BccI CCATC 5 cut(s) 37, 187, 509, 754, 775
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 737
BcnI CCSGG 2 cut(s) 584, 690
BcoDI GTCTC 2 cut(s) 176, 392
BfaI CTAG 1 cut(s) 480
BisI GCNGC 3 cut(s) 275, 387, 470
BlsI GCNGC 3 cut(s) 276, 388, 471
Bme1390I CCNGG 3 cut(s) 584, 690, 737
Bme18I GGWCC 2 cut(s) 638, 674
BmeT110I CYCGRG 1 cut(s) 810
BmgT120I GGNCC 2 cut(s) 638, 674
BmrFI CCNGG 3 cut(s) 584, 690, 737
BmsI GCATC 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 2 cut(s) 351, 363
BpuMI CCSGG 2 cut(s) 584, 690
BsaJI CCNNGG 1 cut(s) 811
BsaWI WCCGGW 2 cut(s) 380, 405
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 5 cut(s) 412, 482, 668, 718, 812
Bse1I ACTGG 1 cut(s) 346
Bse21I CCTNAGG 2 cut(s) 74, 224
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 1 cut(s) 811
BseLI CCNNNNNNNGG 5 cut(s) 412, 482, 668, 718, 812
BseMII CTCAG 2 cut(s) 88, 238
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 2 cut(s) 52, 684
BseXI GCAGC 1 cut(s) 481
BseYI CCCAGC 1 cut(s) 475
Bsh1285I CGRYCG 1 cut(s) 393
BshFI GGCC 2 cut(s) 274, 500
BsiEI CGRYCG 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 337
BsiHKCI CYCGRG 1 cut(s) 810
BsiSI CCGG 6 cut(s) 96, 246, 381, 406, 584, 690
BslFI GGGAC 2 cut(s) 428, 672
BslI CCNNNNNNNGG 5 cut(s) 412, 482, 668, 718, 812
BsmAI GTCTC 2 cut(s) 176, 392
BsmFI GGGAC 2 cut(s) 428, 672
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 2 cut(s) 274, 500
BsoBI CYCGRG 1 cut(s) 810
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 4 cut(s) 288, 295, 390, 598
BspACI CCGC 3 cut(s) 275, 386, 602
BspANI GGCC 2 cut(s) 274, 500
BspCNI CTCAG 2 cut(s) 87, 237
BspHI TCATGA 1 cut(s) 838
BspPI GGATC 2 cut(s) 296, 593
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 811
BssMI GATC 4 cut(s) 288, 295, 390, 598
Bst2UI CCWGG 1 cut(s) 737
BstDEI CTNAG 2 cut(s) 74, 224
BstEII GGTNACC 1 cut(s) 739
BstENI CCTNNNNNAGG 2 cut(s) 666, 810
BstKTI GATC 4 cut(s) 291, 298, 393, 601
BstMAI GTCTC 2 cut(s) 176, 392
BstMBI GATC 4 cut(s) 288, 295, 390, 598
BstMCI CGRYCG 1 cut(s) 393
BstMWI GCNNNNNNNGC 1 cut(s) 469
BstNI CCWGG 1 cut(s) 737
BstPI GGTNACC 1 cut(s) 739
BstSCI CCNGG 3 cut(s) 582, 688, 735
BstV1I GCAGC 1 cut(s) 481
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
Bsu36I CCTNAGG 2 cut(s) 74, 224
BsuRI GGCC 2 cut(s) 274, 500
BtsIMutI CAGTG 2 cut(s) 24, 174
CciI TCATGA 1 cut(s) 838
Cfr13I GGNCC 2 cut(s) 638, 674
CsiI ACCWGGT 1 cut(s) 735
Csp6I GTAC 1 cut(s) 139
CviAII CATG 4 cut(s) 151, 438, 727, 839
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 2 cut(s) 74, 224
DpnI GATC 4 cut(s) 290, 297, 392, 600
DpnII GATC 4 cut(s) 288, 295, 390, 598
Ecl136II GAGCTC 1 cut(s) 335
Eco24I GRGCYC 1 cut(s) 337
Eco32I GATATC 3 cut(s) 12, 162, 527
Eco47I GGWCC 2 cut(s) 638, 674
Eco53kI GAGCTC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 345
Eco81I CCTNAGG 2 cut(s) 74, 224
Eco88I CYCGRG 1 cut(s) 810
Eco91I GGTNACC 1 cut(s) 739
EcoICRI GAGCTC 1 cut(s) 335
EcoNI CCTNNNNNAGG 2 cut(s) 666, 810
EcoO109I RGGNCCY 1 cut(s) 674
EcoO65I GGTNACC 1 cut(s) 739
EcoRII CCWGG 1 cut(s) 735
EcoRV GATATC 3 cut(s) 12, 162, 527
EcoT38I GRGCYC 1 cut(s) 337
FaeI CATG 4 cut(s) 154, 441, 730, 842
FaqI GGGAC 2 cut(s) 428, 672
FatI CATG 4 cut(s) 150, 437, 726, 838
FauNDI CATATG 1 cut(s) 655
FblI GTMKAC 1 cut(s) 789
Fnu4HI GCNGC 3 cut(s) 275, 387, 470
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 3 cut(s) 275, 387, 470
FspBI CTAG 1 cut(s) 480
GluI GCNGC 3 cut(s) 275, 387, 470
GsaI CCCAGC 1 cut(s) 479
GsuI CTGGAG 2 cut(s) 351, 363
HaeIII GGCC 2 cut(s) 274, 500
HapII CCGG 6 cut(s) 96, 246, 381, 406, 584, 690
Hin1II CATG 4 cut(s) 154, 441, 730, 842
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HinfI GANTC 3 cut(s) 708, 747, 842
HpaII CCGG 6 cut(s) 96, 246, 381, 406, 584, 690
HphI GGTGA 4 cut(s) 116, 280, 496, 733
Hpy166II GTNNAC 2 cut(s) 139, 790
Hpy188I TCNGA 2 cut(s) 339, 395
Hpy188III TCNNGA 5 cut(s) 286, 596, 712, 770, 839
Hpy8I GTNNAC 2 cut(s) 139, 790
Hpy99I CGWCG 3 cut(s) 314, 358, 791
HpyAV CCTTC 1 cut(s) 623
HpyCH4IV ACGT 2 cut(s) 318, 444
HpyCH4V TGCA 2 cut(s) 375, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 469
HpyF3I CTNAG 2 cut(s) 74, 224
HpySE526I ACGT 2 cut(s) 318, 444
Hsp92II CATG 4 cut(s) 154, 441, 730, 842
Kzo9I GATC 4 cut(s) 288, 295, 390, 598
LmnI GCTCC 3 cut(s) 332, 340, 344
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 1 cut(s) 384
MabI ACCWGGT 1 cut(s) 735
MaeI CTAG 1 cut(s) 480
MaeII ACGT 2 cut(s) 318, 444
MaeIII GTNAC 2 cut(s) 549, 739
MalI GATC 4 cut(s) 290, 297, 392, 600
MboI GATC 4 cut(s) 288, 295, 390, 598
MboII GAAGA 3 cut(s) 342, 351, 790
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 1 cut(s) 208
MmeI TCCRAC 2 cut(s) 301, 362
MroXI GAANNNNTTC 1 cut(s) 591
MslI CAYNNNNRTG 1 cut(s) 558
MspI CCGG 6 cut(s) 96, 246, 381, 406, 584, 690
MspR9I CCNGG 3 cut(s) 584, 690, 737
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 1 cut(s) 737
MwoI GCNNNNNNNGC 1 cut(s) 469
NciI CCSGG 2 cut(s) 584, 690
NdeI CATATG 1 cut(s) 655
NdeII GATC 4 cut(s) 288, 295, 390, 598
NlaIII CATG 4 cut(s) 154, 441, 730, 842
NmuCI GTSAC 1 cut(s) 739
PagI TCATGA 1 cut(s) 838
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 3 cut(s) 708, 747, 842
PflFI GACNNNGTC 1 cut(s) 512
PflMI CCANNNNNTGG 2 cut(s) 482, 718
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 3 cut(s) 276, 388, 471
Ple19I CGATCG 1 cut(s) 393
PpuMI RGGWCCY 1 cut(s) 674
Psp124BI GAGCTC 1 cut(s) 337
Psp1406I AACGTT 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 674
Psp6I CCWGG 1 cut(s) 735
PspEI GGTNACC 1 cut(s) 739
PspFI CCCAGC 1 cut(s) 475
PspGI CCWGG 1 cut(s) 735
PspPI GGNCC 2 cut(s) 638, 674
PspPPI RGGWCCY 1 cut(s) 674
PsrI GAACNNNNNNTAC 2 cut(s) 572, 604
PsuI RGATCY 1 cut(s) 598
PsyI GACNNNGTC 1 cut(s) 512
PvuI CGATCG 1 cut(s) 393
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 558
SacI GAGCTC 1 cut(s) 337
SalI GTCGAC 1 cut(s) 788
SatI GCNGC 3 cut(s) 275, 387, 470
Sau3AI GATC 4 cut(s) 288, 295, 390, 598
Sau96I GGNCC 2 cut(s) 638, 674
ScrFI CCNGG 3 cut(s) 584, 690, 737
SduI GDGCHC 1 cut(s) 337
SexAI ACCWGGT 1 cut(s) 735
SfaNI GCATC 1 cut(s) 384
SinI GGWCC 2 cut(s) 638, 674
SmiMI CAYNNNNRTG 1 cut(s) 558
Sse9I AATT 1 cut(s) 208
SsiI CCGC 3 cut(s) 275, 386, 602
SspMI CTAG 1 cut(s) 480
SstI GAGCTC 1 cut(s) 337
StyD4I CCNGG 3 cut(s) 582, 688, 735
TaiI ACGT 2 cut(s) 321, 447
TaqI TCGA 7 cut(s) 65, 131, 215, 302, 679, 706, 789
TasI AATT 1 cut(s) 208
TauI GCSGC 2 cut(s) 277, 389
TfiI GAWTC 3 cut(s) 708, 747, 842
TscAI CASTG 2 cut(s) 24, 174
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 1 cut(s) 469
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 4 cut(s) 443, 560, 715, 815
TspRI CASTG 2 cut(s) 24, 174
Tth111I GACNNNGTC 1 cut(s) 512
Van91I CCANNNNNTGG 2 cut(s) 482, 718
VpaK11BI GGWCC 2 cut(s) 638, 674
XagI CCTNNNNNAGG 2 cut(s) 666, 810
XmiI GTMKAC 1 cut(s) 789
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.