Rorug07G0209500

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
18460539 .. 18466387
5849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0209500.1

Sequence Viewer

Length: 783 bp
ATGGAGATAGAACAGAAACAAGCCCAGCTGATCGATCACTTTGTGAAGCAAGCCTCTACTCTCCAAGGCTCTTCTCTCGTCAGCCTCATCGTCCAACTCACCTCTCACAATTCCCTCTTCGCTTTCTCTGAGATTCTGGCCGTCCCCAATGTCCTCCAGCTTCAAGGAACTGAATATGCTGTATACATTGATATGCTTCGCCTCTTTGCTCATGGTACATGGAGCGATTATAAAAGTAATGCTAGCCTTCTTCCACCACTAGTCCCAGATCAAATCAACAAGCTGAAGCAACTTACTGTGCTGTCTCTAGCTGAGGCGAATAAGGTTCTATCCTATGATCAACTCCTTGAGCAACTTGATCTTTCAAATGTACGTGAACTTGAAGACTTTCTTATCAATGAATGCATGTATATGGGCATAATCAAAGGGAAGTTGGATCATTTGAAAAGATCTGTTGAGGTTCAGTTTGCAGCTGGGAGGGATCTGAAACCTGGACAGCTTGGGAATATAATAGAGACCTTAACGGATTGGTTAGCCACTACCGACAATGTACTTCTCACAATTGAGGAGAAGATCAAATGGGCAGATAAGAAGTGTGAGTTGAATGCAACACACCAAAAGGAAGTCAAGGACAGAGTAGAAGAAGTGAAGAAGTCTCTTAATCACAACAGGTTGCCTCGTGAATACCGTGTTGAAGACTTTATGTTTGGTGAACCAGCTGGATTAATGGACTATGAAGAAGATCGAACCCGAATGAAGAGGAGAAGGTCGCCAAGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

260

Amino Acids

29.97

Weight (kDa)

5.76

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSN7_HB_subdom PF22061 13 - 43 9.4e-06 CSN7 helical bundle subdomain
PCI PF01399 82 - 155 8.1e-08 PCI domain
CSN7a_helixI PF18392 167 - 213 9.7e-06 COP9 signalosome complex subunit 7a helix I domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AccI GTMKAC 1 cut(s) 183
AclWI GGATC 2 cut(s) 444, 489
AcoI YGGCCR 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 305
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 3 cut(s) 217, 372, 552
AgsI TTSAA 6 cut(s) 164, 366, 383, 445, 604, 695
AhlI ACTAGT 1 cut(s) 259
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 7 cut(s) 28, 160, 283, 311, 473, 499, 719
AluI AGCT 7 cut(s) 28, 160, 283, 311, 473, 499, 719
Alw26I GTCTC 3 cut(s) 309, 509, 660
AlwI GGATC 2 cut(s) 444, 489
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 470
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
AseI ATTAAT 1 cut(s) 725
Asp700I GAANNNNTTC 1 cut(s) 387
AsuHPI GGTGA 2 cut(s) 91, 722
AsuNHI GCTAGC 1 cut(s) 242
BauI CACGAG 1 cut(s) 678
BbsI GAAGAC 2 cut(s) 390, 702
BbvCI CCTCAGC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 482
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 492
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 3 cut(s) 309, 509, 660
BcuI ACTAGT 1 cut(s) 259
BfaI CTAG 3 cut(s) 243, 260, 308
BglII AGATCT 1 cut(s) 449
BisI GCNGC 1 cut(s) 471
BlsI GCNGC 1 cut(s) 472
Bme1390I CCNGG 1 cut(s) 492
BmrFI CCNGG 1 cut(s) 492
BmtI GCTAGC 1 cut(s) 246
BpiI GAAGAC 2 cut(s) 390, 702
BpmI CTGGAG 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 368
Bsa29I ATCGAT 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 492
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 64
BseMII CTCAG 2 cut(s) 120, 303
BseRI GAGGAG 2 cut(s) 581, 775
BseXI GCAGC 1 cut(s) 482
BseYI CCCAGC 2 cut(s) 24, 473
BshFI GGCC 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 33
BslFI GGGAC 2 cut(s) 128, 248
BsmAI GTCTC 3 cut(s) 309, 509, 660
BsmFI GGGAC 2 cut(s) 128, 248
BsmI GAATGC 2 cut(s) 407, 610
BsnI GGCC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 509
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 2 cut(s) 121, 304
BspDI ATCGAT 1 cut(s) 33
BspOI GCTAGC 1 cut(s) 246
BspPI GGATC 2 cut(s) 444, 489
BspQI GCTCTTC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 509
BssECI CCNNGG 1 cut(s) 64
BssNAI GTATAC 1 cut(s) 184
BssSI CACGAG 1 cut(s) 678
BssT1I CCWWGG 1 cut(s) 64
Bst1107I GTATAC 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 678
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 2 cut(s) 298, 689
Bst6I CTCTTC 3 cut(s) 76, 122, 752
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 51, 244
BstDEI CTNAG 2 cut(s) 129, 312
BstMAI GTCTC 3 cut(s) 309, 509, 660
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 1 cut(s) 409
BstSCI CCNGG 1 cut(s) 490
BstV1I GCAGC 1 cut(s) 482
BstV2I GAAGAC 2 cut(s) 390, 702
BstX2I RGATCY 2 cut(s) 449, 481
BstYI RGATCY 2 cut(s) 449, 481
BstZ17I GTATAC 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 1 cut(s) 140
BsuTUI ATCGAT 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 51, 244
ClaI ATCGAT 1 cut(s) 33
Csp6I GTAC 3 cut(s) 216, 371, 551
CviAII CATG 3 cut(s) 212, 219, 406
CviQI GTAC 3 cut(s) 216, 371, 551
DdeI CTNAG 2 cut(s) 129, 312
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 3 cut(s) 76, 122, 752
EarI CTCTTC 3 cut(s) 76, 122, 752
Eco130I CCWWGG 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 509
Eco57I CTGAAG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 64
EcoT22I ATGCAT 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 3 cut(s) 215, 222, 409
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 2 cut(s) 128, 248
FatI CATG 3 cut(s) 211, 218, 405
FbaI TGATCA 1 cut(s) 337
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 471
FspBI CTAG 3 cut(s) 243, 260, 308
GluI GCNGC 1 cut(s) 471
GsaI CCCAGC 2 cut(s) 28, 477
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 1 cut(s) 140
Hin1II CATG 3 cut(s) 215, 222, 409
HinfI GANTC 1 cut(s) 133
HphI GGTGA 2 cut(s) 91, 722
Hpy166II GTNNAC 3 cut(s) 184, 377, 713
Hpy188I TCNGA 2 cut(s) 130, 486
Hpy188III TCNNGA 1 cut(s) 680
Hpy8I GTNNAC 3 cut(s) 184, 377, 713
HpyAV CCTTC 2 cut(s) 257, 759
HpyCH4III ACNGT 2 cut(s) 298, 689
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 3 cut(s) 405, 470, 608
HpyF3I CTNAG 2 cut(s) 129, 312
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 3 cut(s) 215, 222, 409
Ksp22I TGATCA 1 cut(s) 337
LguI GCTCTTC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 222
Lsp1109I GCAGC 1 cut(s) 482
MaeI CTAG 3 cut(s) 243, 260, 308
MaeII ACGT 1 cut(s) 373
MfeI CAATTG 1 cut(s) 561
MflI RGATCY 2 cut(s) 449, 481
MluCI AATT 2 cut(s) 109, 561
MmeI TCCRAC 2 cut(s) 118, 414
Mph1103I ATGCAT 1 cut(s) 407
MroXI GAANNNNTTC 1 cut(s) 387
MseI TTAA 3 cut(s) 521, 660, 725
MslI CAYNNNNRTG 2 cut(s) 191, 410
MspA1I CMGCKG 3 cut(s) 28, 473, 719
MspR9I CCNGG 1 cut(s) 492
MunI CAATTG 1 cut(s) 561
Mva1269I GAATGC 2 cut(s) 407, 610
MvaI CCWGG 1 cut(s) 492
NheI GCTAGC 1 cut(s) 242
NlaIII CATG 3 cut(s) 215, 222, 409
NsiI ATGCAT 1 cut(s) 407
NspI RCATGY 1 cut(s) 409
PciSI GCTCTTC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 685
PctI GAATGC 2 cut(s) 407, 610
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 472
Ppu21I YACGTR 1 cut(s) 374
PshBI ATTAAT 1 cut(s) 725
PsiI TTATAA 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 490
PspFI CCCAGC 2 cut(s) 24, 473
PspGI CCWGG 1 cut(s) 490
PsuI RGATCY 2 cut(s) 449, 481
PvuII CAGCTG 3 cut(s) 28, 473, 719
RsaI GTAC 3 cut(s) 217, 372, 552
RsaNI GTAC 3 cut(s) 216, 371, 551
RseI CAYNNNNRTG 2 cut(s) 191, 410
SapI GCTCTTC 1 cut(s) 76
SaqAI TTAA 3 cut(s) 521, 660, 725
SatI GCNGC 1 cut(s) 471
ScrFI CCNGG 1 cut(s) 492
SmiMI CAYNNNNRTG 2 cut(s) 191, 410
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SpeI ACTAGT 1 cut(s) 259
Sse9I AATT 2 cut(s) 109, 561
SspMI CTAG 3 cut(s) 243, 260, 308
StyD4I CCNGG 1 cut(s) 490
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 298, 689
TaiI ACGT 1 cut(s) 376
TaqI TCGA 2 cut(s) 33, 745
TasI AATT 2 cut(s) 109, 561
TatI WGTACW 1 cut(s) 550
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 3 cut(s) 521, 660, 725
Tru9I TTAA 3 cut(s) 521, 660, 725
TseI GCWGC 1 cut(s) 470
TspDTI ATGAA 3 cut(s) 414, 750, 770
TspGWI ACGGA 1 cut(s) 539
VspI ATTAAT 1 cut(s) 725
XceI RCATGY 1 cut(s) 409
XmiI GTMKAC 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 3 cut(s) 243, 260, 308
Zsp2I ATGCAT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.