Rmu_sc0006151.1_g000002

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006151.1
OG0000192
Physical Location & Seq
Forward (+)
842 .. 2886
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006151.1_g000002.1.cds

Sequence Viewer

Length: 588 bp
atggggaatgtggccgcttcgttcaactctccagctatgactactacttttgtcgtgaagttcttgggcgaaagacctgacatttatgaaaaagtccgaagtgaacaactggagattttgaagttcaaaaaatctggcgaggcactcaatcgggatgatatgcataaaatgaagtattcgtggaacgtagccctggaggcgatgaggctcataccacctcttcagggaacatttagagaggctgcaacagacttcacttaccaaggttatacaattcctaaaggatggaagggattgagcaccacaaccatgaaccctgaatattttccagcgccagaagagtttgatcctacaaggttcgagaaagcaagtcttccgccttatacaaacatcccattcgggagcggtcctcgaatttgccccggaaaggactacgctcgtctgcaaattcttagtttcatgcaccatcttgttataagattcaaatgggaacttgtgaaccctaattgcaagatcactggtggtatgaatccctttccagttgatgggctgaaggttcgcctccaagctcaacccagtcaagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

195

Amino Acids

22.14

Weight (kDa)

9.18

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
AccB7I CCANNNNNTGG 1 cut(s) 545
AccBSI CCGCTC 1 cut(s) 405
AciI CCGC 3 cut(s) 15, 377, 405
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 2 cut(s) 414, 447
AcuI CTGAAG 2 cut(s) 206, 572
AfiI CCNNNNNNNGG 3 cut(s) 224, 427, 545
AgsI TTSAA 4 cut(s) 25, 121, 127, 484
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 3 cut(s) 35, 569, 584
AluI AGCT 3 cut(s) 35, 569, 584
Alw21I GWGCWC 1 cut(s) 302
AlwI GGATC 1 cut(s) 341
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 2 cut(s) 414, 447
Asp700I GAANNNNTTC 1 cut(s) 324
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 407
AsuC2I CCSGG 1 cut(s) 423
AvaII GGWCC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 229
BccI CCATC 3 cut(s) 279, 474, 539
BciT130I CCWGG 1 cut(s) 194
BcnI CCSGG 1 cut(s) 423
BfoI RGCGCY 1 cut(s) 335
BglI GCCNNNNNGGC 1 cut(s) 197
BisI GCNGC 2 cut(s) 15, 243
BlsI GCNGC 2 cut(s) 16, 244
Bme1390I CCNGG 2 cut(s) 194, 423
Bme18I GGWCC 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 407
BmrFI CCNGG 2 cut(s) 194, 423
BmrI ACTGGG 1 cut(s) 570
BmuI ACTGGG 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 394, 426
BpmI CTGGAG 3 cut(s) 15, 131, 215
BpuMI CCSGG 1 cut(s) 423
BsaJI CCNNGG 3 cut(s) 192, 262, 421
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 427, 545
Bse1I ACTGG 4 cut(s) 114, 523, 539, 576
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 3 cut(s) 192, 262, 421
BseGI GGATG 3 cut(s) 160, 290, 390
BseLI CCNNNNNNNGG 3 cut(s) 224, 427, 545
BseNI ACTGG 4 cut(s) 114, 523, 539, 576
BseXI GCAGC 1 cut(s) 229
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 423
BslI CCNNNNNNNGG 3 cut(s) 224, 427, 545
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 346, 513
BspACI CCGC 3 cut(s) 15, 377, 405
BspANI GGCC 1 cut(s) 14
BspPI GGATC 1 cut(s) 341
BsrBI CCGCTC 1 cut(s) 405
BsrI ACTGG 4 cut(s) 114, 523, 539, 576
BssECI CCNNGG 3 cut(s) 192, 262, 421
BssMI GATC 2 cut(s) 346, 513
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 194
Bst6I CTCTTC 2 cut(s) 225, 333
BstDEI CTNAG 1 cut(s) 452
BstF5I GGATG 3 cut(s) 160, 290, 390
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 2 cut(s) 349, 516
BstMBI GATC 2 cut(s) 346, 513
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 2 cut(s) 192, 421
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 365
BsuRI GGCC 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 215
BtsCI GGATG 3 cut(s) 160, 290, 390
BtsIMutI CAGTG 1 cut(s) 516
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 407
CviAII CATG 2 cut(s) 310, 460
CviJI RGCY 8 cut(s) 14, 35, 191, 208, 242, 550, 569, 584
CviKI_1 RGCY 8 cut(s) 14, 35, 191, 208, 242, 550, 569, 584
DdeI CTNAG 1 cut(s) 452
DpnI GATC 2 cut(s) 348, 515
DpnII GATC 2 cut(s) 346, 513
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 225, 333
EarI CTCTTC 2 cut(s) 225, 333
EciI GGCGGA 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 407
Eco57I CTGAAG 2 cut(s) 206, 572
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 2 cut(s) 313, 463
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FatI CATG 2 cut(s) 309, 459
Fnu4HI GCNGC 2 cut(s) 15, 243
FokI GGATG 3 cut(s) 167, 297, 377
Fsp4HI GCNGC 2 cut(s) 15, 243
GlaI GCGC 1 cut(s) 333
GluI GCNGC 2 cut(s) 15, 243
GsuI CTGGAG 3 cut(s) 15, 131, 215
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 423
HhaI GCGC 1 cut(s) 334
Hin1II CATG 2 cut(s) 313, 463
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 2 cut(s) 480, 529
HpaII CCGG 1 cut(s) 423
Hpy166II GTNNAC 2 cut(s) 104, 499
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 4 cut(s) 55, 152, 361, 400
Hpy8I GTNNAC 2 cut(s) 104, 499
HpyAV CCTTC 2 cut(s) 283, 547
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 5 cut(s) 163, 245, 445, 463, 510
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 452
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 313, 463
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 2 cut(s) 346, 513
LmnI GCTCC 1 cut(s) 402
Lsp1109I GCAGC 1 cut(s) 229
MaeII ACGT 1 cut(s) 186
MalI GATC 2 cut(s) 348, 515
MbiI CCGCTC 1 cut(s) 405
MboI GATC 2 cut(s) 346, 513
MboII GAAGA 3 cut(s) 212, 350, 365
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 4 cut(s) 273, 414, 447, 505
MnlI CCTC 7 cut(s) 133, 190, 198, 228, 232, 420, 572
Mph1103I ATGCAT 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 1 cut(s) 586
MslI CAYNNNNRTG 1 cut(s) 308
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 2 cut(s) 194, 423
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 423
NdeII GATC 2 cut(s) 346, 513
NlaIII CATG 2 cut(s) 313, 463
NsiI ATGCAT 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 2 cut(s) 480, 529
PflMI CCANNNNNTGG 1 cut(s) 545
PkrI GCNGC 2 cut(s) 16, 244
PsiI TTATAA 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspPI GGNCC 1 cut(s) 407
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 586
SatI GCNGC 2 cut(s) 15, 243
Sau3AI GATC 2 cut(s) 346, 513
Sau96I GGNCC 1 cut(s) 407
ScrFI CCNGG 2 cut(s) 194, 423
SduI GDGCHC 1 cut(s) 302
SetI ASST 9 cut(s) 37, 79, 189, 220, 268, 359, 558, 571, 586
SinI GGWCC 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 4 cut(s) 273, 414, 447, 505
SsiI CCGC 3 cut(s) 15, 377, 405
SspI AATATT 1 cut(s) 323
StyD4I CCNGG 2 cut(s) 192, 421
StyI CCWWGG 1 cut(s) 262
TaiI ACGT 1 cut(s) 189
TaqI TCGA 2 cut(s) 360, 412
TasI AATT 4 cut(s) 273, 414, 447, 505
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 2 cut(s) 480, 529
Tru1I TTAA 1 cut(s) 586
Tru9I TTAA 1 cut(s) 586
TscAI CASTG 1 cut(s) 523
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 5 cut(s) 102, 185, 326, 448, 542
TspRI CASTG 1 cut(s) 523
Van91I CCANNNNNTGG 1 cut(s) 545
VpaK11BI GGWCC 1 cut(s) 407
XapI RAATTY 2 cut(s) 414, 447
XmnI GAANNNNTTC 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.