Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Reverse (-)

48021641 .. 48022261

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58082

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTTGAGAGTTAATACTCTTAAGTCAGCAAGGTTCATTTACCAAGTTTTCTCATCAGATTGCAATGCCACGTGTCACAAATCTGGAGGTTCAGTTAGCAAGCTTTCTTATCGACACACAAGAGCGCCGATTGTTTCCCCTGAACCGGAGAAATTCGATCCGTCAAGATTTGAAGGAAAAGGACCGGCACCTTACACATTTATTCCATTCGGCGGAGGCCCGAGAATGTGTCCAGGGAATGAGTACGCTCGGGTGGTGATATTGGTGTTCATGCACCACTTGGTCACAAGGTTCAAGTGGGAGAAGGTTTTTCCTGATGAGAAGACCATTGTTGTCGCTCTCCCCACCCCCGCCAAGGGACTTCCCATCCGCCTTTTTCATCACCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

130

Amino Acids

14.7

Weight (kDa)

9.91

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	33 - 102	3.2e-16	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AciI	CCGC	3 cut(s)	213, 351, 370
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	152
AcvI	CACGTG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	4 cut(s)	145, 212, 355, 356
AflII	CTTAAG	1 cut(s)	20
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	173, 295
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
AlwI	GGATC	1 cut(s)	152
Ama87I	CYCGRG	2 cut(s)	220, 249
AoxI	GGCC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	182, 218
AsuHPI	GGTGA	2 cut(s)	268, 374
AvaI	CYCGRG	2 cut(s)	220, 249
AvaII	GGWCC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	187
BbrPI	CACGTG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	329
BccI	CCATC	1 cut(s)	374
BciT130I	CCWGG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	2 cut(s)	220, 249
BmgT120I	GGNCC	2 cut(s)	182, 218
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	233, 354
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 212, 355, 356
Bse118I	RCCGGY	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	233, 354
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	4 cut(s)	145, 212, 355, 356
BseMI	GCAATG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	187
BsiHKCI	CYCGRG	2 cut(s)	220, 249
BsiSI	CCGG	2 cut(s)	146, 185
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	4 cut(s)	145, 212, 355, 356
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	219
BsoBI	CYCGRG	2 cut(s)	220, 249
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	3 cut(s)	213, 351, 370
BspANI	GGCC	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	187
BspTI	CTTAAG	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	233, 354
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	234
BstAFI	CTTAAG	1 cut(s)	20
BstBAI	YACGTR	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	366
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstV2I	GAAGAC	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	101
CfoI	GCGC	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	182, 218
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	2 cut(s)	103, 219
CviKI_1	RGCY	2 cut(s)	103, 219
CviQI	GTAC	1 cut(s)	244
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
EciI	GGCGGA	2 cut(s)	228, 359
Eco130I	CCWWGG	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	182
Eco72I	CACGTG	1 cut(s)	72
Eco88I	CYCGRG	2 cut(s)	220, 249
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	274
FaiI	YATR	1 cut(s)	272
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	1 cut(s)	270
FauI	CCCGC	1 cut(s)	358
FokI	GGATG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	2 cut(s)	146, 185
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	101
HpaII	CCGG	2 cut(s)	146, 185
HphI	GGTGA	2 cut(s)	268, 374
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	3 cut(s)	84, 165, 314
HpyAV	CCTTC	2 cut(s)	167, 298
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	63, 274
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	7 cut(s)	69, 153, 159, 198, 219, 246, 327
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	74, 283
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	334
MluCI	AATT	1 cut(s)	152
MnlI	CCTC	2 cut(s)	80, 209
MseI	TTAA	2 cut(s)	12, 21
MspCI	CTTAAG	1 cut(s)	20
MspI	CCGG	2 cut(s)	146, 185
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	2 cut(s)	74, 283
PmaCI	CACGTG	1 cut(s)	72
PmlI	CACGTG	1 cut(s)	72
Ppu21I	YACGTR	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	232
PspCI	CACGTG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	2 cut(s)	182, 218
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	12, 21
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	2 cut(s)	182, 218
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	7 cut(s)	35, 74, 91, 105, 193, 293, 309
SinI	GGWCC	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	3 cut(s)	213, 351, 370
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	2 cut(s)	112, 156
TasI	AATT	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	12, 21
Tru9I	TTAA	2 cut(s)	12, 21
TseFI	GTSAC	2 cut(s)	74, 283
Tsp45I	GTSAC	2 cut(s)	74, 283
TspDTI	ATGAA	3 cut(s)	25, 259, 368
TspGWI	ACGGA	1 cut(s)	150
Vha464I	CTTAAG	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.