RchiOBHm_Chr5g0024721

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000192
Physical Location & Seq
Reverse (-)
18789743 .. 18790135
393 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30445

Sequence Viewer

Length: 393 bp
ATGGCCGTGCTGTACACTGCTGCGGGGAATAAATTTCTGTTTTCGAACGAGAACAAACTAGTCAAATCTTGGTGGCCTGCGAACTTTGAGAAGATCTTTGCCAACTCTGAGAAAACAGACACCACCCAAGAGTCCATTAGGTTGCGCAAAGTCTTGTCTCTGTTTCTCAAGCCTGATGCTCTTCACAGGTACATAAGGGTCATGGACGAGGTCACCAAACAACATCTGGACATGTATTGGTCATCCTCCTCGTCCTCATCAGTTGATTATGTAAAAGAAGAGGATCAGAAAGTGATTATCAAAGTCCACCTATTAGCAAAGAAGTACACCTTCACTTTAGCATGTAGACTCTTCTTAAACATTAAGGATCCAAAGCTAGTTGCCATTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

130

Amino Acids

15.13

Weight (kDa)

9.43

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 146
AccI GTMKAC 1 cut(s) 346
AciI CCGC 1 cut(s) 23
AclWI GGATC 3 cut(s) 291, 362, 375
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 32
AfaI GTAC 3 cut(s) 14, 191, 326
AflIII ACRYGT 1 cut(s) 231
AhlI ACTAGT 1 cut(s) 58
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 3 cut(s) 291, 362, 375
AoxI GGCC 2 cut(s) 3, 74
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 32
AspLEI GCGC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 205
AsuII TTCGAA 1 cut(s) 44
BamHI GGATCC 1 cut(s) 367
BbvI GCAGC 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 162
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 3 cut(s) 59, 377, 391
BglII AGATCT 1 cut(s) 93
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 369
BmsI GCATC 1 cut(s) 166
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 152
BseGI GGATG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 99
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 2 cut(s) 5, 76
BsmAI GTCTC 1 cut(s) 162
BsnI GGCC 2 cut(s) 5, 76
Bsp119I TTCGAA 1 cut(s) 44
Bsp1407I TGTACA 1 cut(s) 12
Bsp143I GATC 3 cut(s) 93, 283, 367
BspACI CCGC 1 cut(s) 23
BspANI GGCC 2 cut(s) 5, 76
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 369
BspPI GGATC 3 cut(s) 291, 362, 375
BspQI GCTCTTC 1 cut(s) 186
BspT104I TTCGAA 1 cut(s) 44
BsrGI TGTACA 1 cut(s) 12
BssMI GATC 3 cut(s) 93, 283, 367
Bst6I CTCTTC 3 cut(s) 186, 273, 356
BstAUI TGTACA 1 cut(s) 12
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 108
BstEII GGTNACC 1 cut(s) 211
BstF5I GGATG 1 cut(s) 242
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 3 cut(s) 96, 286, 370
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 3 cut(s) 93, 283, 367
BstNSI RCATGY 2 cut(s) 235, 345
BstPI GGTNACC 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 2 cut(s) 93, 367
BstYI RGATCY 2 cut(s) 93, 367
BsuRI GGCC 2 cut(s) 5, 76
BtsCI GGATG 1 cut(s) 242
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 1 cut(s) 147
Csp6I GTAC 3 cut(s) 13, 190, 325
CviAII CATG 3 cut(s) 202, 232, 342
CviJI RGCY 4 cut(s) 5, 76, 172, 376
CviKI_1 RGCY 4 cut(s) 5, 76, 172, 376
CviQI GTAC 3 cut(s) 13, 190, 325
DdeI CTNAG 1 cut(s) 108
DpnI GATC 3 cut(s) 95, 285, 369
DpnII GATC 3 cut(s) 93, 283, 367
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 186, 273, 356
EarI CTCTTC 3 cut(s) 186, 273, 356
Eco91I GGTNACC 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 211
FaeI CATG 3 cut(s) 205, 235, 345
FaiI YATR 5 cut(s) 194, 203, 233, 270, 343
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FatI CATG 3 cut(s) 201, 231, 341
FauI CCCGC 1 cut(s) 16
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 3 cut(s) 59, 377, 391
FspI TGCGCA 1 cut(s) 146
GlaI GCGC 1 cut(s) 146
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 2 cut(s) 5, 76
HhaI GCGC 1 cut(s) 147
Hin1II CATG 3 cut(s) 205, 235, 345
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HinfI GANTC 2 cut(s) 131, 348
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 4 cut(s) 15, 307, 327, 347
Hpy188I TCNGA 2 cut(s) 109, 288
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 4 cut(s) 15, 307, 327, 347
HpyAV CCTTC 1 cut(s) 340
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 3 cut(s) 205, 235, 345
HspAI GCGC 1 cut(s) 145
Kzo9I GATC 3 cut(s) 93, 283, 367
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 4 cut(s) 90, 172, 186, 212
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 1 cut(s) 166
MaeI CTAG 3 cut(s) 59, 377, 391
MaeIII GTNAC 1 cut(s) 211
MalI GATC 3 cut(s) 95, 285, 369
MboI GATC 3 cut(s) 93, 283, 367
MboII GAAGA 4 cut(s) 103, 173, 290, 343
MflI RGATCY 2 cut(s) 93, 367
MluCI AATT 1 cut(s) 32
MlyI GAGTC 2 cut(s) 140, 342
MnlI CCTC 5 cut(s) 202, 256, 259, 265, 274
MseI TTAA 2 cut(s) 356, 363
NdeII GATC 3 cut(s) 93, 283, 367
NlaIII CATG 3 cut(s) 205, 235, 345
NlaIV GGNNCC 1 cut(s) 369
NmuCI GTSAC 1 cut(s) 211
NsbI TGCGCA 1 cut(s) 146
NspI RCATGY 2 cut(s) 235, 345
NspV TTCGAA 1 cut(s) 44
PciI ACATGT 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 186
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 2 cut(s) 139, 342
PpsI GAGTC 2 cut(s) 139, 342
PscI ACATGT 1 cut(s) 231
PspEI GGTNACC 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 369
PsuI RGATCY 2 cut(s) 93, 367
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 3 cut(s) 14, 191, 326
RsaNI GTAC 3 cut(s) 13, 190, 325
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 356, 363
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 3 cut(s) 93, 283, 367
SchI GAGTC 2 cut(s) 140, 342
SetI ASST 6 cut(s) 143, 191, 213, 312, 332, 378
SfaNI GCATC 1 cut(s) 166
SfuI TTCGAA 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 1 cut(s) 32
SsiI CCGC 1 cut(s) 23
SspMI CTAG 3 cut(s) 59, 377, 391
TaqI TCGA 1 cut(s) 44
TasI AATT 1 cut(s) 32
TatI WGTACW 2 cut(s) 12, 324
Tru1I TTAA 2 cut(s) 356, 363
Tru9I TTAA 2 cut(s) 356, 363
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 211
TspRI CASTG 1 cut(s) 22
Tth111I GACNNNGTC 1 cut(s) 209
XapI RAATTY 1 cut(s) 32
XceI RCATGY 2 cut(s) 235, 345
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 346
XspI CTAG 3 cut(s) 59, 377, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.