Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Forward (+)

35352545 .. 35353588

Gene Structure 1044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0246600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGATCATCATGTCGGTGCCAAGTCAGCATCTGACGTCACATTTCGAGCAAAATTTAAATTTTGGACGTGCGTGATGAAAAATGAAAAATGCAAGATAGATATCAGCTACCTCACAAGCCTACCAAGAGCATCTGAGAAGCTGCAGATCTTCAATGCCGATCTCAACCAGCCCGAAAGCTTCAATGAAGCAATTGAGGGATGCATCGGGGTCTTCCATGTTGCTCATCCTATGCCTGACAAAGAACGTGATGAAGCAATAGTAACCAAAAAAGCCGTAGAAGGCACCCTAGGCATATTGAAAGCCTGCCTGAATTCTAAGACTGTAAAGAAGGTTGTATACACTTCTATGAAAAGAACAGAGATATGGTACGTGGATGAGACTACATGGAGTGATATTGAATTTCGTAGGTCTATGAAATTATTTGGAACTTCATTTGTGGCTGCCAAGACCAAGACAGAGCAAGCAGCCCTTGAATTCGCTGAAATAAGTGGATTGGAACTTGAGACTTTGATCCCTCGATTAAGGCCTGGCAATTCAGCCCATGACCTGTTAACCGCCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

188

Amino Acids

21.2

Weight (kDa)

8.3

Isoelectric Point (pI)

28.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
3Beta_HSD	PF01073	39 - 117	2.7e-06	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	17, 284
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	2 cut(s)	558, 562
AclWI	GGATC	2 cut(s)	12, 508
AcsI	RAATTY	5 cut(s)	53, 59, 313, 401, 476
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	154, 184, 301, 401, 476
AjiI	CACGTC	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	3 cut(s)	108, 142, 180
AluI	AGCT	3 cut(s)	108, 142, 180
Alw26I	GTCTC	2 cut(s)	374, 500
AlwI	GGATC	2 cut(s)	12, 508
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	1 cut(s)	527
ApeKI	GCWGC	3 cut(s)	142, 443, 467
ApoI	RAATTY	5 cut(s)	53, 59, 313, 401, 476
AspA2I	CCTAGG	1 cut(s)	289
AvrII	CCTAGG	1 cut(s)	289
BanI	GGYRCC	2 cut(s)	17, 284
BarI	GAAGNNNNNNTAC	2 cut(s)	323, 355
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	129, 430, 479
BceAI	ACGGC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	531
BcoDI	GTCTC	2 cut(s)	374, 500
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	143
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	3 cut(s)	143, 444, 468
BlnI	CCTAGG	1 cut(s)	289
BlsI	GCNGC	3 cut(s)	144, 445, 469
Bme1390I	CCNGG	1 cut(s)	531
BmgBI	CACGTC	1 cut(s)	69
BmiI	GGNNCC	2 cut(s)	19, 286
BmrFI	CCNGG	1 cut(s)	531
BmsI	GCATC	4 cut(s)	38, 140, 191, 213
BpiI	GAAGAC	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	524
BsaAI	YACGTR	1 cut(s)	373
BsaBI	GATNNNNATC	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	3 cut(s)	206, 226, 382
BseJI	GATNNNNATC	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	126
BseXI	GCAGC	3 cut(s)	129, 430, 479
BshFI	GGCC	1 cut(s)	529
BshNI	GGYRCC	2 cut(s)	17, 284
BsmAI	GTCTC	2 cut(s)	374, 500
BsnI	GGCC	1 cut(s)	529
Bsp143I	GATC	4 cut(s)	4, 147, 160, 513
BspACI	CCGC	2 cut(s)	558, 562
BspANI	GGCC	1 cut(s)	529
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	19, 286
BspMAI	CTGCAG	1 cut(s)	147
BspPI	GGATC	2 cut(s)	12, 508
BspT107I	GGYRCC	2 cut(s)	17, 284
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	4 cut(s)	4, 147, 160, 513
BssNAI	GTATAC	1 cut(s)	340
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	289
Bst1107I	GTATAC	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	325
BstACI	GRCGYC	1 cut(s)	36
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	3 cut(s)	307, 465, 562
BstDEI	CTNAG	2 cut(s)	135, 318
BstF5I	GGATG	3 cut(s)	206, 226, 382
BstKTI	GATC	4 cut(s)	7, 150, 163, 516
BstMAI	GTCTC	2 cut(s)	374, 500
BstMBI	GATC	4 cut(s)	4, 147, 160, 513
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 291
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	3 cut(s)	129, 430, 479
BstV2I	GAAGAC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BstZ17I	GTATAC	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	529
BtrI	CACGTC	1 cut(s)	69
BtsCI	GGATG	3 cut(s)	206, 226, 382
Cac8I	GCNNGC	3 cut(s)	307, 465, 562
CaiI	CAGNNNCTG	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	4 cut(s)	11, 218, 387, 545
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	135, 318
DpnI	GATC	4 cut(s)	6, 149, 162, 515
DpnII	GATC	4 cut(s)	4, 147, 160, 513
DraI	TTTAAA	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	529
Eco32I	GATATC	1 cut(s)	103
EcoRI	GAATTC	2 cut(s)	313, 476
EcoRII	CCWGG	1 cut(s)	529
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	4 cut(s)	14, 221, 390, 548
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	4 cut(s)	10, 217, 386, 544
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	3 cut(s)	143, 444, 468
FokI	GGATG	3 cut(s)	213, 213, 389
Fsp4HI	GCNGC	3 cut(s)	143, 444, 468
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	3 cut(s)	143, 444, 468
HaeIII	GGCC	1 cut(s)	529
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	14, 221, 390, 548
HincII	GTYRAC	1 cut(s)	555
HindII	GTYRAC	1 cut(s)	555
HindIII	AAGCTT	1 cut(s)	178
HpaI	GTTAAC	1 cut(s)	555
Hpy166II	GTNNAC	2 cut(s)	340, 555
Hpy188I	TCNGA	2 cut(s)	34, 136
Hpy8I	GTNNAC	2 cut(s)	340, 555
HpyAV	CCTTC	2 cut(s)	275, 325
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	4 cut(s)	36, 68, 247, 372
HpyCH4V	TGCA	3 cut(s)	93, 145, 204
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 291
HpyF3I	CTNAG	2 cut(s)	135, 318
HpySE526I	ACGT	4 cut(s)	36, 68, 247, 372
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	4 cut(s)	14, 221, 390, 548
KspAI	GTTAAC	1 cut(s)	555
Kzo9I	GATC	4 cut(s)	4, 147, 160, 513
LpnPI	CCDG	7 cut(s)	182, 249, 319, 323, 516, 543, 563
Lsp1109I	GCAGC	3 cut(s)	129, 430, 479
LweI	GCATC	4 cut(s)	38, 140, 191, 213
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	4 cut(s)	36, 68, 247, 372
MaeIII	GTNAC	2 cut(s)	37, 262
MalI	GATC	4 cut(s)	6, 149, 162, 515
MboI	GATC	4 cut(s)	4, 147, 160, 513
MboII	GAAGA	2 cut(s)	142, 205
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	147
MluCI	AATT	8 cut(s)	53, 59, 192, 313, 401, 419, 476, 535
MnlI	CCTC	3 cut(s)	122, 190, 528
Mph1103I	ATGCAT	1 cut(s)	206
MseI	TTAA	3 cut(s)	57, 524, 554
MslI	CAYNNNNRTG	2 cut(s)	15, 347
MspR9I	CCNGG	1 cut(s)	531
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	26, 291
NdeII	GATC	4 cut(s)	4, 147, 160, 513
NlaIII	CATG	4 cut(s)	14, 221, 390, 548
NlaIV	GGNNCC	2 cut(s)	19, 286
NmuCI	GTSAC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	529
PkrI	GCNGC	3 cut(s)	144, 445, 469
Ppu21I	YACGTR	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	19, 286
PstI	CTGCAG	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	2 cut(s)	15, 347
SaqAI	TTAA	3 cut(s)	57, 524, 554
SatI	GCNGC	3 cut(s)	143, 444, 468
Sau3AI	GATC	4 cut(s)	4, 147, 160, 513
ScrFI	CCNGG	1 cut(s)	531
SfaNI	GCATC	4 cut(s)	38, 140, 191, 213
SfcI	CTRYAG	1 cut(s)	143
SmiI	ATTTAAAT	1 cut(s)	58
SmiMI	CAYNNNNRTG	2 cut(s)	15, 347
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	8 cut(s)	53, 59, 192, 313, 401, 419, 476, 535
SseBI	AGGCCT	1 cut(s)	529
SsiI	CCGC	2 cut(s)	558, 562
SspMI	CTAG	1 cut(s)	290
StuI	AGGCCT	1 cut(s)	529
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	1 cut(s)	289
SwaI	ATTTAAAT	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	4 cut(s)	39, 71, 250, 375
TaqI	TCGA	2 cut(s)	46, 520
TasI	AATT	8 cut(s)	53, 59, 192, 313, 401, 419, 476, 535
Tru1I	TTAA	3 cut(s)	57, 524, 554
Tru9I	TTAA	3 cut(s)	57, 524, 554
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	3 cut(s)	142, 443, 467
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	7 cut(s)	92, 99, 201, 267, 365, 423, 431
XapI	RAATTY	5 cut(s)	53, 59, 313, 401, 476
XmaJI	CCTAGG	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	290
ZraI	GACGTC	1 cut(s)	37
Zsp2I	ATGCAT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.