RchiOBHm_Chr7g0177351

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000192
Physical Location & Seq
Reverse (-)
368531 .. 369127
597 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15796

Sequence Viewer

Length: 327 bp
ATGAAGTTACACTTACACTGGAATATGTATGCCACACATAAAAACCCGGATTACTTCCCGGATCCTGAGAAGTTCGACCCGTCAAGGTTCCAAGGACAAGGACAAGGACCAGCTCCTTATTCATATGTTCCTTTTGGAGGAGGACCTCGGATGTGCCCTGGAAAAGAGTATGCTCGATTCAAAATACTAGTTTTCATGCATAACGTGGTCACTAGGTTTAAGTGGGAGATGGTTTTTCCGGACGAGAAAATGATCATGGACCCTGTTCTTATTCCTACCAAAGGACTTCCAATTCGCCTCTTTCCTCACAATCATCATCATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

108

Amino Acids

12.74

Weight (kDa)

9.1

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 7 - 95 4e-24 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 238
AclWI GGATC 2 cut(s) 56, 69
AfiI CCNNNNNNNGG 2 cut(s) 137, 281
AgsI TTSAA 1 cut(s) 181
AhlI ACTAGT 1 cut(s) 187
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
AlwI GGATC 2 cut(s) 56, 69
Aor13HI TCCGGA 1 cut(s) 238
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
AspS9I GGNCC 3 cut(s) 107, 143, 259
AsuC2I CCSGG 2 cut(s) 47, 59
AvaII GGWCC 3 cut(s) 107, 143, 259
BaeGI GKGCMC 1 cut(s) 158
BamHI GGATCC 1 cut(s) 61
BccI CCATC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 159
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 2 cut(s) 47, 59
BcuI ACTAGT 1 cut(s) 187
BfaI CTAG 2 cut(s) 188, 213
Bme1390I CCNGG 3 cut(s) 47, 59, 159
Bme18I GGWCC 3 cut(s) 107, 143, 259
BmgT120I GGNCC 3 cut(s) 107, 143, 259
BmiI GGNNCC 3 cut(s) 63, 89, 261
BmrFI CCNGG 3 cut(s) 47, 59, 159
BpuMI CCSGG 2 cut(s) 47, 59
BsaJI CCNNGG 3 cut(s) 91, 146, 157
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 281
Bse1I ACTGG 1 cut(s) 23
BseAI TCCGGA 1 cut(s) 238
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 3 cut(s) 91, 146, 157
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 137, 281
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 158
BsiSI CCGG 3 cut(s) 47, 59, 239
BslI CCNNNNNNNGG 2 cut(s) 137, 281
Bsp1286I GDGCHC 1 cut(s) 158
Bsp13I TCCGGA 1 cut(s) 238
Bsp143I GATC 2 cut(s) 61, 252
BspCNI CTCAG 1 cut(s) 58
BspEI TCCGGA 1 cut(s) 238
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 63, 89, 261
BspPI GGATC 2 cut(s) 56, 69
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 3 cut(s) 91, 146, 157
BssMI GATC 2 cut(s) 61, 252
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 66
BstENI CCTNNNNNAGG 2 cut(s) 135, 279
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 2 cut(s) 64, 255
BstMBI GATC 2 cut(s) 61, 252
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 3 cut(s) 45, 57, 157
BstSLI GKGCMC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 16
CciI TCATGA 1 cut(s) 319
Cfr13I GGNCC 3 cut(s) 107, 143, 259
CviAII CATG 3 cut(s) 196, 256, 320
CviJI RGCY 1 cut(s) 113
CviKI_1 RGCY 1 cut(s) 113
DdeI CTNAG 1 cut(s) 66
DpnI GATC 2 cut(s) 63, 254
DpnII GATC 2 cut(s) 61, 252
Eco130I CCWWGG 1 cut(s) 91
Eco47I GGWCC 3 cut(s) 107, 143, 259
EcoNI CCTNNNNNAGG 2 cut(s) 135, 279
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 3 cut(s) 199, 259, 323
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 3 cut(s) 195, 255, 319
FauNDI CATATG 1 cut(s) 124
FbaI TGATCA 1 cut(s) 252
FokI GGATG 1 cut(s) 163
FspBI CTAG 2 cut(s) 188, 213
HapII CCGG 3 cut(s) 47, 59, 239
Hin1II CATG 3 cut(s) 199, 259, 323
HinfI GANTC 1 cut(s) 177
HpaII CCGG 3 cut(s) 47, 59, 239
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 3 cut(s) 65, 239, 320
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 3 cut(s) 199, 259, 323
Kpn2I TCCGGA 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 2 cut(s) 61, 252
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 9 cut(s) 4, 60, 72, 78, 123, 144, 171, 252, 276
MaeI CTAG 2 cut(s) 188, 213
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 6, 208
MalI GATC 2 cut(s) 63, 254
MboI GATC 2 cut(s) 61, 252
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 291
MnlI CCTC 5 cut(s) 131, 134, 156, 308, 315
Mph1103I ATGCAT 1 cut(s) 201
MroI TCCGGA 1 cut(s) 238
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 318
MspI CCGG 3 cut(s) 47, 59, 239
MspR9I CCNGG 3 cut(s) 47, 59, 159
MvaI CCWGG 1 cut(s) 159
NciI CCSGG 2 cut(s) 47, 59
NdeI CATATG 1 cut(s) 124
NdeII GATC 2 cut(s) 61, 252
NlaIII CATG 3 cut(s) 199, 259, 323
NlaIV GGNNCC 3 cut(s) 63, 89, 261
NmuCI GTSAC 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 201
PagI TCATGA 1 cut(s) 319
PfeI GAWTC 1 cut(s) 177
PfoI TCCNGGA 1 cut(s) 57
PpuMI RGGWCCY 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 3 cut(s) 63, 89, 261
PspPI GGNCC 3 cut(s) 107, 143, 259
PspPPI RGGWCCY 1 cut(s) 143
PsuI RGATCY 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 318
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 2 cut(s) 61, 252
Sau96I GGNCC 3 cut(s) 107, 143, 259
ScrFI CCNGG 3 cut(s) 47, 59, 159
SduI GDGCHC 1 cut(s) 158
SetI ASST 5 cut(s) 89, 115, 148, 207, 218
SinI GGWCC 3 cut(s) 107, 143, 259
SmiMI CAYNNNNRTG 1 cut(s) 318
SpeI ACTAGT 1 cut(s) 187
Sse9I AATT 1 cut(s) 291
SspMI CTAG 2 cut(s) 188, 213
StyD4I CCNGG 3 cut(s) 45, 57, 157
StyI CCWWGG 1 cut(s) 91
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 75, 175
TasI AATT 1 cut(s) 291
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 23
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 17, 111, 184
TspRI CASTG 1 cut(s) 23
VpaK11BI GGWCC 3 cut(s) 107, 143, 259
XagI CCTNNNNNAGG 2 cut(s) 135, 279
XspI CTAG 2 cut(s) 188, 213
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.