Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Forward (+)

20816250 .. 20816789

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGGAGCATTATTTCTTTCTCAACCCATTATTCTGGGCTACCTCAGTTTCCATCATCTCCCTCTCTCTAGTTGTCCTCTTATATAGGCACAGATCACAATTCACTAGCGAAAACCTCCCGCCAGGAAATGTAGGCTACCCCGTGATCGGAGAGAGCTTTAAGTTCTTGGCTTCTGGATGGAAAGGCCAACCTGAAAAGTTCTTCTTCGACCGAATAACCAAATTTTCCTCCCAAGTCTTCAAGACCTCCCTCTTTGGGGAGCAAGCTGCCATCTTCTGCGGTGCGGCTTGCAACAAATTCTTGTTCTCCAACGAGAACAAGCTTGTCGCTGTTTGGTATCCCAGCTCTATCAAAAAGATCTTCCCTTCTTCCACTGAAACTTCTAAAAAGAAGTTTAGAAAGTTGATTCCGAAGTTCATGAGGCCTGAGGTTTTGCAACGATACATCGGCATCATGGACACTAGTGCCCGTACACACTTTGCTGATGCTTGGGAAAATAAAAACCAAGTTCAAGCCTTCCCCCTCACTAACGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

180

Amino Acids

20.63

Weight (kDa)

9.57

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	122, 282, 287
AcsI	RAATTY	2 cut(s)	224, 299
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	3 cut(s)	149, 258, 259
AgsI	TTSAA	2 cut(s)	244, 515
AhlI	ACTAGT	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	4 cut(s)	159, 269, 325, 348
AluI	AGCT	4 cut(s)	159, 269, 325, 348
AoxI	GGCC	2 cut(s)	187, 425
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	2 cut(s)	224, 299
AxyI	CCTNAGG	1 cut(s)	429
BaeGI	GKGCMC	1 cut(s)	472
BbsI	GAAGAC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	3 cut(s)	62, 174, 281
BciT130I	CCWGG	1 cut(s)	126
BciVI	GTATCC	1 cut(s)	351
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	3 cut(s)	71, 108, 465
BfuI	GTATCC	1 cut(s)	351
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	2 cut(s)	270, 288
BlsI	GCNGC	2 cut(s)	271, 289
Bme1390I	CCNGG	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	2 cut(s)	462, 478
BpiI	GAAGAC	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 258, 259
Bse21I	CCTNAGG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	3 cut(s)	149, 258, 259
BseMII	CTCAG	2 cut(s)	60, 420
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	1 cut(s)	256
BseYI	CCCAGC	1 cut(s)	344
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	189, 427
BsiEI	CGRYCG	1 cut(s)	214
BslI	CCNNNNNNNGG	3 cut(s)	149, 258, 259
BsnI	GGCC	2 cut(s)	189, 427
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	3 cut(s)	95, 147, 360
BspACI	CCGC	3 cut(s)	122, 282, 287
BspANI	GGCC	2 cut(s)	189, 427
BspCNI	CTCAG	2 cut(s)	59, 421
BspHI	TCATGA	1 cut(s)	420
BssMI	GATC	3 cut(s)	95, 147, 360
Bst2UI	CCWGG	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	267, 292
BstDEI	CTNAG	2 cut(s)	46, 429
BstF5I	GGATG	1 cut(s)	185
BstKTI	GATC	3 cut(s)	98, 150, 363
BstMBI	GATC	3 cut(s)	95, 147, 360
BstMCI	CGRYCG	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	360
BstXI	CCANNNNNNTGG	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	360
Bsu36I	CCTNAGG	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	189, 427
BtsCI	GGATG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	2 cut(s)	267, 292
CciI	TCATGA	1 cut(s)	420
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	2 cut(s)	421, 457
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	2 cut(s)	46, 429
DpnI	GATC	3 cut(s)	97, 149, 362
DpnII	GATC	3 cut(s)	95, 147, 360
Eco147I	AGGCCT	1 cut(s)	427
Eco81I	CCTNAGG	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	124
FaeI	CATG	2 cut(s)	424, 460
FaiI	YATR	4 cut(s)	85, 87, 422, 458
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	2 cut(s)	420, 456
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	270, 288
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	270, 288
FspBI	CTAG	3 cut(s)	71, 108, 465
GluI	GCNGC	2 cut(s)	270, 288
GsaI	CCCAGC	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	189, 427
Hin1II	CATG	2 cut(s)	424, 460
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	1 cut(s)	409
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	2 cut(s)	152, 414
Hpy188III	TCNNGA	3 cut(s)	177, 244, 421
Hpy8I	GTNNAC	1 cut(s)	476
HpyAV	CCTTC	2 cut(s)	378, 529
HpyCH4V	TGCA	2 cut(s)	294, 439
HpyF3I	CTNAG	2 cut(s)	46, 429
Hsp92II	CATG	2 cut(s)	424, 460
Kzo9I	GATC	3 cut(s)	95, 147, 360
LmnI	GCTCC	2 cut(s)	7, 262
LpnPI	CCDG	7 cut(s)	22, 111, 138, 162, 207, 358, 441
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	2 cut(s)	462, 478
MaeI	CTAG	3 cut(s)	71, 108, 465
MalI	GATC	3 cut(s)	97, 149, 362
MboI	GATC	3 cut(s)	95, 147, 360
MboII	GAAGA	6 cut(s)	196, 199, 232, 268, 355, 363
MflI	RGATCY	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	3 cut(s)	101, 224, 299
MmeI	TCCRAC	1 cut(s)	336
MseI	TTAA	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
NdeII	GATC	3 cut(s)	95, 147, 360
NlaIII	CATG	2 cut(s)	424, 460
PagI	TCATGA	1 cut(s)	420
PceI	AGGCCT	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	409
PkrI	GCNGC	2 cut(s)	271, 289
Psp6I	CCWGG	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	360
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	270, 288
Sau3AI	GATC	3 cut(s)	95, 147, 360
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	9 cut(s)	47, 120, 161, 196, 251, 271, 327, 350, 435
SfaNI	GCATC	2 cut(s)	462, 478
SpeI	ACTAGT	1 cut(s)	464
Sse9I	AATT	3 cut(s)	101, 224, 299
SseBI	AGGCCT	1 cut(s)	427
SsiI	CCGC	3 cut(s)	122, 282, 287
SspMI	CTAG	3 cut(s)	71, 108, 465
StuI	AGGCCT	1 cut(s)	427
StyD4I	CCNGG	1 cut(s)	124
TaqI	TCGA	1 cut(s)	210
TaqII	GACCGA	1 cut(s)	228
TasI	AATT	3 cut(s)	101, 224, 299
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	409
TspRI	CASTG	1 cut(s)	382
XapI	RAATTY	2 cut(s)	224, 299
XspI	CTAG	3 cut(s)	71, 108, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.