Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Reverse (-)

50256380 .. 50275364

Gene Structure 18985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG242800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGACACCAAAGTCTTTTGTTTTGATCGCAAGCACAGATCCCAGTTCACCGGCAACAACCTCCCGCCGGGTAACGTGGGCTACCCGGTGATCGGAGACAGCTACGAGTTCGTCTCTTCAGCCCTGAAAGGCCACCCCGAGAAGTTCATCTTAGACCGGGTGAACAAGCACTCCTCCCAAGTCTTCAAGACCTCTTTGATTGGGGAGAGAGCTGCCTTCTTCTGCGGCACCGCTTGCAACAAGTTCTTGTTCTCCAATGAGAAAAAGCTTGTCCAAGTCTGGTTTTCGAGCTCTGTCAACAAGATCTTCCGTTCTTCCACCGAAACATCTGCCGCAGAGGACGCCAACAAGACGAGAAAGATGCTACACAACTTCTTGAAGCTCAACGCTCTGCAACGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

134

Amino Acids

15.25

Weight (kDa)

9.71

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	4 cut(s)	65, 225, 231, 333
AclWI	GGATC	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	342
AfiI	CCNNNNNNNGG	2 cut(s)	67, 92
AgsI	TTSAA	2 cut(s)	187, 379
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
AluBI	AGCT	5 cut(s)	102, 212, 268, 291, 382
AluI	AGCT	5 cut(s)	102, 212, 268, 291, 382
Alw21I	GWGCWC	1 cut(s)	293
Alw26I	GTCTC	2 cut(s)	90, 118
AlwI	GGATC	1 cut(s)	33
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	212
AsuC2I	CCSGG	3 cut(s)	69, 86, 158
AsuHPI	GGTGA	3 cut(s)	40, 100, 172
AvaI	CYCGRG	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	4 cut(s)	311, 343, 345, 377
BcnI	CCSGG	3 cut(s)	69, 86, 158
BcoDI	GTCTC	2 cut(s)	90, 118
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	3 cut(s)	213, 226, 333
BlsI	GCNGC	3 cut(s)	214, 227, 334
Bme1390I	CCNGG	3 cut(s)	69, 86, 158
BmeT110I	CYCGRG	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	69, 86, 158
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpuMI	CCSGG	3 cut(s)	69, 86, 158
BsaHI	GRCGYC	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 92
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	67, 92
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	199
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	293
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	4 cut(s)	51, 68, 86, 157
BslI	CCNNNNNNNGG	2 cut(s)	67, 92
BsmAI	GTCTC	2 cut(s)	90, 118
BsmBI	CGTCTC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	4 cut(s)	25, 38, 90, 303
BspACI	CCGC	4 cut(s)	65, 225, 231, 333
BspANI	GGCC	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	50
BssMI	GATC	4 cut(s)	25, 38, 90, 303
BssNI	GRCGYC	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	342
BstAPI	GCANNNNNTGC	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	32, 235
BstDEI	CTNAG	1 cut(s)	151
BstKTI	GATC	4 cut(s)	28, 41, 93, 306
BstMAI	GTCTC	2 cut(s)	90, 118
BstMBI	GATC	4 cut(s)	25, 38, 90, 303
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 341
BstSCI	CCNGG	3 cut(s)	67, 84, 156
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	2 cut(s)	38, 303
BstYI	RGATCY	2 cut(s)	38, 303
BsuRI	GGCC	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	32, 235
Cfr10I	RCCGGY	1 cut(s)	50
CseI	GACGC	1 cut(s)	350
CviJI	RGCY	8 cut(s)	81, 102, 122, 132, 212, 268, 291, 382
CviKI_1	RGCY	8 cut(s)	81, 102, 122, 132, 212, 268, 291, 382
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	4 cut(s)	27, 40, 92, 305
DpnII	GATC	4 cut(s)	25, 38, 90, 303
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	293
Esp3I	CGTCTC	1 cut(s)	118
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FauI	CCCGC	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	213, 226, 333
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	3 cut(s)	213, 226, 333
GluI	GCNGC	3 cut(s)	213, 226, 333
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	4 cut(s)	51, 68, 86, 157
HgaI	GACGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	266
HpaII	CCGG	4 cut(s)	51, 68, 86, 157
HphI	GGTGA	3 cut(s)	40, 100, 172
Hpy166II	GTNNAC	3 cut(s)	48, 163, 298
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	2 cut(s)	187, 376
Hpy8I	GTNNAC	3 cut(s)	48, 163, 298
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	237, 394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 341
HpyF3I	CTNAG	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	342
Kzo9I	GATC	4 cut(s)	25, 38, 90, 303
LpnPI	CCDG	7 cut(s)	56, 64, 81, 99, 137, 170, 265
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	351
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	4 cut(s)	27, 40, 92, 305
MboI	GATC	4 cut(s)	25, 38, 90, 303
MboII	GAAGA	5 cut(s)	108, 175, 211, 298, 306
MflI	RGATCY	2 cut(s)	38, 303
MhlI	GDGCHC	1 cut(s)	293
MnlI	CCTC	4 cut(s)	71, 184, 202, 331
MspI	CCGG	4 cut(s)	51, 68, 86, 157
MspR9I	CCNGG	3 cut(s)	69, 86, 158
MwoI	GCNNNNNNNGC	2 cut(s)	234, 341
NciI	CCSGG	3 cut(s)	69, 86, 158
NdeII	GATC	4 cut(s)	25, 38, 90, 303
NlaIV	GGNNCC	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	214, 227, 334
Psp124BI	GAGCTC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	229
PsuI	RGATCY	2 cut(s)	38, 303
SacI	GAGCTC	1 cut(s)	293
SatI	GCNGC	3 cut(s)	213, 226, 333
Sau3AI	GATC	4 cut(s)	25, 38, 90, 303
ScrFI	CCNGG	3 cut(s)	69, 86, 158
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	8 cut(s)	63, 78, 104, 194, 214, 270, 293, 384
SfaNI	GCATC	1 cut(s)	351
SsiI	CCGC	4 cut(s)	65, 225, 231, 333
SstI	GAGCTC	1 cut(s)	293
StyD4I	CCNGG	3 cut(s)	67, 84, 156
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	287
TauI	GCSGC	2 cut(s)	228, 335
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.