RchiOBHm_Chr5g0024681

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000192
Physical Location & Seq
Reverse (-)
18752292 .. 18752654
363 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30441

Sequence Viewer

Length: 363 bp
ATGCAGATACACTGGAATATGTATGCCACATATAAAAACCCGGAATACTTCCAGGATCCAGAGAAGGTTGACCCGTCAAGGTTCCACGGACAAGGACCAGCTCCTTATTCATATGTTCCTTTTGGAGGAGGACCTCGAATGTGTCCAGAAAAAGAATATGCTCGGTTCAAGATATTGGTTTTCATGCATAATGTTGTCACTAGATTTAAATGGGAGATGGTTTTTCCAGACGAGAAAATGATCATGGACCCGATTCTTGTTCCTACAAAAGGACTTCCGGCCTATTCGCCTTTTTCCTCATCAATCATCATCCTCATGATCCATCACAGACCAAAAGGAATGCATGCATGTTGGCCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

120

Amino Acids

14.08

Weight (kDa)

8.91

Isoelectric Point (pI)

68.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 90 6.3e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 50, 63, 313
AfiI CCNNNNNNNGG 2 cut(s) 125, 269
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
AlwI GGATC 3 cut(s) 50, 63, 313
AoxI GGCC 2 cut(s) 279, 353
AspS9I GGNCC 3 cut(s) 95, 131, 247
AsuC2I CCSGG 1 cut(s) 41
AvaII GGWCC 3 cut(s) 95, 131, 247
BamHI GGATCC 1 cut(s) 55
BccI CCATC 2 cut(s) 211, 330
BciT130I CCWGG 1 cut(s) 53
BclI TGATCA 1 cut(s) 240
BcnI CCSGG 1 cut(s) 41
BfaI CTAG 2 cut(s) 201, 361
Bme1390I CCNGG 2 cut(s) 41, 53
Bme18I GGWCC 3 cut(s) 95, 131, 247
BmgT120I GGNCC 3 cut(s) 95, 131, 247
BmiI GGNNCC 3 cut(s) 57, 83, 249
BmrFI CCNGG 2 cut(s) 41, 53
BpuMI CCSGG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 269
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 125, 269
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 141
BshFI GGCC 2 cut(s) 281, 355
BsiSI CCGG 2 cut(s) 41, 278
BslI CCNNNNNNNGG 2 cut(s) 125, 269
BsmI GAATGC 1 cut(s) 345
BsnI GGCC 2 cut(s) 281, 355
Bsp143I GATC 3 cut(s) 55, 240, 318
BspANI GGCC 2 cut(s) 281, 355
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 3 cut(s) 57, 83, 249
BspPI GGATC 3 cut(s) 50, 63, 313
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 3 cut(s) 55, 240, 318
Bst2UI CCWGG 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 85
BstENI CCTNNNNNAGG 2 cut(s) 123, 267
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 3 cut(s) 58, 243, 321
BstMBI GATC 3 cut(s) 55, 240, 318
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 2 cut(s) 347, 351
BstSCI CCNGG 2 cut(s) 39, 51
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 2 cut(s) 281, 355
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 315
Cfr13I GGNCC 3 cut(s) 95, 131, 247
CviAII CATG 5 cut(s) 184, 244, 316, 344, 348
CviJI RGCY 3 cut(s) 101, 281, 355
CviKI_1 RGCY 3 cut(s) 101, 281, 355
DpnI GATC 3 cut(s) 57, 242, 320
DpnII GATC 3 cut(s) 55, 240, 318
DraI TTTAAA 1 cut(s) 208
Eco47I GGWCC 3 cut(s) 95, 131, 247
EcoNI CCTNNNNNAGG 2 cut(s) 123, 267
EcoO109I RGGNCCY 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 51
EcoT22I ATGCAT 3 cut(s) 189, 345, 349
FaeI CATG 5 cut(s) 187, 247, 319, 347, 351
FatI CATG 5 cut(s) 183, 243, 315, 343, 347
FauNDI CATATG 1 cut(s) 112
FbaI TGATCA 1 cut(s) 240
FokI GGATG 1 cut(s) 296
FspBI CTAG 2 cut(s) 201, 361
HaeIII GGCC 2 cut(s) 281, 355
HapII CCGG 2 cut(s) 41, 278
Hin1II CATG 5 cut(s) 187, 247, 319, 347, 351
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 1 cut(s) 253
HpaII CCGG 2 cut(s) 41, 278
Hpy166II GTNNAC 1 cut(s) 70
Hpy188III TCNNGA 5 cut(s) 59, 146, 169, 227, 316
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 4 cut(s) 4, 187, 343, 347
Hsp92II CATG 5 cut(s) 187, 247, 319, 347, 351
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 3 cut(s) 55, 240, 318
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 8 cut(s) 38, 54, 65, 72, 111, 159, 240, 291
MaeI CTAG 2 cut(s) 201, 361
MaeIII GTNAC 1 cut(s) 196
MalI GATC 3 cut(s) 57, 242, 320
MboI GATC 3 cut(s) 55, 240, 318
MflI RGATCY 1 cut(s) 55
MnlI CCTC 5 cut(s) 119, 122, 144, 307, 323
Mph1103I ATGCAT 3 cut(s) 189, 345, 349
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 314
MspI CCGG 2 cut(s) 41, 278
MspR9I CCNGG 2 cut(s) 41, 53
Mva1269I GAATGC 1 cut(s) 345
MvaI CCWGG 1 cut(s) 53
NciI CCSGG 1 cut(s) 41
NdeI CATATG 1 cut(s) 112
NdeII GATC 3 cut(s) 55, 240, 318
NlaIII CATG 5 cut(s) 187, 247, 319, 347, 351
NlaIV GGNNCC 3 cut(s) 57, 83, 249
NmuCI GTSAC 1 cut(s) 196
NsiI ATGCAT 3 cut(s) 189, 345, 349
NspI RCATGY 2 cut(s) 347, 351
PaeI GCATGC 1 cut(s) 347
PagI TCATGA 1 cut(s) 315
PctI GAATGC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 253
PfoI TCCNGGA 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 3 cut(s) 57, 83, 249
PspPI GGNCC 3 cut(s) 95, 131, 247
PspPPI RGGWCCY 1 cut(s) 131
PsuI RGATCY 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 3 cut(s) 55, 240, 318
Sau96I GGNCC 3 cut(s) 95, 131, 247
ScrFI CCNGG 2 cut(s) 41, 53
SetI ASST 4 cut(s) 69, 83, 103, 136
SinI GGWCC 3 cut(s) 95, 131, 247
SmiI ATTTAAAT 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 314
SphI GCATGC 1 cut(s) 347
SspMI CTAG 2 cut(s) 201, 361
StyD4I CCNGG 2 cut(s) 39, 51
SwaI ATTTAAAT 1 cut(s) 208
TaqI TCGA 1 cut(s) 136
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 99, 172
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 1 cut(s) 17
VpaK11BI GGWCC 3 cut(s) 95, 131, 247
XagI CCTNNNNNAGG 2 cut(s) 123, 267
XceI RCATGY 2 cut(s) 347, 351
XspI CTAG 2 cut(s) 201, 361
Zsp2I ATGCAT 3 cut(s) 189, 345, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.