Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Reverse (-)

50243494 .. 50255689

Gene Structure 12196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG242600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCTCTTGACCTGTGATGAAGATGGAACATATCTGAAGGAATCCGATATCGCCGATACGATTCTTAAGCAAATGGAGATTGTAAATTCAAAAGCCCCAGGAGAGCCGTTGAAGTGGGAAGACCTTCAGAAGATGAAATACTCGTGGAATGTAGCTCAAGAAGTGCTGATGAGGATGGCACCACCTGTTCAAGGAAACTTCAGGGAAGCTTTAACCGATTTTGTCTTCAATGGTTTCACCATTCCGAAAGGGTGGAAGTTGTATTGGAGCGCAAACTTGACACACATGAGCGCCGATTGTTTCCCTGAACCGGAGAAATTCGACCCATCAAGATTTGAAGGAAAGGGACCCGCACCGTACACATTTATTCCGTTCGGCGGAGGCCCGAGAATGTGGGAGAAGGTTTTCCCTGATGAGAAGACCGCTGTTGCCCCTTTCCCTACCGCCGCCAAGGGACTTCCCATCCGCCTTTATCATCACCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

162

Amino Acids

18.49

Weight (kDa)

5.93

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	34 - 131	2.9e-23	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AciI	CCGC	6 cut(s)	351, 378, 423, 444, 447, 466
AcsI	RAATTY	2 cut(s)	85, 317
AcuI	CTGAAG	3 cut(s)	56, 110, 184
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	3 cut(s)	191, 310, 377
AflII	CTTAAG	1 cut(s)	65
AgsI	TTSAA	5 cut(s)	90, 112, 191, 229, 338
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	2 cut(s)	155, 209
AluI	AGCT	2 cut(s)	155, 209
Ama87I	CYCGRG	1 cut(s)	385
AoxI	GGCC	1 cut(s)	382
ApoI	RAATTY	2 cut(s)	85, 317
Asp700I	GAANNNNTTC	2 cut(s)	123, 404
AspLEI	GCGC	2 cut(s)	272, 293
AspS9I	GGNCC	2 cut(s)	347, 383
AsuHPI	GGTGA	2 cut(s)	229, 470
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	178
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BauI	CACGAG	1 cut(s)	142
BbsI	GAAGAC	3 cut(s)	126, 217, 425
BccI	CCATC	4 cut(s)	17, 169, 334, 470
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	294
BfrI	CTTAAG	1 cut(s)	65
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	347
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	347, 383
BmiI	GGNNCC	3 cut(s)	180, 348, 349
BmrFI	CCNGG	1 cut(s)	99
BpiI	GAAGAC	3 cut(s)	126, 217, 425
BpuEI	CTTGAG	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	97, 450
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 310, 377
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	97, 450
BseGI	GGATG	2 cut(s)	180, 462
BseLI	CCNNNNNNNGG	3 cut(s)	191, 310, 377
BshFI	GGCC	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	2 cut(s)	360, 468
BslI	CCNNNNNNNGG	3 cut(s)	191, 310, 377
BsmFI	GGGAC	2 cut(s)	360, 468
BsnI	GGCC	1 cut(s)	384
BsoBI	CYCGRG	1 cut(s)	385
BspACI	CCGC	6 cut(s)	351, 378, 423, 444, 447, 466
BspANI	GGCC	1 cut(s)	384
BspLI	GGNNCC	3 cut(s)	180, 348, 349
BspT107I	GGYRCC	1 cut(s)	178
BspTI	CTTAAG	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	97, 450
BssSI	CACGAG	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	357
BstAFI	CTTAAG	1 cut(s)	65
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	180, 462
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	2 cut(s)	272, 293
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstV2I	GAAGAC	3 cut(s)	126, 217, 425
BsuRI	GGCC	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	180, 462
CfoI	GCGC	2 cut(s)	272, 293
Cfr13I	GGNCC	2 cut(s)	347, 383
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	5 cut(s)	95, 106, 155, 209, 384
CviKI_1	RGCY	5 cut(s)	95, 106, 155, 209, 384
CviQI	GTAC	1 cut(s)	358
EciI	GGCGGA	2 cut(s)	393, 455
Eco130I	CCWWGG	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	347
Eco57I	CTGAAG	3 cut(s)	56, 110, 184
Eco88I	CYCGRG	1 cut(s)	385
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	1 cut(s)	289
FaiI	YATR	2 cut(s)	31, 287
FaqI	GGGAC	2 cut(s)	360, 468
FatI	CATG	1 cut(s)	285
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	2 cut(s)	187, 449
Fsp4HI	GCNGC	1 cut(s)	447
GlaI	GCGC	2 cut(s)	271, 292
GluI	GCNGC	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	1 cut(s)	311
HhaI	GCGC	2 cut(s)	272, 293
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	2 cut(s)	270, 291
HinP1I	GCGC	2 cut(s)	270, 291
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	2 cut(s)	41, 61
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	2 cut(s)	229, 470
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	4 cut(s)	36, 46, 129, 246
Hpy188III	TCNNGA	3 cut(s)	7, 158, 330
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	4 cut(s)	31, 134, 332, 394
HpyCH4III	ACNGT	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	2 cut(s)	270, 291
KflI	GGGWCCC	1 cut(s)	347
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	8 cut(s)	25, 84, 111, 187, 198, 318, 324, 423
MboII	GAAGA	5 cut(s)	32, 131, 142, 217, 430
MluCI	AATT	2 cut(s)	85, 317
MnlI	CCTC	2 cut(s)	165, 374
MroXI	GAANNNNTTC	2 cut(s)	123, 404
MseI	TTAA	2 cut(s)	66, 212
MspA1I	CMGCKG	1 cut(s)	425
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	3 cut(s)	180, 348, 349
PdmI	GAANNNNTTC	2 cut(s)	123, 404
PfeI	GAWTC	2 cut(s)	41, 61
PkrI	GCNGC	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	3 cut(s)	180, 348, 349
PspPI	GGNCC	2 cut(s)	347, 383
PspPPI	RGGWCCY	1 cut(s)	347
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SaqAI	TTAA	2 cut(s)	66, 212
SatI	GCNGC	1 cut(s)	447
Sau96I	GGNCC	2 cut(s)	347, 383
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	6 cut(s)	14, 126, 157, 187, 211, 405
SinI	GGWCC	1 cut(s)	347
SmlI	CTYRAG	2 cut(s)	65, 156
SmoI	CTYRAG	2 cut(s)	65, 156
Sse9I	AATT	2 cut(s)	85, 317
SsiI	CCGC	6 cut(s)	351, 378, 423, 444, 447, 466
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	321
TasI	AATT	2 cut(s)	85, 317
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	2 cut(s)	41, 61
Tru1I	TTAA	2 cut(s)	66, 212
Tru9I	TTAA	2 cut(s)	66, 212
TspDTI	ATGAA	2 cut(s)	33, 149
TspGWI	ACGGA	1 cut(s)	360
Vha464I	CTTAAG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	347
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	2 cut(s)	85, 317
XmnI	GAANNNNTTC	2 cut(s)	123, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.