Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Reverse (-)

32545738 .. 32546998

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGAACAAGCTTGTCCGAGCCTGGTTTCCCATCTGTGTCAACAAGATCTTCCCTTCTTCTACCGAAACCTCCGCCGCAGAGGAGTCCAACAAGGCAACAAGATGAAAAGGATGCTACCCAATTTCTTGAAGCTCGACGCTCTGCAACGGAAACCGTTCAGTTTAGTGAATGCCGCACCGGAACCATATCGTTGCCCATCGACTTGCCAGGAACTCCGCTTAATAAAGCCATCGGGGCCGTCAACTTGATCAGGAAGGATTTGTACAAGATGATCAAGCAGAGGAAGGTCGACGTAGCAGAGGGCAATGCATCCCCCACACAGGACATGTTATCACAAATGCTCTTGACCTGGGATGAAGATGGATCATATCAGAAGGAATCCGAAATCGCCGTTAAGATTCTTGGTATGTTGGTTACTGGATTCGACACAGTTAGTGCTGCACTGACTTTTATTGTCAAGTATCTTGCCGACTTTCCTCGTATCTATGACGCAGTTTACAAAGAGCAAACGGAGATTGTAAATTCAAAAACCATTGGGAAGCCGTTGAAATGGGAAGACCTTCAGAAGATGAAATACTCGTGGAATGTAGCTCAAGAAGTGACAAGGATGACACCACCTGTTCAAGGAAACTTCAGGGAAGCTTTAACAGATTTTGTTTACCATGGTTTCACCATTCCAAAAGGGTGGAGGTTGTTTTTTGGAGTGCAAACTGGACACACAAGAACGCCGATTGTTTCCCTGAGCCGGAGAAGTTTGACCCGTCAAGATTCGAAGGAAAGGGACCAGCACCTTACACATTTGTTCCATTTGGTGGAGGACCTAGAATGTGTCCAGGGAATCAGTACGCTCGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

286

Amino Acids

32.24

Weight (kDa)

8.74

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	35 - 236	5.4e-24	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	814
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	4 cut(s)	74, 77, 175, 218
AclWI	GGATC	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	2 cut(s)	548, 619
AfaI	GTAC	2 cut(s)	266, 847
AfiI	CCNNNNNNNGG	4 cut(s)	322, 626, 747, 814
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	4 cut(s)	131, 528, 550, 626
AjnI	CCWGG	4 cut(s)	22, 208, 350, 834
AluBI	AGCT	4 cut(s)	12, 134, 593, 644
AluI	AGCT	4 cut(s)	12, 134, 593, 644
AlwI	GGATC	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	523
Asp700I	GAANNNNTTC	2 cut(s)	156, 561
AspS9I	GGNCC	3 cut(s)	237, 784, 820
AsuHPI	GGTGA	1 cut(s)	664
AsuII	TTCGAA	1 cut(s)	773
AvaI	CYCGRG	1 cut(s)	851
AvaII	GGWCC	2 cut(s)	784, 820
BarI	GAAGNNNNNNTAC	4 cut(s)	248, 280, 560, 592
BauI	CACGAG	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	4 cut(s)	40, 206, 239, 356
BceAI	ACGGC	3 cut(s)	224, 377, 529
BciT130I	CCWGG	4 cut(s)	24, 210, 352, 836
BclI	TGATCA	2 cut(s)	249, 273
BfaI	CTAG	1 cut(s)	824
BglI	GCCNNNNNGGC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	47
BisI	GCNGC	3 cut(s)	77, 175, 441
BlsI	GCNGC	3 cut(s)	78, 176, 442
Bme1390I	CCNGG	4 cut(s)	24, 210, 352, 836
Bme18I	GGWCC	2 cut(s)	784, 820
BmeT110I	CYCGRG	1 cut(s)	851
BmgT120I	GGNCC	3 cut(s)	237, 784, 820
BmiI	GGNNCC	3 cut(s)	184, 238, 785
BmrFI	CCNGG	4 cut(s)	24, 210, 352, 836
BmsI	GCATC	2 cut(s)	103, 320
BpiI	GAAGAC	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	743
Bpu14I	TTCGAA	1 cut(s)	773
BpuEI	CTTGAG	1 cut(s)	579
BsaJI	CCNNGG	3 cut(s)	351, 664, 835
BsaWI	WCCGGW	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	4 cut(s)	322, 626, 747, 814
Bse1I	ACTGG	2 cut(s)	424, 718
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	4 cut(s)	24, 210, 352, 836
BseDI	CCNNGG	3 cut(s)	351, 664, 835
BseGI	GGATG	4 cut(s)	118, 311, 361, 615
BseLI	CCNNNNNNNGG	4 cut(s)	322, 626, 747, 814
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	734
BseNI	ACTGG	2 cut(s)	424, 718
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	427
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	2 cut(s)	180, 748
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	4 cut(s)	322, 626, 747, 814
BsmFI	GGGAC	1 cut(s)	797
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	851
Bsp119I	TTCGAA	1 cut(s)	773
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	47, 249, 273, 365
Bsp19I	CCATGG	1 cut(s)	664
BspACI	CCGC	4 cut(s)	74, 77, 175, 218
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	735
BspLI	GGNNCC	3 cut(s)	184, 238, 785
BspPI	GGATC	1 cut(s)	373
BspT104I	TTCGAA	1 cut(s)	773
BsrDI	GCAATG	1 cut(s)	313
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	424, 718
BssECI	CCNNGG	3 cut(s)	351, 664, 835
BssMI	GATC	4 cut(s)	47, 249, 273, 365
BssSI	CACGAG	1 cut(s)	580
BssT1I	CCWWGG	1 cut(s)	664
Bst2BI	CACGAG	1 cut(s)	580
Bst2UI	CCWGG	4 cut(s)	24, 210, 352, 836
Bst4CI	ACNGT	2 cut(s)	157, 433
BstAUI	TGTACA	1 cut(s)	264
BstBI	TTCGAA	1 cut(s)	773
BstDEI	CTNAG	1 cut(s)	743
BstDSI	CCRYGG	1 cut(s)	664
BstENI	CCTNNNNNAGG	1 cut(s)	624
BstF5I	GGATG	4 cut(s)	118, 311, 361, 615
BstKTI	GATC	4 cut(s)	50, 252, 276, 368
BstMBI	GATC	4 cut(s)	47, 249, 273, 365
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	4 cut(s)	24, 210, 352, 836
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	4 cut(s)	22, 208, 350, 834
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	1 cut(s)	47
BstXI	CCANNNNNNTGG	1 cut(s)	687
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	664
BtsCI	GGATG	4 cut(s)	118, 311, 361, 615
BtsIMutI	CAGTG	1 cut(s)	443
Cfr13I	GGNCC	3 cut(s)	237, 784, 820
CseI	GACGC	2 cut(s)	147, 500
Csp6I	GTAC	2 cut(s)	265, 846
CviAII	CATG	2 cut(s)	328, 665
CviJI	RGCY	9 cut(s)	12, 22, 134, 230, 239, 544, 593, 644, 747
CviKI_1	RGCY	9 cut(s)	12, 22, 134, 230, 239, 544, 593, 644, 747
CviQI	GTAC	2 cut(s)	265, 846
DdeI	CTNAG	1 cut(s)	743
DpnI	GATC	4 cut(s)	49, 251, 275, 367
DpnII	GATC	4 cut(s)	47, 249, 273, 365
EciI	GGCGGA	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	664
Eco47I	GGWCC	2 cut(s)	784, 820
Eco57I	CTGAAG	2 cut(s)	548, 619
Eco88I	CYCGRG	1 cut(s)	851
EcoNI	CCTNNNNNAGG	1 cut(s)	624
EcoO109I	RGGNCCY	1 cut(s)	820
EcoRII	CCWGG	4 cut(s)	22, 208, 350, 834
EcoT14I	CCWWGG	1 cut(s)	664
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	664
FaeI	CATG	2 cut(s)	331, 668
FaiI	YATR	6 cut(s)	188, 329, 370, 410, 489, 666
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	2 cut(s)	327, 664
FbaI	TGATCA	2 cut(s)	249, 273
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	3 cut(s)	77, 175, 441
FokI	GGATG	4 cut(s)	125, 298, 368, 622
Fsp4HI	GCNGC	3 cut(s)	77, 175, 441
FspBI	CTAG	1 cut(s)	824
GluI	GCNGC	3 cut(s)	77, 175, 441
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	2 cut(s)	180, 748
HgaI	GACGC	2 cut(s)	147, 500
Hin1II	CATG	2 cut(s)	331, 668
HincII	GTYRAC	3 cut(s)	42, 244, 292
HindII	GTYRAC	3 cut(s)	42, 244, 292
HindIII	AAGCTT	2 cut(s)	10, 642
HinfI	GANTC	6 cut(s)	85, 380, 400, 423, 770, 840
HpaII	CCGG	2 cut(s)	180, 748
HphI	GGTGA	1 cut(s)	664
Hpy166II	GTNNAC	5 cut(s)	42, 244, 292, 499, 661
Hpy188I	TCNGA	4 cut(s)	19, 375, 385, 567
Hpy188III	TCNNGA	5 cut(s)	128, 253, 346, 596, 767
Hpy8I	GTNNAC	5 cut(s)	42, 244, 292, 499, 661
Hpy99I	CGWCG	2 cut(s)	141, 296
HpyAV	CCTTC	6 cut(s)	65, 250, 280, 370, 572, 769
HpyCH4III	ACNGT	2 cut(s)	157, 433
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	4 cut(s)	146, 311, 443, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	743
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	331, 668
Ksp22I	TGATCA	2 cut(s)	249, 273
Kzo9I	GATC	4 cut(s)	47, 249, 273, 365
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	2 cut(s)	103, 320
MaeI	CTAG	1 cut(s)	824
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	2 cut(s)	415, 601
MalI	GATC	4 cut(s)	49, 251, 275, 367
MboI	GATC	4 cut(s)	47, 249, 273, 365
MboII	GAAGA	5 cut(s)	42, 50, 371, 569, 580
MflI	RGATCY	1 cut(s)	47
MluCI	AATT	2 cut(s)	122, 523
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	7 cut(s)	75, 81, 276, 295, 489, 684, 811
Mph1103I	ATGCAT	1 cut(s)	313
MroXI	GAANNNNTTC	2 cut(s)	156, 561
MseI	TTAA	3 cut(s)	222, 396, 647
MspI	CCGG	2 cut(s)	180, 748
MspR9I	CCNGG	4 cut(s)	24, 210, 352, 836
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	4 cut(s)	24, 210, 352, 836
MwoI	GCNNNNNNNGC	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	664
NdeII	GATC	4 cut(s)	47, 249, 273, 365
NlaIII	CATG	2 cut(s)	331, 668
NlaIV	GGNNCC	3 cut(s)	184, 238, 785
NmuCI	GTSAC	1 cut(s)	601
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	1 cut(s)	331
NspV	TTCGAA	1 cut(s)	773
PciI	ACATGT	1 cut(s)	327
PctI	GAATGC	1 cut(s)	176
PdmI	GAANNNNTTC	2 cut(s)	156, 561
PfeI	GAWTC	5 cut(s)	380, 400, 423, 770, 840
PflMI	CCANNNNNTGG	1 cut(s)	814
PkrI	GCNGC	3 cut(s)	78, 176, 442
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	820
PscI	ACATGT	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	820
Psp6I	CCWGG	4 cut(s)	22, 208, 350, 834
PspGI	CCWGG	4 cut(s)	22, 208, 350, 834
PspN4I	GGNNCC	3 cut(s)	184, 238, 785
PspPI	GGNCC	3 cut(s)	237, 784, 820
PspPPI	RGGWCCY	1 cut(s)	820
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	2 cut(s)	266, 847
RsaNI	GTAC	2 cut(s)	265, 846
SalI	GTCGAC	1 cut(s)	290
SaqAI	TTAA	3 cut(s)	222, 396, 647
SatI	GCNGC	3 cut(s)	77, 175, 441
Sau3AI	GATC	4 cut(s)	47, 249, 273, 365
Sau96I	GGNCC	3 cut(s)	237, 784, 820
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	4 cut(s)	24, 210, 352, 836
SfaNI	GCATC	2 cut(s)	103, 320
SfuI	TTCGAA	1 cut(s)	773
SinI	GGWCC	2 cut(s)	784, 820
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
Sse9I	AATT	2 cut(s)	122, 523
SsiI	CCGC	4 cut(s)	74, 77, 175, 218
SspMI	CTAG	1 cut(s)	824
StyD4I	CCNGG	4 cut(s)	22, 208, 350, 834
StyI	CCWWGG	1 cut(s)	664
TaaI	ACNGT	2 cut(s)	157, 433
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	5 cut(s)	136, 201, 291, 426, 773
TasI	AATT	2 cut(s)	122, 523
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	2 cut(s)	79, 177
TfiI	GAWTC	5 cut(s)	380, 400, 423, 770, 840
Tru1I	TTAA	3 cut(s)	222, 396, 647
Tru9I	TTAA	3 cut(s)	222, 396, 647
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	3 cut(s)	120, 372, 587
TspGWI	ACGGA	2 cut(s)	164, 527
TspRI	CASTG	1 cut(s)	450
Van91I	CCANNNNNTGG	1 cut(s)	814
VpaK11BI	GGWCC	2 cut(s)	784, 820
XagI	CCTNNNNNAGG	1 cut(s)	624
XapI	RAATTY	1 cut(s)	523
XceI	RCATGY	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	291
XmnI	GAANNNNTTC	2 cut(s)	156, 561
XspI	CTAG	1 cut(s)	824
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.