Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Forward (+)

26520909 .. 26521593

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g24900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAAATCTACACCTTGGCGATCGCTGCATGTTTGTTTCTTAGCCTCGAGGACCAAAAGGACATAGGCAAACTAGGCCACTCTTTGTATCTGGCTAACGCCGGAGTCATATCGATGCCTATTGACTTTCCTGGGACCCCGCTTCGCAAAGCCATCGAGGCCTCCAACCTCATCAATGGGAAGTTGACGGAGATAATAAAGCAAAGGAAGGCTGATTTGGCTGATGGCAAGGCTTCTCTGACGCAAGACATTTTGTCACACATGCTAATGACATGCGATGAGGATGGAACCTACATGAAGGAATTGGATATCAGTACTAAGATTATGGGGCTGTTAATTGGTGGTTATGAAGCTGCCGGCGCTGTTTGCACCCTCATTGTCAAGTTTCTTGCTGAACTCCCTCACATCTACGATGCAGTCTACAAGGAGCAAATGGAGATTGCAAATTTGAAAGCCCCAGAAGAGTTGTTGAACTGGGATGACATTCAGAAGATGAAGTACTCGTGGAATGTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

173

Amino Acids

19.03

Weight (kDa)

5.05

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	420
AciI	CCGC	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	445
AfaI	GTAC	2 cut(s)	316, 500
AgsI	TTSAA	2 cut(s)	451, 472
AhdI	GACNNNNNGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	2 cut(s)	353, 515
AluI	AGCT	2 cut(s)	353, 515
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	2 cut(s)	76, 159
ApeKI	GCWGC	2 cut(s)	26, 353
ApoI	RAATTY	1 cut(s)	445
AsiSI	GCGATCGC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	52, 135
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	2 cut(s)	52, 135
BarI	GAAGNNNNNNTAC	2 cut(s)	482, 514
BauI	CACGAG	1 cut(s)	502
BbvI	GCAGC	2 cut(s)	13, 340
BccI	CCATC	3 cut(s)	161, 218, 278
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	1 cut(s)	132
BfaI	CTAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	363
BglI	GCCNNNNNGGC	1 cut(s)	158
BisI	GCNGC	2 cut(s)	27, 354
BlsI	GCNGC	2 cut(s)	28, 355
BmcAI	AGTACT	2 cut(s)	316, 500
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	2 cut(s)	52, 135
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	52, 135
BmiI	GGNNCC	3 cut(s)	136, 137, 289
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	484
BmsI	GCATC	2 cut(s)	105, 403
BmuI	ACTGGG	1 cut(s)	484
Bsa29I	ATCGAT	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	15, 131
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	132
BseCI	ATCGAT	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	15, 131
BseGI	GGATG	2 cut(s)	289, 484
BseNI	ACTGG	1 cut(s)	479
BseXI	GCAGC	2 cut(s)	13, 340
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	78, 161
BshVI	ATCGAT	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	102, 357
BslFI	GGGAC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	78, 161
BsoBI	CYCGRG	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	2 cut(s)	78, 161
BspDI	ATCGAT	1 cut(s)	113
BspLI	GGNNCC	3 cut(s)	136, 137, 289
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	479
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	15, 131
BssMI	GATC	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	502
BssT1I	CCWWGG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	502
Bst2UI	CCWGG	1 cut(s)	132
Bst6I	CTCTTC	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	41, 318
BstF5I	GGATG	2 cut(s)	289, 484
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 75, 158, 218, 359, 366
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	3 cut(s)	33, 265, 276
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	13, 340
Bsu15I	ATCGAT	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	78, 161
BsuTUI	ATCGAT	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	289, 484
Cac8I	GCNNGC	1 cut(s)	358
CfoI	GCGC	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	52, 135
ClaI	ATCGAT	1 cut(s)	113
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	315, 499
CviAII	CATG	4 cut(s)	30, 262, 273, 295
CviQI	GTAC	2 cut(s)	315, 499
DdeI	CTNAG	2 cut(s)	41, 318
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
DriI	GACNNNNNGTC	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	456
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	15
Eco147I	AGGCCT	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	52, 135
Eco88I	CYCGRG	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	4 cut(s)	33, 265, 276, 298
FaiI	YATR	8 cut(s)	31, 65, 110, 263, 274, 296, 326, 348
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	4 cut(s)	29, 261, 272, 294
FauI	CCCGC	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	27, 354
FokI	GGATG	2 cut(s)	296, 491
Fsp4HI	GCNGC	2 cut(s)	27, 354
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	2 cut(s)	27, 354
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	78, 161
HapII	CCGG	2 cut(s)	102, 357
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	4 cut(s)	33, 265, 276, 298
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	1 cut(s)	105
HpaII	CCGG	2 cut(s)	102, 357
Hpy166II	GTNNAC	2 cut(s)	186, 421
Hpy188I	TCNGA	2 cut(s)	240, 489
Hpy8I	GTNNAC	2 cut(s)	186, 421
HpyAV	CCTTC	2 cut(s)	202, 292
HpyCH4V	TGCA	4 cut(s)	29, 369, 416, 443
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 75, 158, 218, 359, 366
HpyF3I	CTNAG	2 cut(s)	41, 318
Hsp92II	CATG	4 cut(s)	33, 265, 276, 298
HspAI	GCGC	1 cut(s)	360
KflI	GGGWCCC	1 cut(s)	135
KroI	GCCGGC	1 cut(s)	356
KroNI	GCCGGC	1 cut(s)	358
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	1 cut(s)	427
LpnPI	CCDG	7 cut(s)	77, 115, 117, 144, 370, 460, 471
Lsp1109I	GCAGC	2 cut(s)	13, 340
LweI	GCATC	2 cut(s)	105, 403
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	2 cut(s)	473, 502
MluCI	AATT	3 cut(s)	302, 336, 445
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	8 cut(s)	43, 56, 151, 172, 179, 274, 383, 411
MroNI	GCCGGC	1 cut(s)	356
MseI	TTAA	2 cut(s)	335, 517
MslI	CAYNNNNRTG	2 cut(s)	113, 266
MspI	CCGG	2 cut(s)	102, 357
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	6 cut(s)	26, 75, 158, 218, 359, 366
NaeI	GCCGGC	1 cut(s)	358
NdeII	GATC	1 cut(s)	21
NgoMIV	GCCGGC	1 cut(s)	356
NlaIII	CATG	4 cut(s)	33, 265, 276, 298
NlaIV	GGNNCC	3 cut(s)	136, 137, 289
NmuCI	GTSAC	1 cut(s)	255
NspI	RCATGY	3 cut(s)	33, 265, 276
PaeR7I	CTCGAG	1 cut(s)	47
PceI	AGGCCT	1 cut(s)	161
PdiI	GCCGGC	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	28, 355
Ple19I	CGATCG	1 cut(s)	24
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	3 cut(s)	136, 137, 289
PspPI	GGNCC	2 cut(s)	52, 135
PspPPI	RGGWCCY	1 cut(s)	135
PspXI	VCTCGAGB	1 cut(s)	47
PvuI	CGATCG	1 cut(s)	24
RgaI	GCGATCGC	1 cut(s)	24
RsaI	GTAC	2 cut(s)	316, 500
RsaNI	GTAC	2 cut(s)	315, 499
RseI	CAYNNNNRTG	2 cut(s)	113, 266
SaqAI	TTAA	2 cut(s)	335, 517
SatI	GCNGC	2 cut(s)	27, 354
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	2 cut(s)	52, 135
ScaI	AGTACT	2 cut(s)	316, 500
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	5 cut(s)	17, 171, 293, 355, 517
SfaAI	GCGATCGC	1 cut(s)	24
SfaNI	GCATC	2 cut(s)	105, 403
Sfr274I	CTCGAG	1 cut(s)	47
SgfI	GCGATCGC	1 cut(s)	24
SinI	GGWCC	2 cut(s)	52, 135
SlaI	CTCGAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	2 cut(s)	113, 266
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	3 cut(s)	302, 336, 445
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	15
TaqI	TCGA	3 cut(s)	48, 113, 156
TasI	AATT	3 cut(s)	302, 336, 445
TatI	WGTACW	2 cut(s)	314, 498
Tru1I	TTAA	2 cut(s)	335, 517
Tru9I	TTAA	2 cut(s)	335, 517
TseFI	GTSAC	1 cut(s)	255
TseI	GCWGC	2 cut(s)	26, 353
Tsp45I	GTSAC	1 cut(s)	255
TspDTI	ATGAA	4 cut(s)	17, 311, 363, 509
TspGWI	ACGGA	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	52, 135
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	3 cut(s)	33, 265, 276
XhoI	CTCGAG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	420
XspI	CTAG	1 cut(s)	74
ZrmI	AGTACT	2 cut(s)	316, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.