Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Forward (+)

20877682 .. 20880153

Gene Structure 2472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGGAAATATGAGATCTTGCAAAAGGGTTTATAAGGGTTTAGACCACTTCATCCATTACCAATTGGTTTTGGATGTGAAGCCTAAATTATTTTATAATAGGCTAGATGAGAAGTTTGATTCTCCGCTTGGTTTGCTTAACTATTTTAGAGTAGCAAATGGAGATTGTAAATTCAAAAGCCATAGGGGAGCCGTTGATATGGGAAGACCTTCGAAGATGGATGAAATACTCGTGGAATGTAGTTCAAGAAGTGCGAGGATGACACCACCTGTTCAAGGAAACTTCAGGGAAGCTTTAACCGATTTTGTCTTTAATGGTTTCACCATTCCAAAAGGGTGGAAGTTGTACCGGAGCGCAAACTGGACACACAAGAGCGCCGATTGTTTCCCTGAACCGGAGAAATTCGATCCTTCAAGATTCGAAGGAAAGGGACCGGCACCTTACACATTTATTCCGTTCGGCGGAGGCTCGAGAATGTGTCCAGGGAATGAGTACGCTCGGGTGGTGATATTGGTGTTCATGCACCACTTGGTCACAAGGTTCAAGTGGGAGAAGGTTTTTCCCGATGAGAAGACCATTGTTGTCGCTCTCCCCACCCCCGCCAAGGGACTTCCCATCCGCCTTTTTCGTCACCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

213

Amino Acids

24.55

Weight (kDa)

9.66

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	86 - 185	7e-27	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	33, 96
AccB1I	GGYRCC	1 cut(s)	436
AciI	CCGC	4 cut(s)	125, 462, 600, 619
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	2 cut(s)	170, 401
AcuI	CTGAAG	1 cut(s)	268
AfaI	GTAC	2 cut(s)	347, 494
AfiI	CCNNNNNNNGG	5 cut(s)	275, 394, 461, 604, 605
AgsI	TTSAA	5 cut(s)	175, 246, 275, 414, 544
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
AlwI	GGATC	1 cut(s)	401
Ama87I	CYCGRG	2 cut(s)	469, 498
ApoI	RAATTY	2 cut(s)	170, 401
Asp700I	GAANNNNTTC	1 cut(s)	208
AspLEI	GCGC	2 cut(s)	356, 377
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	3 cut(s)	313, 517, 623
AsuII	TTCGAA	2 cut(s)	212, 420
AvaI	CYCGRG	2 cut(s)	469, 498
AvaII	GGWCC	1 cut(s)	431
BanI	GGYRCC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	230
BbsI	GAAGAC	2 cut(s)	211, 578
BccI	CCATC	2 cut(s)	211, 623
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	483
BfaI	CTAG	1 cut(s)	104
BfoI	RGCGCY	1 cut(s)	378
BglII	AGATCT	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	2 cut(s)	469, 498
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	3 cut(s)	190, 432, 438
BmrFI	CCNGG	1 cut(s)	483
BpiI	GAAGAC	2 cut(s)	211, 578
Bpu14I	TTCGAA	2 cut(s)	212, 420
BsaJI	CCNNGG	2 cut(s)	482, 603
BsaWI	WCCGGW	2 cut(s)	348, 394
Bsc4I	CCNNNNNNNGG	5 cut(s)	275, 394, 461, 604, 605
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	482, 603
BseGI	GGATG	5 cut(s)	51, 79, 226, 264, 615
BseLI	CCNNNNNNNGG	5 cut(s)	275, 394, 461, 604, 605
BseNI	ACTGG	1 cut(s)	365
BshNI	GGYRCC	1 cut(s)	436
BsiHKCI	CYCGRG	2 cut(s)	469, 498
BsiSI	CCGG	3 cut(s)	349, 395, 434
BslFI	GGGAC	2 cut(s)	444, 621
BslI	CCNNNNNNNGG	5 cut(s)	275, 394, 461, 604, 605
BsmFI	GGGAC	2 cut(s)	444, 621
BsoBI	CYCGRG	2 cut(s)	469, 498
Bsp119I	TTCGAA	2 cut(s)	212, 420
Bsp143I	GATC	2 cut(s)	14, 406
BspACI	CCGC	4 cut(s)	125, 462, 600, 619
BspLI	GGNNCC	3 cut(s)	190, 432, 438
BspPI	GGATC	1 cut(s)	401
BspT104I	TTCGAA	2 cut(s)	212, 420
BspT107I	GGYRCC	1 cut(s)	436
BsrFI	RCCGGY	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	365
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	482, 603
BssMI	GATC	2 cut(s)	14, 406
BssSI	CACGAG	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	603
Bst2BI	CACGAG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	483
BstBI	TTCGAA	2 cut(s)	212, 420
BstENI	CCTNNNNNAGG	1 cut(s)	273
BstF5I	GGATG	5 cut(s)	51, 79, 226, 264, 615
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	2 cut(s)	356, 377
BstKTI	GATC	2 cut(s)	17, 409
BstMBI	GATC	2 cut(s)	14, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstV2I	GAAGAC	2 cut(s)	211, 578
BstX2I	RGATCY	1 cut(s)	14
BstXI	CCANNNNNNTGG	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	14
BtsCI	GGATG	5 cut(s)	51, 79, 226, 264, 615
CfoI	GCGC	2 cut(s)	356, 377
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	346, 493
CviAII	CATG	1 cut(s)	520
CviJI	RGCY	6 cut(s)	82, 103, 180, 191, 293, 468
CviKI_1	RGCY	6 cut(s)	82, 103, 180, 191, 293, 468
CviQI	GTAC	2 cut(s)	346, 493
DpnI	GATC	2 cut(s)	16, 408
DpnII	GATC	2 cut(s)	14, 406
EciI	GGCGGA	2 cut(s)	477, 608
Eco130I	CCWWGG	1 cut(s)	603
Eco47I	GGWCC	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	268
Eco88I	CYCGRG	2 cut(s)	469, 498
EcoNI	CCTNNNNNAGG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	1 cut(s)	523
FaiI	YATR	6 cut(s)	11, 33, 96, 183, 200, 521
FaqI	GGGAC	2 cut(s)	444, 621
FatI	CATG	1 cut(s)	519
FauI	CCCGC	1 cut(s)	607
FokI	GGATG	5 cut(s)	38, 86, 233, 271, 602
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	2 cut(s)	355, 376
HaeII	RGCGCY	1 cut(s)	378
HapII	CCGG	3 cut(s)	349, 395, 434
HhaI	GCGC	2 cut(s)	356, 377
Hin1II	CATG	1 cut(s)	523
Hin6I	GCGC	2 cut(s)	354, 375
HinP1I	GCGC	2 cut(s)	354, 375
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	2 cut(s)	119, 417
HpaII	CCGG	3 cut(s)	349, 395, 434
HphI	GGTGA	3 cut(s)	313, 517, 623
Hpy188III	TCNNGA	4 cut(s)	246, 414, 471, 563
HpyAV	CCTTC	4 cut(s)	219, 416, 420, 547
HpyCH4V	TGCA	2 cut(s)	21, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
Hsp92II	CATG	1 cut(s)	523
HspAI	GCGC	2 cut(s)	354, 375
Kzo9I	GATC	2 cut(s)	14, 406
LmnI	GCTCC	2 cut(s)	188, 351
LpnPI	CCDG	9 cut(s)	271, 282, 346, 362, 402, 408, 447, 468, 495
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	532, 629
MalI	GATC	2 cut(s)	16, 408
MboI	GATC	2 cut(s)	14, 406
MboII	GAAGA	3 cut(s)	216, 226, 583
MfeI	CAATTG	1 cut(s)	62
MflI	RGATCY	1 cut(s)	14
MluCI	AATT	4 cut(s)	62, 86, 170, 401
MnlI	CCTC	2 cut(s)	249, 458
MroXI	GAANNNNTTC	1 cut(s)	208
MseI	TTAA	3 cut(s)	138, 296, 312
MspI	CCGG	3 cut(s)	349, 395, 434
MspR9I	CCNGG	1 cut(s)	483
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	1 cut(s)	133
NdeII	GATC	2 cut(s)	14, 406
NlaIII	CATG	1 cut(s)	523
NlaIV	GGNNCC	3 cut(s)	190, 432, 438
NmuCI	GTSAC	2 cut(s)	532, 629
NspV	TTCGAA	2 cut(s)	212, 420
PaeR7I	CTCGAG	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	119, 417
PsiI	TTATAA	2 cut(s)	33, 96
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	3 cut(s)	190, 432, 438
PspPI	GGNCC	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	2 cut(s)	347, 494
RsaNI	GTAC	2 cut(s)	346, 493
SaqAI	TTAA	3 cut(s)	138, 296, 312
Sau3AI	GATC	2 cut(s)	14, 406
Sau96I	GGNCC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	483
SetI	ASST	6 cut(s)	211, 271, 295, 442, 542, 558
Sfr274I	CTCGAG	1 cut(s)	469
SfuI	TTCGAA	2 cut(s)	212, 420
SinI	GGWCC	1 cut(s)	431
SlaI	CTCGAG	1 cut(s)	469
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	4 cut(s)	62, 86, 170, 401
SsiI	CCGC	4 cut(s)	125, 462, 600, 619
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	603
TaqI	TCGA	4 cut(s)	212, 405, 420, 470
TasI	AATT	4 cut(s)	62, 86, 170, 401
TfiI	GAWTC	2 cut(s)	119, 417
Tru1I	TTAA	3 cut(s)	138, 296, 312
Tru9I	TTAA	3 cut(s)	138, 296, 312
TseFI	GTSAC	2 cut(s)	532, 629
Tsp45I	GTSAC	2 cut(s)	532, 629
TspDTI	ATGAA	3 cut(s)	40, 237, 508
TspGWI	ACGGA	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	273
XapI	RAATTY	2 cut(s)	170, 401
XhoI	CTCGAG	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	208
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.