Rmu_co8235405.1_g000001

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8235405.1
OG0000192
Physical Location & Seq
Forward (+)
1 .. 743
743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8235405.1_g000001.1.cds

Sequence Viewer

Length: 556 bp
ggctactgctatgactttcttcatgaagtatgtgggagaaaggcctgacatctatgccaaggtcctagcagaacaaatggaggtggcagagtcaaagaagccaggacaacttttggaatgggatgacttgaacaagatgaagtactcctggaatgtcatatatgaggtgatgaggttcaccccgccacttcagggaacattccgagaggccttgaccgattttgaatatgccggttacaccattcctaagggctggaaggtatattggactgttagcacaacaaacatgaacccggactacttccccaacccggaaaagttcgacccctcgagatacgatgatgtaagcgcattcccaccatacacatttgtcccatttggaggaggaccaagaatgtgccctggaaaagagtacgctaggcttgcaatactcacttttgttcacaatgtggtcaagaggttcaagtgggaagtggtatttcccaaagaaaagatcacgggtgatatgatgccaacaccagaaaaaggacttcccattcgccttacacgtcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

184

Amino Acids

21.46

Weight (kDa)

8.53

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 174
AdeI CACNNNGTG 1 cut(s) 449
AfaI GTAC 2 cut(s) 144, 414
AfiI CCNNNNNNNGG 4 cut(s) 192, 311, 381, 525
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 3 cut(s) 131, 225, 464
AjiI CACGTC 1 cut(s) 549
AjnI CCWGG 3 cut(s) 101, 147, 401
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 2 cut(s) 42, 208
ArsI GACNNNNNNTTYG 2 cut(s) 520, 552
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 2 cut(s) 62, 387
AsuC2I CCSGG 2 cut(s) 294, 312
AsuHPI GGTGA 3 cut(s) 170, 179, 513
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 2 cut(s) 62, 387
AxyI CCTNAGG 1 cut(s) 247
BaeGI GKGCMC 1 cut(s) 402
BciT130I CCWGG 3 cut(s) 103, 149, 403
BcnI CCSGG 2 cut(s) 294, 312
BfaI CTAG 3 cut(s) 66, 418, 554
BmcAI AGTACT 1 cut(s) 144
Bme1390I CCNGG 5 cut(s) 103, 149, 294, 312, 403
Bme18I GGWCC 2 cut(s) 62, 387
BmeT110I CYCGRG 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 549
BmgT120I GGNCC 2 cut(s) 62, 387
BmrFI CCNGG 5 cut(s) 103, 149, 294, 312, 403
BmsI GCATC 1 cut(s) 499
BpuMI CCSGG 2 cut(s) 294, 312
BsaJI CCNNGG 2 cut(s) 58, 401
Bsc4I CCNNNNNNNGG 4 cut(s) 192, 311, 381, 525
Bse118I RCCGGY 1 cut(s) 231
Bse21I CCTNAGG 1 cut(s) 247
BseBI CCWGG 3 cut(s) 103, 149, 403
BseDI CCNNGG 2 cut(s) 58, 401
BseGI GGATG 1 cut(s) 128
BseLI CCNNNNNNNGG 4 cut(s) 192, 311, 381, 525
BseRI GAGGAG 1 cut(s) 397
BseSI GKGCMC 1 cut(s) 402
BshFI GGCC 2 cut(s) 44, 210
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 3 cut(s) 232, 294, 312
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 4 cut(s) 192, 311, 381, 525
BsmFI GGGAC 1 cut(s) 357
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 2 cut(s) 44, 210
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 1 cut(s) 493
BspACI CCGC 1 cut(s) 183
BspANI GGCC 2 cut(s) 44, 210
BspHI TCATGA 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 231
BssAI RCCGGY 1 cut(s) 231
BssECI CCNNGG 2 cut(s) 58, 401
BssMI GATC 1 cut(s) 493
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 3 cut(s) 103, 149, 403
Bst4CI ACNGT 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 1 cut(s) 496
BstMBI GATC 1 cut(s) 493
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstNI CCWGG 3 cut(s) 103, 149, 403
BstSCI CCNGG 5 cut(s) 101, 147, 292, 310, 401
BstSLI GKGCMC 1 cut(s) 402
Bsu36I CCTNAGG 1 cut(s) 247
BsuRI GGCC 2 cut(s) 44, 210
BtrI CACGTC 1 cut(s) 549
BtsCI GGATG 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 424
CciI TCATGA 1 cut(s) 22
CfoI GCGC 1 cut(s) 351
Cfr10I RCCGGY 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 62, 387
Csp6I GTAC 2 cut(s) 143, 413
CviAII CATG 2 cut(s) 23, 287
CviJI RGCY 6 cut(s) 3, 44, 101, 210, 253, 422
CviKI_1 RGCY 6 cut(s) 3, 44, 101, 210, 253, 422
CviQI GTAC 2 cut(s) 143, 413
DdeI CTNAG 1 cut(s) 247
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
DraIII CACNNNGTG 1 cut(s) 449
Eco130I CCWWGG 1 cut(s) 58
Eco147I AGGCCT 2 cut(s) 44, 210
Eco47I GGWCC 2 cut(s) 62, 387
Eco57I CTGAAG 1 cut(s) 174
Eco81I CCTNAGG 1 cut(s) 247
Eco88I CYCGRG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 62
EcoRII CCWGG 3 cut(s) 101, 147, 401
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 2 cut(s) 26, 290
FaqI GGGAC 1 cut(s) 357
FatI CATG 2 cut(s) 22, 286
FauI CCCGC 1 cut(s) 190
FokI GGATG 1 cut(s) 135
FspBI CTAG 3 cut(s) 66, 418, 554
GlaI GCGC 1 cut(s) 350
HaeIII GGCC 2 cut(s) 44, 210
HapII CCGG 3 cut(s) 232, 294, 312
HhaI GCGC 1 cut(s) 351
Hin1II CATG 2 cut(s) 26, 290
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HinfI GANTC 1 cut(s) 90
HpaII CCGG 3 cut(s) 232, 294, 312
HphI GGTGA 3 cut(s) 170, 179, 513
Hpy166II GTNNAC 2 cut(s) 178, 443
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 3 cut(s) 23, 331, 455
Hpy8I GTNNAC 2 cut(s) 178, 443
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 1 cut(s) 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
HpyF3I CTNAG 1 cut(s) 247
HpySE526I ACGT 1 cut(s) 548
Hsp92II CATG 2 cut(s) 26, 290
HspAI GCGC 1 cut(s) 349
Kzo9I GATC 1 cut(s) 493
LweI GCATC 1 cut(s) 499
MaeI CTAG 3 cut(s) 66, 418, 554
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 2 cut(s) 234, 549
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MboII GAAGA 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 402
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 8 cut(s) 74, 158, 166, 200, 338, 375, 378, 451
MspI CCGG 3 cut(s) 232, 294, 312
MspR9I CCNGG 5 cut(s) 103, 149, 294, 312, 403
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 3 cut(s) 103, 149, 403
MwoI GCNNNNNNNGC 1 cut(s) 423
NciI CCSGG 2 cut(s) 294, 312
NdeII GATC 1 cut(s) 493
NlaIII CATG 2 cut(s) 26, 290
NmuCI GTSAC 1 cut(s) 549
PaeR7I CTCGAG 1 cut(s) 329
PagI TCATGA 1 cut(s) 22
PceI AGGCCT 2 cut(s) 44, 210
PcsI WCGNNNNNNNCGW 1 cut(s) 545
PctI GAATGC 1 cut(s) 351
PfoI TCCNGGA 1 cut(s) 147
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 62
Psp6I CCWGG 3 cut(s) 101, 147, 401
PspGI CCWGG 3 cut(s) 101, 147, 401
PspPI GGNCC 2 cut(s) 62, 387
PspPPI RGGWCCY 1 cut(s) 62
PsrI GAACNNNNNNTAC 2 cut(s) 282, 314
RsaI GTAC 2 cut(s) 144, 414
RsaNI GTAC 2 cut(s) 143, 413
Sau3AI GATC 1 cut(s) 493
Sau96I GGNCC 2 cut(s) 62, 387
ScaI AGTACT 1 cut(s) 144
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 5 cut(s) 103, 149, 294, 312, 403
SduI GDGCHC 1 cut(s) 402
SetI ASST 7 cut(s) 64, 85, 169, 177, 262, 462, 551
SfaNI GCATC 1 cut(s) 499
Sfr274I CTCGAG 1 cut(s) 329
SinI GGWCC 2 cut(s) 62, 387
SlaI CTCGAG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SseBI AGGCCT 2 cut(s) 44, 210
SsiI CCGC 1 cut(s) 183
SspMI CTAG 3 cut(s) 66, 418, 554
StuI AGGCCT 2 cut(s) 44, 210
StyD4I CCNGG 5 cut(s) 101, 147, 292, 310, 401
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 551
TaqI TCGA 2 cut(s) 322, 330
TaqII GACCGA 1 cut(s) 231
TatI WGTACW 1 cut(s) 142
TseFI GTSAC 1 cut(s) 549
Tsp45I GTSAC 1 cut(s) 549
TspDTI ATGAA 4 cut(s) 11, 39, 153, 303
VpaK11BI GGWCC 2 cut(s) 62, 387
XhoI CTCGAG 1 cut(s) 329
XspI CTAG 3 cut(s) 66, 418, 554
ZrmI AGTACT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.