Rmu_sc0004135.1_g000020

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004135.1
Physical Location & Seq
Forward (+)
99951 .. 102046
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004135.1_g000020.1.cds

Sequence Viewer

Length: 822 bp
atgtcgatgcccatcgacttccccgggactccgttcaacaaagccattaaggcggccaacttgatccggaaggatatgtacaagattatcaagcagaggaaggttgatttagcggacggcaaggcgtcaccgacacaagacatattgtcacacatgctctccacttgcgatgagcatggaacatatctgaaggagtccgatatcgccgataaaattcttggaatgttggttgccggctttgacacactgaccgttgcattgacattcattgtaaagtatatgggcgagcttccacatatctatgacgctgtctacaaagagcaaatggagatcgcaaattcaaaggccctaggggagtcgttgaagtgggatgaccttcagaagatgaagtactcatggaatgtagcacaagaagtgctgagattggcaccgcctgttcaaggagccttcagggtggcattggccgattttgccatcaatggttttcaaattccaaaagggtggaagttgtactggagcccactttcgacacacaagaatgccgatgtcttcccggaaccggagaaatttgacccatcaagatttgaaggaaagggacctgcaccttacatgtatgttccgttcggcggaggcccgagaatgtgtccaggaaatgagtactcccgagtggtaatactggtgttcatgcataacttggtgaagaggttcaagtgggaaaaagtttttcctaatgagaagacaaccattgctcctttccccatccccaccaaagggcttcccgtccgcctttttcatcaccacagatcatcagctcagccataa

Protein Analysis

273

Amino Acids

30.92

Weight (kDa)

9.2

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 607
AccB1I GGYRCC 1 cut(s) 427
AccI GTMKAC 1 cut(s) 312
AccIII TCCGGA 1 cut(s) 66
AciI CCGC 5 cut(s) 53, 113, 431, 627, 784
AclWI GGATC 1 cut(s) 58
AcoI YGGCCR 2 cut(s) 54, 462
AcsI RAATTY 4 cut(s) 213, 337, 489, 566
AcuI CTGAAG 3 cut(s) 209, 362, 433
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 4 cut(s) 80, 392, 512, 659
AfiI CCNNNNNNNGG 5 cut(s) 440, 559, 626, 770, 771
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 7 cut(s) 37, 342, 364, 440, 488, 587, 709
AhdI GACNNNNNGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 646
AluBI AGCT 2 cut(s) 289, 812
AluI AGCT 2 cut(s) 289, 812
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 3 cut(s) 23, 634, 663
Aor13HI TCCGGA 1 cut(s) 66
AoxI GGCC 4 cut(s) 54, 345, 462, 631
ApoI RAATTY 4 cut(s) 213, 337, 489, 566
Asp700I GAANNNNTTC 1 cut(s) 704
AspA2I CCTAGG 1 cut(s) 349
AspS9I GGNCC 3 cut(s) 346, 596, 632
AsuC2I CCSGG 3 cut(s) 24, 25, 554
AsuHPI GGTGA 3 cut(s) 120, 709, 788
AvaI CYCGRG 3 cut(s) 23, 634, 663
AvaII GGWCC 1 cut(s) 596
AvrII CCTAGG 1 cut(s) 349
BanI GGYRCC 1 cut(s) 427
BanII GRGCYC 1 cut(s) 521
BarI GAAGNNNNNNTAC 4 cut(s) 62, 94, 374, 406
BbsI GAAGAC 2 cut(s) 541, 743
BccI CCATC 4 cut(s) 20, 482, 583, 767
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 648
BcnI CCSGG 3 cut(s) 24, 25, 554
BfaI CTAG 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 607
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 1 cut(s) 54
BlnI CCTAGG 1 cut(s) 349
BlpI GCTNAGC 1 cut(s) 813
BlsI GCNGC 1 cut(s) 55
BmcAI AGTACT 2 cut(s) 392, 659
Bme1390I CCNGG 4 cut(s) 24, 25, 554, 648
Bme18I GGWCC 1 cut(s) 596
BmeRI GACNNNNNGTC 1 cut(s) 145
BmeT110I CYCGRG 3 cut(s) 23, 634, 663
BmgT120I GGNCC 3 cut(s) 346, 596, 632
BmiI GGNNCC 5 cut(s) 429, 445, 518, 558, 597
BmrFI CCNGG 4 cut(s) 24, 25, 554, 648
BpiI GAAGAC 2 cut(s) 541, 743
BpmI CTGGAG 1 cut(s) 535
Bpu1102I GCTNAGC 1 cut(s) 813
BpuMI CCSGG 3 cut(s) 24, 25, 554
BsaBI GATNNNNATC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 3 cut(s) 22, 23, 349
BsaWI WCCGGW 2 cut(s) 66, 559
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 733, 763
Bsc4I CCNNNNNNNGG 5 cut(s) 440, 559, 626, 770, 771
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 2 cut(s) 518, 681
Bse3DI GCAATG 1 cut(s) 744
Bse8I GATNNNNATC 1 cut(s) 11
BseAI TCCGGA 1 cut(s) 66
BseBI CCWGG 1 cut(s) 648
BseDI CCNNGG 3 cut(s) 22, 23, 349
BseGI GGATG 2 cut(s) 376, 759
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 5 cut(s) 440, 559, 626, 770, 771
BseMI GCAATG 1 cut(s) 744
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 2 cut(s) 518, 681
BsgI GTGCAG 1 cut(s) 585
BshFI GGCC 4 cut(s) 56, 347, 464, 633
BshNI GGYRCC 1 cut(s) 427
BsiHKCI CYCGRG 3 cut(s) 23, 634, 663
BsiSI CCGG 5 cut(s) 24, 67, 234, 554, 560
BslFI GGGAC 2 cut(s) 40, 609
BslI CCNNNNNNNGG 5 cut(s) 440, 559, 626, 770, 771
BsmFI GGGAC 2 cut(s) 40, 609
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 4 cut(s) 56, 347, 464, 633
BsoBI CYCGRG 3 cut(s) 23, 634, 663
Bsp1286I GDGCHC 1 cut(s) 521
Bsp13I TCCGGA 1 cut(s) 66
Bsp1407I TGTACA 1 cut(s) 78
Bsp143I GATC 3 cut(s) 63, 330, 803
Bsp1720I GCTNAGC 1 cut(s) 813
BspACI CCGC 5 cut(s) 53, 113, 431, 627, 784
BspANI GGCC 4 cut(s) 56, 347, 464, 633
BspCNI CTCAG 1 cut(s) 411
BspEI TCCGGA 1 cut(s) 66
BspLI GGNNCC 5 cut(s) 429, 445, 518, 558, 597
BspMI ACCTGC 1 cut(s) 607
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 427
BsrDI GCAATG 1 cut(s) 744
BsrFI RCCGGY 1 cut(s) 233
BsrGI TGTACA 1 cut(s) 78
BsrI ACTGG 2 cut(s) 518, 681
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 22, 23, 349
BssMI GATC 3 cut(s) 63, 330, 803
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 349
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 695
BstACI GRCGYC 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 235, 287
BstDEI CTNAG 2 cut(s) 419, 813
BstENI CCTNNNNNAGG 1 cut(s) 438
BstF5I GGATG 2 cut(s) 376, 759
BstKTI GATC 3 cut(s) 66, 333, 806
BstMBI GATC 3 cut(s) 63, 330, 803
BstMWI GCNNNNNNNGC 2 cut(s) 50, 470
BstNI CCWGG 1 cut(s) 648
BstNSI RCATGY 2 cut(s) 157, 613
BstSCI CCNGG 4 cut(s) 22, 23, 552, 646
BstV2I GAAGAC 2 cut(s) 541, 743
BstXI CCANNNNNNTGG 1 cut(s) 501
BsuRI GGCC 4 cut(s) 56, 347, 464, 633
BtgZI GCGATG 1 cut(s) 183
BtsCI GGATG 2 cut(s) 376, 759
BtsIMutI CAGTG 1 cut(s) 245
BveI ACCTGC 1 cut(s) 607
Cac8I GCNNGC 2 cut(s) 235, 287
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 3 cut(s) 346, 596, 632
Cfr9I CCCGGG 1 cut(s) 23
CseI GACGC 2 cut(s) 114, 314
Csp6I GTAC 4 cut(s) 79, 391, 511, 658
CviAII CATG 5 cut(s) 154, 176, 396, 610, 685
CviQI GTAC 4 cut(s) 79, 391, 511, 658
DdeI CTNAG 2 cut(s) 419, 813
DpnI GATC 3 cut(s) 65, 332, 805
DpnII GATC 3 cut(s) 63, 330, 803
DriI GACNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 2 cut(s) 54, 462
Eam1104I CTCTTC 1 cut(s) 695
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 695
EciI GGCGGA 2 cut(s) 642, 773
Eco130I CCWWGG 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 521
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 596
Eco57I CTGAAG 3 cut(s) 209, 362, 433
Eco88I CYCGRG 3 cut(s) 23, 634, 663
EcoNI CCTNNNNNAGG 1 cut(s) 438
EcoO109I RGGNCCY 2 cut(s) 346, 596
EcoRII CCWGG 1 cut(s) 646
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 349
EcoT22I ATGCAT 1 cut(s) 690
EcoT38I GRGCYC 1 cut(s) 521
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 5 cut(s) 157, 179, 399, 613, 688
FaqI GGGAC 2 cut(s) 40, 609
FatI CATG 5 cut(s) 153, 175, 395, 609, 684
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 2 cut(s) 383, 746
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 350
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 535
HaeIII GGCC 4 cut(s) 56, 347, 464, 633
HapII CCGG 5 cut(s) 24, 67, 234, 554, 560
HgaI GACGC 2 cut(s) 114, 314
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 5 cut(s) 157, 179, 399, 613, 688
HinfI GANTC 3 cut(s) 28, 194, 356
HpaII CCGG 5 cut(s) 24, 67, 234, 554, 560
HphI GGTGA 3 cut(s) 120, 709, 788
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 3 cut(s) 189, 199, 381
Hpy188III TCNNGA 3 cut(s) 67, 579, 663
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 6 cut(s) 64, 94, 184, 386, 457, 581
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 3 cut(s) 257, 602, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 470
HpyF3I CTNAG 2 cut(s) 419, 813
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 5 cut(s) 157, 179, 399, 613, 688
Kpn2I TCCGGA 1 cut(s) 66
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Kzo9I GATC 3 cut(s) 63, 330, 803
LmnI GCTCC 3 cut(s) 443, 516, 754
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 2 cut(s) 126, 147
MalI GATC 3 cut(s) 65, 332, 805
MboI GATC 3 cut(s) 63, 330, 803
MboII GAAGA 4 cut(s) 394, 541, 712, 748
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 4 cut(s) 213, 337, 489, 566
MlyI GAGTC 3 cut(s) 22, 203, 365
MnlI CCTC 3 cut(s) 90, 623, 696
Mph1103I ATGCAT 1 cut(s) 690
MroI TCCGGA 1 cut(s) 66
MroNI GCCGGC 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 704
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 2 cut(s) 300, 537
MspI CCGG 5 cut(s) 24, 67, 234, 554, 560
MspR9I CCNGG 4 cut(s) 24, 25, 554, 648
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 1 cut(s) 648
MwoI GCNNNNNNNGC 2 cut(s) 50, 470
NaeI GCCGGC 1 cut(s) 235
NciI CCSGG 3 cut(s) 24, 25, 554
NdeII GATC 3 cut(s) 63, 330, 803
NgoMIV GCCGGC 1 cut(s) 233
NlaIII CATG 5 cut(s) 157, 179, 399, 613, 688
NlaIV GGNNCC 5 cut(s) 429, 445, 518, 558, 597
NmuCI GTSAC 2 cut(s) 126, 147
NsiI ATGCAT 1 cut(s) 690
NspI RCATGY 2 cut(s) 157, 613
PciI ACATGT 1 cut(s) 609
PctI GAATGC 1 cut(s) 544
PdiI GCCGGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 704
PflFI GACNNNGTC 1 cut(s) 308
PfoI TCCNGGA 2 cut(s) 552, 646
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 3 cut(s) 22, 202, 364
PpsI GAGTC 3 cut(s) 22, 202, 364
PpuMI RGGWCCY 1 cut(s) 596
PscI ACATGT 1 cut(s) 609
Psp5II RGGWCCY 1 cut(s) 596
Psp6I CCWGG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 5 cut(s) 429, 445, 518, 558, 597
PspPI GGNCC 3 cut(s) 346, 596, 632
PspPPI RGGWCCY 1 cut(s) 596
PsrI GAACNNNNNNTAC 2 cut(s) 605, 637
PsyI GACNNNGTC 1 cut(s) 308
RsaI GTAC 4 cut(s) 80, 392, 512, 659
RsaNI GTAC 4 cut(s) 79, 391, 511, 658
RseI CAYNNNNRTG 2 cut(s) 300, 537
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 3 cut(s) 63, 330, 803
Sau96I GGNCC 3 cut(s) 346, 596, 632
ScaI AGTACT 2 cut(s) 392, 659
SchI GAGTC 3 cut(s) 22, 203, 365
ScrFI CCNGG 4 cut(s) 24, 25, 554, 648
SduI GDGCHC 1 cut(s) 521
SetI ASST 7 cut(s) 105, 291, 378, 601, 607, 707, 814
SinI GGWCC 1 cut(s) 596
SmaI CCCGGG 1 cut(s) 25
SmiMI CAYNNNNRTG 2 cut(s) 300, 537
Sse9I AATT 4 cut(s) 213, 337, 489, 566
SsiI CCGC 5 cut(s) 53, 113, 431, 627, 784
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 4 cut(s) 22, 23, 552, 646
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 3 cut(s) 5, 15, 527
TasI AATT 4 cut(s) 213, 337, 489, 566
TatI WGTACW 4 cut(s) 78, 390, 510, 657
TauI GCSGC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 252
TseFI GTSAC 2 cut(s) 126, 147
Tsp45I GTSAC 2 cut(s) 126, 147
TspDTI ATGAA 4 cut(s) 256, 401, 673, 782
TspGWI ACGGA 2 cut(s) 21, 609
TspMI CCCGGG 1 cut(s) 23
TspRI CASTG 1 cut(s) 252
Tth111I GACNNNGTC 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 596
XagI CCTNNNNNAGG 1 cut(s) 438
XapI RAATTY 4 cut(s) 213, 337, 489, 566
XceI RCATGY 2 cut(s) 157, 613
XmaI CCCGGG 1 cut(s) 23
XmaJI CCTAGG 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 312
XmnI GAANNNNTTC 1 cut(s) 704
XspI CTAG 1 cut(s) 350
ZrmI AGTACT 2 cut(s) 392, 659
Zsp2I ATGCAT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.