Rorug01G0051900

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000192
Physical Location & Seq
Forward (+)
8521829 .. 8522035
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0051900.1

Sequence Viewer

Length: 207 bp
ATGGTCGTCGATATCAACAACCTGGCACATGCTCAGATCAGGCCCCAAGTGGGCTTCACCGAGAATGGCTCAGCCACATTCGTCAGCACCGGCTATCCTTGCCTTGATCTCTTCTTCCACGTTGTCCCCAACATTCCGGCGTCATATCTAAACCAGCAGCTCCCTCACCACCCTCAAGCTCATCTGCAACCTCCGAGGCGTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

68

Amino Acids

7.6

Weight (kDa)

6.96

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 20 - 54 1.5e-06 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 50
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 2 cut(s) 160, 179
AluI AGCT 2 cut(s) 160, 179
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 49, 158
BbvI GCAGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 23
BisI GCNGC 1 cut(s) 158
BlpI GCTNAGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 53, 85
Bpu1102I GCTNAGC 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 89
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 2 cut(s) 47, 84
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 43
BsiSI CCGG 2 cut(s) 90, 137
BsiWI CGTACG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 43
Bsp143I GATC 2 cut(s) 36, 106
Bsp1720I GCTNAGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 2 cut(s) 46, 83
BspLI GGNNCC 1 cut(s) 44
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 2 cut(s) 36, 106
BssNI GRCGYC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 33, 70
BstKTI GATC 2 cut(s) 39, 109
BstMBI GATC 2 cut(s) 36, 106
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 21
BstSNI TACGTA 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 169
BsuRI GGCC 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 42
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 29
CviJI RGCY 7 cut(s) 43, 54, 69, 74, 93, 160, 179
CviKI_1 RGCY 7 cut(s) 43, 54, 69, 74, 93, 160, 179
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 33, 70
DpnI GATC 2 cut(s) 38, 108
DpnII GATC 2 cut(s) 36, 106
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco105I TACGTA 1 cut(s) 204
Eco32I GATATC 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 21
EcoRV GATATC 1 cut(s) 13
FaeI CATG 1 cut(s) 32
FaiI YATR 2 cut(s) 30, 145
FaqI GGGAC 1 cut(s) 110
FatI CATG 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 158
HaeIII GGCC 1 cut(s) 43
HapII CCGG 2 cut(s) 90, 137
HgaI GACGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 1 cut(s) 32
HpaII CCGG 2 cut(s) 90, 137
HphI GGTGA 2 cut(s) 49, 158
Hpy188I TCNGA 2 cut(s) 36, 195
Hpy99I CGWCG 1 cut(s) 11
HpyCH4IV ACGT 2 cut(s) 120, 203
HpyCH4V TGCA 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 2 cut(s) 33, 70
HpySE526I ACGT 2 cut(s) 120, 203
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 1 cut(s) 32
Kzo9I GATC 2 cut(s) 36, 106
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 6 cut(s) 8, 25, 35, 103, 150, 167
Lsp1109I GCAGC 1 cut(s) 169
MaeII ACGT 2 cut(s) 120, 203
MalI GATC 2 cut(s) 38, 108
MboI GATC 2 cut(s) 36, 106
MboII GAAGA 2 cut(s) 103, 106
MnlI CCTC 4 cut(s) 174, 183, 189, 201
MspI CCGG 2 cut(s) 90, 137
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 99
NdeII GATC 2 cut(s) 36, 106
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 44
NspI RCATGY 1 cut(s) 32
Pfl23II CGTACG 1 cut(s) 200
PkrI GCNGC 1 cut(s) 159
Ppu21I YACGTR 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspLI CGTACG 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 42
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 2 cut(s) 36, 106
Sau96I GGNCC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 23
SetI ASST 6 cut(s) 24, 123, 162, 181, 193, 206
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
SnaBI TACGTA 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 21
TaiI ACGT 2 cut(s) 123, 206
TaqI TCGA 1 cut(s) 9
TseI GCWGC 1 cut(s) 157
XceI RCATGY 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.