Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004135.1

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1585

Gene Structure 1585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004135.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 706 bp

gcacagatcccagttcaccggcaacaacctagccccgggtaacgtcggctacccggtgatcggagagacctaccagttcttctcttccggcactcctcccaagtcttcaagaccggcctccttggttggggagagaactgccttcttctgcggcaccgcttgcaacaagttcttgttctccgagaacaatcttgtccgagtctggtttccgagctgtgtcaacaagatcttcccttcttctaccgaaacatccgccgcagaggagtccaacaagatgaaaaggatgctacccaacttcttgaagctcgacgctctgcagcgatacattggaatcattaaccagtgtacccaatctcactttgcagatagctgggaaaaccaaaacgaagttcatgccttagaactcgccaagaaccttgaagatcaagcggacattgaaaaactcagcaaaccgttctgtttagtgaatgccggaaccatatcgttacccatcgacttcccaggaactccgtttaataaagccatcaaagcggccaacttgattaggaaggatttatacaagatgatcaagcagaggaaggtcgacttagtagaggccaatgcatcccccacacaagacatgttatcacacatgctcttgaccggcggtgaagatggaacatatctgaaggaatccgatatcgctgataagattcttggtatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

234

Amino Acids

25.97

Weight (kDa)

7.06

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	583
AciI	CCGC	7 cut(s)	151, 157, 253, 256, 429, 531, 646
AcoI	YGGCCR	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	3 cut(s)	35, 60, 127
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	4 cut(s)	109, 302, 420, 438
AjnI	CCWGG	1 cut(s)	500
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AluBI	AGCT	3 cut(s)	214, 305, 370
AluI	AGCT	3 cut(s)	214, 305, 370
Alw26I	GTCTC	1 cut(s)	60
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	3 cut(s)	115, 532, 595
ApeKI	GCWGC	1 cut(s)	317
AsuC2I	CCSGG	3 cut(s)	36, 37, 54
AsuHPI	GGTGA	3 cut(s)	8, 68, 660
AvaI	CYCGRG	1 cut(s)	35
BaeI	ACNNNNGTAYC	2 cut(s)	329, 362
BanI	GGYRCC	1 cut(s)	153
BarI	GAAGNNNNNNTAC	2 cut(s)	540, 572
BbsI	GAAGAC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	3 cut(s)	498, 531, 648
BcgI	CGANNNNNNTGC	2 cut(s)	375, 409
BciT130I	CCWGG	1 cut(s)	502
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	3 cut(s)	36, 37, 54
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	315
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	4 cut(s)	152, 256, 318, 532
BlsI	GCNGC	4 cut(s)	153, 257, 319, 533
Bme1390I	CCNGG	4 cut(s)	36, 37, 54, 502
BmeT110I	CYCGRG	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	155, 476
BmrFI	CCNGG	4 cut(s)	36, 37, 54, 502
BmrI	ACTGGG	1 cut(s)	5
BmsI	GCATC	2 cut(s)	274, 612
BmuI	ACTGGG	1 cut(s)	5
BpiI	GAAGAC	1 cut(s)	97
BpuMI	CCSGG	3 cut(s)	36, 37, 54
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	4 cut(s)	34, 35, 121, 500
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 60, 127
Bse118I	RCCGGY	3 cut(s)	18, 113, 642
Bse1I	ACTGG	3 cut(s)	11, 74, 341
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	4 cut(s)	34, 35, 121, 500
BseGI	GGATG	3 cut(s)	249, 289, 603
BseLI	CCNNNNNNNGG	3 cut(s)	35, 60, 127
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	3 cut(s)	11, 74, 341
BseRI	GAGGAG	2 cut(s)	85, 276
BseXI	GCAGC	1 cut(s)	329
BseYI	CCCAGC	1 cut(s)	370
BshFI	GGCC	3 cut(s)	117, 534, 597
BshNI	GGYRCC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	7 cut(s)	19, 36, 54, 88, 114, 472, 643
BslI	CCNNNNNNNGG	3 cut(s)	35, 60, 127
BsmAI	GTCTC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	3 cut(s)	117, 534, 597
Bso31I	GGTCTC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	35
Bsp143I	GATC	5 cut(s)	6, 58, 226, 422, 565
BspACI	CCGC	7 cut(s)	151, 157, 253, 256, 429, 531, 646
BspANI	GGCC	3 cut(s)	117, 534, 597
BspCNI	CTCAG	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	155, 476
BspMAI	CTGCAG	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	60
BsrFI	RCCGGY	3 cut(s)	18, 113, 642
BsrI	ACTGG	3 cut(s)	11, 74, 341
BssAI	RCCGGY	3 cut(s)	18, 113, 642
BssECI	CCNNGG	4 cut(s)	34, 35, 121, 500
BssMI	GATC	5 cut(s)	6, 58, 226, 422, 565
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	398, 444, 587
BstF5I	GGATG	3 cut(s)	249, 289, 603
BstKTI	GATC	5 cut(s)	9, 61, 229, 425, 568
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	5 cut(s)	6, 58, 226, 422, 565
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 528
BstNI	CCWGG	1 cut(s)	502
BstNSI	RCATGY	2 cut(s)	623, 635
BstSCI	CCNGG	4 cut(s)	34, 35, 52, 500
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	329
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	2 cut(s)	6, 226
BstYI	RGATCY	2 cut(s)	6, 226
BsuRI	GGCC	3 cut(s)	117, 534, 597
BtsCI	GGATG	3 cut(s)	249, 289, 603
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	161
Cfr10I	RCCGGY	3 cut(s)	18, 113, 642
Cfr9I	CCCGGG	1 cut(s)	35
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	3 cut(s)	393, 620, 632
CviJI	RGCY	9 cut(s)	33, 49, 117, 214, 305, 370, 522, 534, 597
CviKI_1	RGCY	9 cut(s)	33, 49, 117, 214, 305, 370, 522, 534, 597
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	3 cut(s)	398, 444, 587
DpnI	GATC	5 cut(s)	8, 60, 228, 424, 567
DpnII	GATC	5 cut(s)	6, 58, 226, 422, 565
EaeI	YGGCCR	1 cut(s)	532
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	60
Eco32I	GATATC	1 cut(s)	680
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	500
EcoRV	GATATC	1 cut(s)	680
EcoT14I	CCWWGG	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	3 cut(s)	396, 623, 635
FaiI	YATR	7 cut(s)	394, 480, 557, 621, 633, 662, 702
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FatI	CATG	3 cut(s)	392, 619, 631
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	4 cut(s)	152, 256, 318, 532
FokI	GGATG	3 cut(s)	236, 296, 590
Fsp4HI	GCNGC	4 cut(s)	152, 256, 318, 532
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	4 cut(s)	152, 256, 318, 532
GsaI	CCCAGC	1 cut(s)	374
HaeIII	GGCC	3 cut(s)	117, 534, 597
HapII	CCGG	7 cut(s)	19, 36, 54, 88, 114, 472, 643
HgaI	GACGC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	396, 623, 635
HincII	GTYRAC	2 cut(s)	221, 584
HindII	GTYRAC	2 cut(s)	221, 584
HinfI	GANTC	5 cut(s)	199, 264, 331, 672, 692
HpaII	CCGG	7 cut(s)	19, 36, 54, 88, 114, 472, 643
HphI	GGTGA	3 cut(s)	8, 68, 660
Hpy166II	GTNNAC	4 cut(s)	16, 221, 346, 584
Hpy188I	TCNGA	6 cut(s)	63, 182, 198, 211, 667, 677
Hpy188III	TCNNGA	3 cut(s)	109, 299, 638
Hpy8I	GTNNAC	4 cut(s)	16, 221, 346, 584
Hpy99I	CGWCG	2 cut(s)	48, 312
HpyAV	CCTTC	5 cut(s)	152, 244, 542, 572, 662
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	163, 317, 363, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 528
HpyF3I	CTNAG	3 cut(s)	398, 444, 587
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	3 cut(s)	396, 623, 635
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	5 cut(s)	6, 58, 226, 422, 565
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	2 cut(s)	274, 612
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	2 cut(s)	39, 484
MalI	GATC	5 cut(s)	8, 60, 228, 424, 567
MboI	GATC	5 cut(s)	6, 58, 226, 422, 565
MboII	GAAGA	8 cut(s)	71, 76, 97, 137, 221, 229, 432, 663
MflI	RGATCY	2 cut(s)	6, 226
MlyI	GAGTC	2 cut(s)	208, 273
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	5 cut(s)	106, 128, 254, 568, 587
Mph1103I	ATGCAT	1 cut(s)	605
MseI	TTAA	2 cut(s)	337, 514
MspI	CCGG	7 cut(s)	19, 36, 54, 88, 114, 472, 643
MspR9I	CCNGG	4 cut(s)	36, 37, 54, 502
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	2 cut(s)	160, 528
NciI	CCSGG	3 cut(s)	36, 37, 54
NdeII	GATC	5 cut(s)	6, 58, 226, 422, 565
NlaIII	CATG	3 cut(s)	396, 623, 635
NlaIV	GGNNCC	2 cut(s)	155, 476
NsiI	ATGCAT	1 cut(s)	605
NspI	RCATGY	2 cut(s)	623, 635
PciI	ACATGT	1 cut(s)	619
PctI	GAATGC	1 cut(s)	473
PfeI	GAWTC	3 cut(s)	331, 672, 692
PkrI	GCNGC	4 cut(s)	153, 257, 319, 533
PleI	GAGTC	2 cut(s)	207, 272
PpsI	GAGTC	2 cut(s)	207, 272
PscI	ACATGT	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	155, 476
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	2 cut(s)	6, 226
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SalI	GTCGAC	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	337, 514
SatI	GCNGC	4 cut(s)	152, 256, 318, 532
Sau3AI	GATC	5 cut(s)	6, 58, 226, 422, 565
SchI	GAGTC	2 cut(s)	208, 273
ScrFI	CCNGG	4 cut(s)	36, 37, 54, 502
SetI	ASST	8 cut(s)	31, 46, 72, 216, 307, 372, 418, 583
SfaNI	GCATC	2 cut(s)	274, 612
SfcI	CTRYAG	1 cut(s)	315
SmaI	CCCGGG	1 cut(s)	37
SsiI	CCGC	7 cut(s)	151, 157, 253, 256, 429, 531, 646
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	4 cut(s)	34, 35, 52, 500
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	454
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	3 cut(s)	307, 493, 583
TauI	GCSGC	3 cut(s)	154, 258, 534
TfiI	GAWTC	3 cut(s)	331, 672, 692
Tru1I	TTAA	2 cut(s)	337, 514
Tru9I	TTAA	2 cut(s)	337, 514
TscAI	CASTG	1 cut(s)	348
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	291, 381
TspGWI	ACGGA	1 cut(s)	499
TspMI	CCCGGG	1 cut(s)	35
TspRI	CASTG	1 cut(s)	348
XceI	RCATGY	2 cut(s)	623, 635
XmaI	CCCGGG	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	583
XspI	CTAG	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.