Rh1DG256500

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
47019857 .. 47025217
5361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG256500.1

Sequence Viewer

Length: 993 bp
ATGGTATTGGAGCAATATTATTTCCATCCCATCACCCTCCTCTTGGGCTTTGTTTCCTTTCTGGCGATCTCTCTCTTGGTGCTCTTCTACAGGCACAGATCCCAGTTCACCGGCAACAACCTACCCCCGGGTAACGTCGGCTACCCGGTGATCGGAGAGACCTACGAGTTCTTCTCTTCGGGTCAGAAAGGCCACCCCGAGAAGTTCATCTTAGACCGGGTGAACAGGCACTCCTCCCAAGTCTTCAAGACCTCCTTGGTTGGGGAGAGAACTGCCTTCTTCTGCGGCACCGCTTGCAACAAGTTCTTGTTCTCCAATGAGAACAAGCTTGTCCGAGTCTGGTTTCCGAGCTGTGTCAACAAGATCTTCCCTTCTTCTACCGAAACATCCGCCGCAGAGGAGTCCAACAAGATGAAAAGGATGCTACCCAACTTCTTGAAGCTCGACGCTCTGCAGCGATACTTTGGAATCATTAACCAGTGTACCCAATCTCACTTTGCAGATAGCTGGGAAAACCAAAACGAAGTTCATGCCTTAGAACTCGCCAAGAACCACACCTTCAAGCTTGCTGCACGCTTGTTCGTTAGCCTTGAAGATCAAGCGGACATTGAAAAACTCAGCAAACCGTTCTGTTTAGTGAATGCCGGAACCATATCGTTACCCATCGACTTCCCAGGAACTCCGTTTAATAAAGCCATCAAGGCGGCCAACTTGATTAGGAAGGATTTATACAAGATGATCAAGCAGAGGAAGGTCGACTTAGCAGAGGGCAATGCATCCCCCACACAAGACATGTTATCACACATGCTCTTGACCTGCGATGAAGATGGAACATATCTGAAGGAATCCGATATCGCTGATAAGATTCTTGGTATGTTGGTTGCTGGCTTCGACACAGTTAGTGCTGCTTTGACTTTCATTGTGAAGTATCTTGGCGAGCTACCTCATATCTATGATGCAGTCTACAAAGGTAATGCTCGGAGTACTACATGA

Protein Analysis

330

Amino Acids

37.18

Weight (kDa)

8.12

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 222 - 323 5.8e-10 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 824
AccB1I GGYRCC 1 cut(s) 287
AccI GTMKAC 2 cut(s) 756, 963
AciI CCGC 6 cut(s) 285, 291, 390, 393, 602, 704
AclWI GGATC 1 cut(s) 93
AcoI YGGCCR 1 cut(s) 705
AcuI CTGAAG 1 cut(s) 860
AfaI GTAC 2 cut(s) 484, 985
AfiI CCNNNNNNNGG 4 cut(s) 43, 127, 152, 261
AflIII ACRYGT 1 cut(s) 792
AgsI TTSAA 5 cut(s) 247, 439, 562, 593, 611
AjnI CCWGG 1 cut(s) 673
AjuI GAANNNNNNNTTGG 2 cut(s) 510, 542
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 6 cut(s) 328, 351, 442, 507, 565, 940
AluI AGCT 6 cut(s) 328, 351, 442, 507, 565, 940
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 1 cut(s) 93
Ama87I CYCGRG 2 cut(s) 127, 197
AoxI GGCC 2 cut(s) 190, 705
ApeKI GCWGC 3 cut(s) 454, 569, 905
AsuC2I CCSGG 4 cut(s) 128, 129, 146, 218
AsuHPI GGTGA 4 cut(s) 25, 100, 160, 232
AvaI CYCGRG 2 cut(s) 127, 197
BaeI ACNNNNGTAYC 2 cut(s) 466, 499
BanI GGYRCC 1 cut(s) 287
BarI GAAGNNNNNNTAC 2 cut(s) 713, 745
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 466, 556, 892
BccI CCATC 5 cut(s) 33, 38, 671, 704, 821
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BciT130I CCWGG 1 cut(s) 675
BclI TGATCA 1 cut(s) 738
BcnI CCSGG 4 cut(s) 128, 129, 146, 218
BcoDI GTCTC 1 cut(s) 152
BfmI CTRYAG 2 cut(s) 88, 452
BfuAI ACCTGC 1 cut(s) 824
BglI GCCNNNNNGGC 1 cut(s) 701
BglII AGATCT 1 cut(s) 363
BisI GCNGC 6 cut(s) 286, 393, 455, 570, 705, 906
BlsI GCNGC 6 cut(s) 287, 394, 456, 571, 706, 907
BmcAI AGTACT 1 cut(s) 985
Bme1390I CCNGG 5 cut(s) 128, 129, 146, 218, 675
BmeT110I CYCGRG 2 cut(s) 127, 197
BmiI GGNNCC 2 cut(s) 289, 649
BmrFI CCNGG 5 cut(s) 128, 129, 146, 218, 675
BmrI ACTGGG 1 cut(s) 97
BmsI GCATC 3 cut(s) 411, 785, 946
BmuI ACTGGG 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 235
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpuMI CCSGG 4 cut(s) 128, 129, 146, 218
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 4 cut(s) 126, 127, 255, 673
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 127, 152, 261
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 2 cut(s) 103, 478
Bse3DI GCAATG 1 cut(s) 778
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 4 cut(s) 126, 127, 255, 673
BseGI GGATG 4 cut(s) 25, 386, 426, 776
BseLI CCNNNNNNNGG 4 cut(s) 43, 127, 152, 261
BseMI GCAATG 1 cut(s) 778
BseMII CTCAG 1 cut(s) 631
BseNI ACTGG 2 cut(s) 103, 478
BseRI GAGGAG 3 cut(s) 29, 223, 413
BseXI GCAGC 3 cut(s) 466, 556, 892
BseYI CCCAGC 1 cut(s) 507
BsgI GTGCAG 1 cut(s) 555
BshFI GGCC 2 cut(s) 192, 707
BshNI GGYRCC 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 2 cut(s) 127, 197
BsiSI CCGG 5 cut(s) 111, 128, 146, 217, 645
BslI CCNNNNNNNGG 4 cut(s) 43, 127, 152, 261
BsmAI GTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 2 cut(s) 192, 707
Bso31I GGTCTC 1 cut(s) 152
BsoBI CYCGRG 2 cut(s) 127, 197
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 6 cut(s) 66, 98, 150, 363, 595, 738
BspACI CCGC 6 cut(s) 285, 291, 390, 393, 602, 704
BspANI GGCC 2 cut(s) 192, 707
BspCNI CTCAG 1 cut(s) 630
BspLI GGNNCC 2 cut(s) 289, 649
BspMAI CTGCAG 1 cut(s) 456
BspMI ACCTGC 1 cut(s) 824
BspPI GGATC 1 cut(s) 93
BspQI GCTCTTC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 778
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 2 cut(s) 103, 478
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 4 cut(s) 126, 127, 255, 673
BssMI GATC 6 cut(s) 66, 98, 150, 363, 595, 738
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 2 cut(s) 627, 898
Bst6I CTCTTC 2 cut(s) 89, 181
BstAPI GCANNNNNTGC 1 cut(s) 294
BstC8I GCNNGC 5 cut(s) 295, 567, 574, 886, 938
BstDEI CTNAG 4 cut(s) 211, 535, 617, 760
BstF5I GGATG 4 cut(s) 25, 386, 426, 776
BstKTI GATC 6 cut(s) 69, 101, 153, 366, 598, 741
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 6 cut(s) 66, 98, 150, 363, 595, 738
BstMWI GCNNNNNNNGC 2 cut(s) 294, 701
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 2 cut(s) 796, 808
BstSCI CCNGG 5 cut(s) 126, 127, 144, 216, 673
BstSFI CTRYAG 2 cut(s) 88, 452
BstV1I GCAGC 3 cut(s) 466, 556, 892
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 2 cut(s) 98, 363
BstYI RGATCY 2 cut(s) 98, 363
BsuRI GGCC 2 cut(s) 192, 707
BtgZI GCGATG 1 cut(s) 834
BtsCI GGATG 4 cut(s) 25, 386, 426, 776
BtsIMutI CAGTG 1 cut(s) 485
BveI ACCTGC 1 cut(s) 824
Cac8I GCNNGC 5 cut(s) 295, 567, 574, 886, 938
Cfr10I RCCGGY 1 cut(s) 110
Cfr9I CCCGGG 1 cut(s) 127
CseI GACGC 1 cut(s) 455
Csp6I GTAC 2 cut(s) 483, 984
CviAII CATG 4 cut(s) 530, 793, 805, 990
CviQI GTAC 2 cut(s) 483, 984
DdeI CTNAG 4 cut(s) 211, 535, 617, 760
DpnI GATC 6 cut(s) 68, 100, 152, 365, 597, 740
DpnII GATC 6 cut(s) 66, 98, 150, 363, 595, 738
EaeI YGGCCR 1 cut(s) 705
Eam1104I CTCTTC 2 cut(s) 89, 181
EarI CTCTTC 2 cut(s) 89, 181
EciI GGCGGA 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 853
Eco57I CTGAAG 1 cut(s) 860
Eco88I CYCGRG 2 cut(s) 127, 197
EcoRII CCWGG 1 cut(s) 673
EcoRV GATATC 1 cut(s) 853
EcoT14I CCWWGG 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 778
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 4 cut(s) 533, 796, 808, 993
FalI AAGNNNNNCTT 6 cut(s) 194, 226, 239, 271, 743, 775
FatI CATG 4 cut(s) 529, 792, 804, 989
FbaI TGATCA 1 cut(s) 738
FblI GTMKAC 2 cut(s) 756, 963
Fnu4HI GCNGC 6 cut(s) 286, 393, 455, 570, 705, 906
FokI GGATG 4 cut(s) 12, 373, 433, 763
Fsp4HI GCNGC 6 cut(s) 286, 393, 455, 570, 705, 906
GluI GCNGC 6 cut(s) 286, 393, 455, 570, 705, 906
GsaI CCCAGC 1 cut(s) 511
HaeIII GGCC 2 cut(s) 192, 707
HapII CCGG 5 cut(s) 111, 128, 146, 217, 645
HgaI GACGC 1 cut(s) 455
Hin1II CATG 4 cut(s) 533, 796, 808, 993
HincII GTYRAC 2 cut(s) 358, 757
HindII GTYRAC 2 cut(s) 358, 757
HindIII AAGCTT 2 cut(s) 326, 563
HinfI GANTC 5 cut(s) 336, 401, 468, 845, 865
HpaII CCGG 5 cut(s) 111, 128, 146, 217, 645
HphI GGTGA 4 cut(s) 25, 100, 160, 232
Hpy166II GTNNAC 6 cut(s) 108, 223, 358, 483, 757, 964
Hpy188I TCNGA 7 cut(s) 155, 186, 335, 348, 840, 850, 981
Hpy188III TCNNGA 3 cut(s) 247, 436, 811
Hpy8I GTNNAC 6 cut(s) 108, 223, 358, 483, 757, 964
Hpy99I CGWCG 2 cut(s) 140, 449
HpyAV CCTTC 6 cut(s) 286, 381, 568, 715, 745, 835
HpyCH4III ACNGT 2 cut(s) 627, 898
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 6 cut(s) 297, 454, 500, 572, 776, 959
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 701
HpyF3I CTNAG 4 cut(s) 211, 535, 617, 760
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 4 cut(s) 533, 796, 808, 993
Ksp22I TGATCA 1 cut(s) 738
Kzo9I GATC 6 cut(s) 66, 98, 150, 363, 595, 738
LguI GCTCTTC 1 cut(s) 89
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 3 cut(s) 466, 556, 892
LweI GCATC 3 cut(s) 411, 785, 946
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 131, 657
MalI GATC 6 cut(s) 68, 100, 152, 365, 597, 740
MboI GATC 6 cut(s) 66, 98, 150, 363, 595, 738
MboII GAAGA 9 cut(s) 76, 163, 168, 235, 271, 358, 366, 605, 836
MflI RGATCY 2 cut(s) 98, 363
MhlI GDGCHC 1 cut(s) 84
MlyI GAGTC 2 cut(s) 345, 410
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 8 cut(s) 47, 50, 244, 262, 391, 741, 760, 954
Mph1103I ATGCAT 1 cut(s) 778
MseI TTAA 2 cut(s) 474, 687
MslI CAYNNNNRTG 1 cut(s) 951
MspI CCGG 5 cut(s) 111, 128, 146, 217, 645
MspR9I CCNGG 5 cut(s) 128, 129, 146, 218, 675
Mva1269I GAATGC 1 cut(s) 646
MvaI CCWGG 1 cut(s) 675
MwoI GCNNNNNNNGC 2 cut(s) 294, 701
NciI CCSGG 4 cut(s) 128, 129, 146, 218
NdeII GATC 6 cut(s) 66, 98, 150, 363, 595, 738
NlaIII CATG 4 cut(s) 533, 796, 808, 993
NlaIV GGNNCC 2 cut(s) 289, 649
NsiI ATGCAT 1 cut(s) 778
NspI RCATGY 2 cut(s) 796, 808
PciI ACATGT 1 cut(s) 792
PciSI GCTCTTC 1 cut(s) 89
PctI GAATGC 1 cut(s) 646
PfeI GAWTC 3 cut(s) 468, 845, 865
PkrI GCNGC 6 cut(s) 287, 394, 456, 571, 706, 907
PleI GAGTC 2 cut(s) 344, 409
PpsI GAGTC 2 cut(s) 344, 409
PscI ACATGT 1 cut(s) 792
Psp6I CCWGG 1 cut(s) 673
PspFI CCCAGC 1 cut(s) 507
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 2 cut(s) 289, 649
PstI CTGCAG 1 cut(s) 456
PsuI RGATCY 2 cut(s) 98, 363
RsaI GTAC 2 cut(s) 484, 985
RsaNI GTAC 2 cut(s) 483, 984
RseI CAYNNNNRTG 1 cut(s) 951
SalI GTCGAC 1 cut(s) 755
SapI GCTCTTC 1 cut(s) 89
SaqAI TTAA 2 cut(s) 474, 687
SatI GCNGC 6 cut(s) 286, 393, 455, 570, 705, 906
Sau3AI GATC 6 cut(s) 66, 98, 150, 363, 595, 738
ScaI AGTACT 1 cut(s) 985
SchI GAGTC 2 cut(s) 345, 410
ScrFI CCNGG 5 cut(s) 128, 129, 146, 218, 675
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 3 cut(s) 411, 785, 946
SfcI CTRYAG 2 cut(s) 88, 452
SmaI CCCGGG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 951
SsiI CCGC 6 cut(s) 285, 291, 390, 393, 602, 704
SspI AATATT 1 cut(s) 17
StyD4I CCNGG 5 cut(s) 126, 127, 144, 216, 673
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 2 cut(s) 627, 898
TaiI ACGT 1 cut(s) 138
TaqI TCGA 4 cut(s) 444, 666, 756, 891
TatI WGTACW 1 cut(s) 983
TauI GCSGC 3 cut(s) 288, 395, 707
TfiI GAWTC 3 cut(s) 468, 845, 865
Tru1I TTAA 2 cut(s) 474, 687
Tru9I TTAA 2 cut(s) 474, 687
TscAI CASTG 1 cut(s) 485
TseI GCWGC 3 cut(s) 454, 569, 905
TspDTI ATGAA 5 cut(s) 196, 428, 518, 837, 907
TspGWI ACGGA 1 cut(s) 672
TspMI CCCGGG 1 cut(s) 127
TspRI CASTG 1 cut(s) 485
XceI RCATGY 2 cut(s) 796, 808
XmaI CCCGGG 1 cut(s) 127
XmiI GTMKAC 2 cut(s) 756, 963
ZrmI AGTACT 1 cut(s) 985
Zsp2I ATGCAT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.