Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Reverse (-)

32537751 .. 32538887

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38021.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTGTTCGGTTGGAGAAGACAAGAAAGTGAAAATGGAGAAGAAGGTGATGGAGTGTCTGGAGCTGAGTCAGGACGAGTCAGAGGCCGTGTCGAGAGTCGTGGTTCCGGCTCAGCGGCCCGGCGAGGCGAGCATATACGATATCTTCTCTCTTAGAGGCATCCGGGTCGACTGGGCCGAACCGGGACTCGTCGTCTGTACTCTCAAGGTCCCTCCCCGCCTCACCGATTGTGCAACTGTTGTGTGTATGCTACCAATACTCTTGACCTGGGATGAAGATGGATCATATCAGAAGGAATCCGAAATCGCCGTTAAGATTCTTGGTATGTTGGTTACTGGATTCGACACAGTTAGTGCTGCACTGACTTTTATTGTCAAGTATCTTGCCGACTTTCCTCGTATCTATGACGCAGTTTACAAAGAGCAAACGGAGATTGTAAATTCAAAAACCATTGGGAAGCCGTTGAAATGGGAAGACCTTCAGAAGATGAAATACTCGTGGAATGTAGCTCAAGAAGTGACAAGGATGACACCACCTGTTCAAGGAAACTTCAGGGAAGCTTTAACAGATTTTGTTTACCATGGTTTCACCATTCCAAAAGGGTGGAAGTTGTTTTTTGGAGTGCAAACTGGACACACAAGAGCGCCGATTGTTTCCCTGAGCCGGAGAAGTTTGACTCGTCAAGATTCGAAGGAAAGGGACCAGCACCTTACACATTTGTTCCATTTGGTGGAGGACCTAGAATGTGTCCAGGGAATCAGTACGCTCGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

258

Amino Acids

29.08

Weight (kDa)

6.01

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	95 - 208	4.3e-19	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	730
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	2 cut(s)	115, 217
AclWI	GGATC	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	2 cut(s)	464, 535
AfaI	GTAC	2 cut(s)	199, 763
AfiI	CCNNNNNNNGG	3 cut(s)	542, 663, 730
AgsI	TTSAA	3 cut(s)	444, 466, 542
AhdI	GACNNNNNGTC	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	266, 750
AluBI	AGCT	3 cut(s)	64, 509, 560
AluI	AGCT	3 cut(s)	64, 509, 560
AlwI	GGATC	1 cut(s)	289
Ama87I	CYCGRG	1 cut(s)	767
AoxI	GGCC	3 cut(s)	84, 116, 174
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	439
Asp700I	GAANNNNTTC	1 cut(s)	477
AspLEI	GCGC	1 cut(s)	646
AspS9I	GGNCC	5 cut(s)	117, 174, 208, 700, 736
AsuC2I	CCSGG	3 cut(s)	120, 164, 183
AsuHPI	GGTGA	3 cut(s)	58, 214, 580
AsuII	TTCGAA	1 cut(s)	689
AvaI	CYCGRG	1 cut(s)	767
AvaII	GGWCC	3 cut(s)	208, 700, 736
BarI	GAAGNNNNNNTAC	2 cut(s)	476, 508
BauI	CACGAG	1 cut(s)	496
BbsI	GAAGAC	2 cut(s)	24, 480
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	2 cut(s)	43, 272
BceAI	ACGGC	3 cut(s)	71, 293, 445
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	2 cut(s)	268, 752
BcnI	CCSGG	3 cut(s)	120, 164, 183
BfaI	CTAG	1 cut(s)	740
BfoI	RGCGCY	1 cut(s)	647
BisI	GCNGC	2 cut(s)	116, 357
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	2 cut(s)	117, 358
Bme1390I	CCNGG	5 cut(s)	120, 164, 183, 268, 752
Bme18I	GGWCC	3 cut(s)	208, 700, 736
BmeRI	GACNNNNNGTC	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	767
BmgT120I	GGNCC	5 cut(s)	117, 174, 208, 700, 736
BmiI	GGNNCC	3 cut(s)	105, 210, 701
BmrFI	CCNGG	5 cut(s)	120, 164, 183, 268, 752
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	181
BpiI	GAAGAC	2 cut(s)	24, 480
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	659
Bpu1102I	GCTNAGC	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	689
BpuEI	CTTGAG	2 cut(s)	188, 495
BpuMI	CCSGG	3 cut(s)	120, 164, 183
BsaJI	CCNNGG	3 cut(s)	267, 580, 751
Bsc4I	CCNNNNNNNGG	3 cut(s)	542, 663, 730
Bse1I	ACTGG	3 cut(s)	176, 340, 634
BseBI	CCWGG	2 cut(s)	268, 752
BseDI	CCNNGG	3 cut(s)	267, 580, 751
BseGI	GGATG	3 cut(s)	159, 277, 531
BseLI	CCNNNNNNNGG	3 cut(s)	542, 663, 730
BseMII	CTCAG	3 cut(s)	56, 125, 650
BseNI	ACTGG	3 cut(s)	176, 340, 634
BseXI	GCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	3 cut(s)	86, 118, 176
BsiHKCI	CYCGRG	1 cut(s)	767
BsiSI	CCGG	5 cut(s)	107, 120, 163, 182, 664
BslFI	GGGAC	3 cut(s)	194, 198, 713
BslI	CCNNNNNNNGG	3 cut(s)	542, 663, 730
BsmFI	GGGAC	3 cut(s)	194, 198, 713
BsnI	GGCC	3 cut(s)	86, 118, 176
BsoBI	CYCGRG	1 cut(s)	767
Bsp119I	TTCGAA	1 cut(s)	689
Bsp143I	GATC	1 cut(s)	281
Bsp1720I	GCTNAGC	1 cut(s)	111
Bsp19I	CCATGG	1 cut(s)	580
BspACI	CCGC	2 cut(s)	115, 217
BspANI	GGCC	3 cut(s)	86, 118, 176
BspCNI	CTCAG	3 cut(s)	57, 124, 651
BspLI	GGNNCC	3 cut(s)	105, 210, 701
BspPI	GGATC	1 cut(s)	289
BspT104I	TTCGAA	1 cut(s)	689
BsrI	ACTGG	3 cut(s)	176, 340, 634
BssECI	CCNNGG	3 cut(s)	267, 580, 751
BssMI	GATC	1 cut(s)	281
BssSI	CACGAG	1 cut(s)	496
BssT1I	CCWWGG	1 cut(s)	580
Bst2BI	CACGAG	1 cut(s)	496
Bst2UI	CCWGG	2 cut(s)	268, 752
Bst4CI	ACNGT	2 cut(s)	238, 349
BstBI	TTCGAA	1 cut(s)	689
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	4 cut(s)	65, 111, 152, 659
BstDSI	CCRYGG	1 cut(s)	580
BstENI	CCTNNNNNAGG	1 cut(s)	540
BstF5I	GGATG	3 cut(s)	159, 277, 531
BstH2I	RGCGCY	1 cut(s)	647
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	2 cut(s)	268, 752
BstSCI	CCNGG	5 cut(s)	118, 162, 181, 266, 750
BstV1I	GCAGC	1 cut(s)	343
BstV2I	GAAGAC	2 cut(s)	24, 480
BstXI	CCANNNNNNTGG	1 cut(s)	603
BsuRI	GGCC	3 cut(s)	86, 118, 176
BtgI	CCRYGG	1 cut(s)	580
BtsCI	GGATG	3 cut(s)	159, 277, 531
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	646
Cfr13I	GGNCC	5 cut(s)	117, 174, 208, 700, 736
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	198, 762
CviAII	CATG	1 cut(s)	581
CviJI	RGCY	9 cut(s)	64, 86, 110, 118, 176, 460, 509, 560, 663
CviKI_1	RGCY	9 cut(s)	64, 86, 110, 118, 176, 460, 509, 560, 663
CviQI	GTAC	2 cut(s)	198, 762
DdeI	CTNAG	4 cut(s)	65, 111, 152, 659
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
DriI	GACNNNNNGTC	1 cut(s)	191
Eam1105I	GACNNNNNGTC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	580
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	3 cut(s)	208, 700, 736
Eco57I	CTGAAG	2 cut(s)	464, 535
Eco88I	CYCGRG	1 cut(s)	767
EcoNI	CCTNNNNNAGG	1 cut(s)	540
EcoO109I	RGGNCCY	2 cut(s)	208, 736
EcoRII	CCWGG	2 cut(s)	266, 750
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	1 cut(s)	584
FaiI	YATR	7 cut(s)	134, 136, 248, 286, 326, 405, 582
FaqI	GGGAC	3 cut(s)	194, 198, 713
FatI	CATG	1 cut(s)	580
FauI	CCCGC	1 cut(s)	224
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	116, 357
FokI	GGATG	3 cut(s)	146, 284, 538
Fsp4HI	GCNGC	2 cut(s)	116, 357
FspBI	CTAG	1 cut(s)	740
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	2 cut(s)	116, 357
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	647
HaeIII	GGCC	3 cut(s)	86, 118, 176
HapII	CCGG	5 cut(s)	107, 120, 163, 182, 664
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	1 cut(s)	646
Hin1II	CATG	1 cut(s)	584
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	558
HpaII	CCGG	5 cut(s)	107, 120, 163, 182, 664
HphI	GGTGA	3 cut(s)	58, 214, 580
Hpy166II	GTNNAC	3 cut(s)	169, 415, 577
Hpy188I	TCNGA	4 cut(s)	82, 291, 301, 483
Hpy188III	TCNNGA	6 cut(s)	59, 71, 93, 262, 512, 683
Hpy8I	GTNNAC	3 cut(s)	169, 415, 577
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	37, 286, 488, 685
HpyCH4III	ACNGT	2 cut(s)	238, 349
HpyCH4V	TGCA	3 cut(s)	233, 359, 625
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	4 cut(s)	65, 111, 152, 659
Hsp92II	CATG	1 cut(s)	584
HspAI	GCGC	1 cut(s)	644
Kzo9I	GATC	1 cut(s)	281
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	1 cut(s)	740
MaeIII	GTNAC	2 cut(s)	331, 517
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	6 cut(s)	29, 52, 136, 287, 485, 496
MluCI	AATT	1 cut(s)	439
MlyI	GAGTC	5 cut(s)	76, 86, 105, 180, 670
MnlI	CCTC	7 cut(s)	76, 118, 149, 222, 230, 405, 727
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	2 cut(s)	312, 563
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	5 cut(s)	107, 120, 163, 182, 664
MspR9I	CCNGG	5 cut(s)	120, 164, 183, 268, 752
MvaI	CCWGG	2 cut(s)	268, 752
MwoI	GCNNNNNNNGC	1 cut(s)	129
NciI	CCSGG	3 cut(s)	120, 164, 183
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	1 cut(s)	584
NlaIV	GGNNCC	3 cut(s)	105, 210, 701
NmuCI	GTSAC	1 cut(s)	517
NspV	TTCGAA	1 cut(s)	689
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	5 cut(s)	296, 316, 339, 686, 756
PflMI	CCANNNNNTGG	1 cut(s)	730
PkrI	GCNGC	2 cut(s)	117, 358
PleI	GAGTC	5 cut(s)	75, 85, 104, 180, 670
PpsI	GAGTC	5 cut(s)	75, 85, 104, 180, 670
PpuMI	RGGWCCY	2 cut(s)	208, 736
Psp5II	RGGWCCY	2 cut(s)	208, 736
Psp6I	CCWGG	2 cut(s)	266, 750
PspGI	CCWGG	2 cut(s)	266, 750
PspN4I	GGNNCC	3 cut(s)	105, 210, 701
PspPI	GGNCC	5 cut(s)	117, 174, 208, 700, 736
PspPPI	RGGWCCY	2 cut(s)	208, 736
RsaI	GTAC	2 cut(s)	199, 763
RsaNI	GTAC	2 cut(s)	198, 762
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	312, 563
SatI	GCNGC	2 cut(s)	116, 357
Sau3AI	GATC	1 cut(s)	281
Sau96I	GGNCC	5 cut(s)	117, 174, 208, 700, 736
SchI	GAGTC	5 cut(s)	76, 86, 105, 180, 670
ScrFI	CCNGG	5 cut(s)	120, 164, 183, 268, 752
SfaNI	GCATC	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	689
SinI	GGWCC	3 cut(s)	208, 700, 736
SmlI	CTYRAG	2 cut(s)	203, 510
SmoI	CTYRAG	2 cut(s)	203, 510
Sse9I	AATT	1 cut(s)	439
SsiI	CCGC	2 cut(s)	115, 217
SspMI	CTAG	1 cut(s)	740
StyD4I	CCNGG	5 cut(s)	118, 162, 181, 266, 750
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	2 cut(s)	238, 349
TaqI	TCGA	4 cut(s)	92, 168, 342, 689
TasI	AATT	1 cut(s)	439
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	5 cut(s)	296, 316, 339, 686, 756
Tru1I	TTAA	2 cut(s)	312, 563
Tru9I	TTAA	2 cut(s)	312, 563
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	2 cut(s)	288, 503
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	1 cut(s)	366
Van91I	CCANNNNNTGG	1 cut(s)	730
VpaK11BI	GGWCC	3 cut(s)	208, 700, 736
XagI	CCTNNNNNAGG	1 cut(s)	540
XapI	RAATTY	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.