Rh7CG004700

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000192
Physical Location & Seq
Reverse (-)
409348 .. 410661
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG004700.1

Sequence Viewer

Length: 1182 bp
ATGGAAATGGAGATGCTTATCCTTTCTGTGCTAGTTCTCTTTGTTTCTCTCTACTATCTTTTTCGTATGTTGAATAGAAATGCTAGCAAAAATGAAGTTCATCATCATAATCATCAGCTTCAGCTCCCACCAGGAAGCTCAGGTTGGCCCATCATCGGGGAAGGCCTTGCTTTTTTGATGACAGCCAAAAGGGGTGTACCGGAGAAGTTCATAGGAGAAAGGAGGATCAAGTACTCATCATCAGATTCCAAAAGCAGCAGCAGCAGCTGCAAGGTGTTCACCACATCGTTGCTGCGTGAATCCATGGCGGTGTTATGTACTGCTGCTGGAAACAAGTTCCTGTTTTCAAACGAGAACAAACTCGTCAAGTCATGGTGGCCTGCTAACATCGACACCATCTTTGCCAGCTCCAACAAAACAAACACCGCCGAGGAGTCCATTCGTCACCGCAAAGTTCTGTCTCCGTTTCTCGGCCCCGATTCTCTCCGAAAGTACGTAGGGATCATGGATACTGTCACCAAACGTCATCTGGACCTGTTCTGGTCGGATAAAAAACAAGTCAAAGTTCTAGCCCTAACAAAGATGCACACCTTCACATTGGTGTGTAAAATCTTCTTAAACGTGGAGGATCTAGCAGTGATTGCCAAACTAGAGGAGCCAATTCAGCATATTGCAGCAGGCTTCATTTCATTGCCCATAAATCTGCCTGGCACAGCATTCAACCGAGCCATCCAAGCATCCAAGCAGGTCAGGAAGGACCTTGAAAATATGGTTAAACAGAGGAGAATAGATTTAGATCTGTCTGTGGCAGCAGATGAAAATAATAATAATCATGATTTGATGTCTAAGTTGCTGCTGGAGAGATATAGCGACGGCCAACAAATGAAGGAAACCGACATCGCCAACAAGTTAAATGGTCTACTCATTGCTGCTTATGACAATGTATTCATCACCTTGTGTTCTATCATCATGTATCTATCGGAGCTTCCTACAGTTTATGATGCCGTCCTCAAAGGTACTTACAGATTAAAGCATTGTTTTTGTTTTTTGGACAATCTAGCTACATATTTCAAGCATAATTTAATCCCCTATCCATCATATCTATTATACTTCTATCCTCCTATTTCAATTTCCAAACTGATATATCTCCGGCTGAATAAAATTAAGATGTCTACTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

393

Amino Acids

44.79

Weight (kDa)

9.32

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 91 - 336 9.2e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 736
AccI GTMKAC 2 cut(s) 919, 1172
AciI CCGC 3 cut(s) 308, 426, 448
AclWI GGATC 3 cut(s) 233, 509, 636
AcoI YGGCCR 1 cut(s) 874
AcuI CTGAAG 1 cut(s) 104
AdeI CACNNNGTG 1 cut(s) 957
AfaI GTAC 5 cut(s) 198, 233, 319, 494, 1018
AfiI CCNNNNNNNGG 3 cut(s) 155, 156, 470
AgsI TTSAA 6 cut(s) 73, 348, 721, 764, 1072, 1128
AjnI CCWGG 2 cut(s) 130, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
AleI CACNNNNGTG 1 cut(s) 599
AluBI AGCT 7 cut(s) 118, 124, 138, 267, 408, 985, 1061
AluI AGCT 7 cut(s) 118, 124, 138, 267, 408, 985, 1061
Alw26I GTCTC 1 cut(s) 465
AlwI GGATC 3 cut(s) 233, 509, 636
AlwNI CAGNNNCTG 1 cut(s) 267
AoxI GGCC 5 cut(s) 146, 163, 377, 472, 874
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AspS9I GGNCC 4 cut(s) 147, 473, 532, 757
AsuHPI GGTGA 4 cut(s) 271, 437, 508, 943
AsuNHI GCTAGC 1 cut(s) 83
AvaII GGWCC 2 cut(s) 532, 757
BccI CCATC 4 cut(s) 158, 404, 737, 1102
BceAI ACGGC 2 cut(s) 889, 989
BciT130I CCWGG 2 cut(s) 132, 708
BciVI GTATCC 1 cut(s) 502
BcoDI GTCTC 1 cut(s) 465
BfaI CTAG 6 cut(s) 32, 84, 569, 632, 650, 1058
BfmI CTRYAG 1 cut(s) 990
BfuAI ACCTGC 1 cut(s) 736
BfuI GTATCC 1 cut(s) 502
BglII AGATCT 1 cut(s) 796
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 2 cut(s) 132, 708
Bme18I GGWCC 2 cut(s) 532, 757
BmgT120I GGNCC 4 cut(s) 147, 473, 532, 757
BmiI GGNNCC 2 cut(s) 475, 657
BmrFI CCNGG 2 cut(s) 132, 708
BmsI GCATC 4 cut(s) 3, 573, 746, 991
BmtI GCTAGC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 878
Bpu10I CCTNAGC 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 496
BsaBI GATNNNNATC 2 cut(s) 17, 795
BsaJI CCNNGG 2 cut(s) 303, 429
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 156, 470
Bse3DI GCAATG 2 cut(s) 689, 924
Bse8I GATNNNNATC 2 cut(s) 17, 795
BseBI CCWGG 2 cut(s) 132, 708
BseDI CCNNGG 2 cut(s) 303, 429
BseGI GGATG 2 cut(s) 729, 737
BseJI GATNNNNATC 2 cut(s) 17, 795
BseLI CCNNNNNNNGG 3 cut(s) 155, 156, 470
BseMI GCAATG 2 cut(s) 689, 924
BseMII CTCAG 1 cut(s) 153
BseRI GAGGAG 3 cut(s) 446, 668, 796
BshFI GGCC 5 cut(s) 148, 165, 379, 474, 876
BsiSI CCGG 2 cut(s) 200, 1150
BslI CCNNNNNNNGG 3 cut(s) 155, 156, 470
BsmAI GTCTC 1 cut(s) 465
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 5 cut(s) 148, 165, 379, 474, 876
Bsp143I GATC 4 cut(s) 225, 501, 628, 796
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 3 cut(s) 308, 426, 448
BspANI GGCC 5 cut(s) 148, 165, 379, 474, 876
BspCNI CTCAG 1 cut(s) 152
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 2 cut(s) 475, 657
BspMI ACCTGC 1 cut(s) 736
BspOI GCTAGC 1 cut(s) 87
BspPI GGATC 3 cut(s) 233, 509, 636
BsrDI GCAATG 2 cut(s) 689, 924
BssECI CCNNGG 2 cut(s) 303, 429
BssMI GATC 4 cut(s) 225, 501, 628, 796
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 2 cut(s) 132, 708
Bst4CI ACNGT 3 cut(s) 514, 994, 1177
BstAPI GCANNNNNTGC 2 cut(s) 267, 641
BstBAI YACGTR 1 cut(s) 496
BstC8I GCNNGC 4 cut(s) 85, 381, 406, 679
BstDEI CTNAG 2 cut(s) 139, 846
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 729, 737
BstKTI GATC 4 cut(s) 228, 504, 631, 799
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 4 cut(s) 225, 501, 628, 796
BstMWI GCNNNNNNNGC 6 cut(s) 261, 264, 267, 641, 664, 734
BstNI CCWGG 2 cut(s) 132, 708
BstSCI CCNGG 2 cut(s) 130, 706
BstSFI CTRYAG 1 cut(s) 990
BstSNI TACGTA 1 cut(s) 496
BstX2I RGATCY 2 cut(s) 628, 796
BstYI RGATCY 2 cut(s) 628, 796
BsuI GTATCC 1 cut(s) 502
BsuRI GGCC 5 cut(s) 148, 165, 379, 474, 876
BtgI CCRYGG 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 883
BtsCI GGATG 2 cut(s) 729, 737
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 1 cut(s) 642
BveI ACCTGC 1 cut(s) 736
Cac8I GCNNGC 4 cut(s) 85, 381, 406, 679
CaiI CAGNNNCTG 1 cut(s) 267
CciI TCATGA 1 cut(s) 832
Cfr13I GGNCC 4 cut(s) 147, 473, 532, 757
Csp6I GTAC 5 cut(s) 197, 232, 318, 493, 1017
CviAII CATG 5 cut(s) 304, 372, 505, 833, 970
CviQI GTAC 5 cut(s) 197, 232, 318, 493, 1017
DdeI CTNAG 2 cut(s) 139, 846
DpnI GATC 4 cut(s) 227, 503, 630, 798
DpnII GATC 4 cut(s) 225, 501, 628, 796
DraIII CACNNNGTG 1 cut(s) 957
EaeI YGGCCR 1 cut(s) 874
Eco105I TACGTA 1 cut(s) 496
Eco130I CCWWGG 1 cut(s) 303
Eco147I AGGCCT 1 cut(s) 165
Eco47I GGWCC 2 cut(s) 532, 757
Eco57I CTGAAG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 757
EcoRII CCWGG 2 cut(s) 130, 706
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 5 cut(s) 307, 375, 508, 836, 973
FatI CATG 5 cut(s) 303, 371, 504, 832, 969
FblI GTMKAC 2 cut(s) 919, 1172
FokI GGATG 2 cut(s) 716, 724
FspBI CTAG 6 cut(s) 32, 84, 569, 632, 650, 1058
GsuI CTGGAG 1 cut(s) 878
HaeIII GGCC 5 cut(s) 148, 165, 379, 474, 876
HapII CCGG 2 cut(s) 200, 1150
Hin1II CATG 5 cut(s) 307, 375, 508, 836, 973
HinfI GANTC 4 cut(s) 245, 299, 434, 479
HpaII CCGG 2 cut(s) 200, 1150
HphI GGTGA 4 cut(s) 271, 437, 508, 943
Hpy166II GTNNAC 4 cut(s) 197, 279, 920, 1173
Hpy188I TCNGA 4 cut(s) 244, 488, 547, 982
Hpy188III TCNNGA 3 cut(s) 530, 751, 833
Hpy8I GTNNAC 4 cut(s) 197, 279, 920, 1173
Hpy99I CGWCG 1 cut(s) 875
HpyAV CCTTC 4 cut(s) 155, 601, 748, 880
HpyCH4III ACNGT 3 cut(s) 514, 994, 1177
HpyCH4IV ACGT 3 cut(s) 495, 523, 621
HpyCH4V TGCA 3 cut(s) 270, 586, 674
HpyF10VI GCNNNNNNNGC 6 cut(s) 261, 264, 267, 641, 664, 734
HpyF3I CTNAG 2 cut(s) 139, 846
HpySE526I ACGT 3 cut(s) 495, 523, 621
Hsp92II CATG 5 cut(s) 307, 375, 508, 836, 973
Kzo9I GATC 4 cut(s) 225, 501, 628, 796
LmnI GCTCC 4 cut(s) 129, 413, 655, 982
LweI GCATC 4 cut(s) 3, 573, 746, 991
MaeI CTAG 6 cut(s) 32, 84, 569, 632, 650, 1058
MaeII ACGT 3 cut(s) 495, 523, 621
MaeIII GTNAC 2 cut(s) 443, 514
MalI GATC 4 cut(s) 227, 503, 630, 798
MboI GATC 4 cut(s) 225, 501, 628, 796
MboII GAAGA 1 cut(s) 604
MflI RGATCY 2 cut(s) 628, 796
MluCI AATT 4 cut(s) 660, 1078, 1128, 1161
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 2 cut(s) 435, 525
MnlI CCTC 7 cut(s) 216, 424, 619, 646, 774, 1019, 1128
MseI TTAA 6 cut(s) 617, 774, 911, 1028, 1082, 1164
MslI CAYNNNNRTG 3 cut(s) 308, 599, 601
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 2 cut(s) 200, 1150
MspR9I CCNGG 2 cut(s) 132, 708
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 2 cut(s) 132, 708
MwoI GCNNNNNNNGC 6 cut(s) 261, 264, 267, 641, 664, 734
NcoI CCATGG 1 cut(s) 303
NdeII GATC 4 cut(s) 225, 501, 628, 796
NheI GCTAGC 1 cut(s) 83
NlaIII CATG 5 cut(s) 307, 375, 508, 836, 973
NlaIV GGNNCC 2 cut(s) 475, 657
NmeAIII GCCGAG 2 cut(s) 450, 454
NmuCI GTSAC 2 cut(s) 443, 514
OliI CACNNNNGTG 1 cut(s) 599
PagI TCATGA 1 cut(s) 832
PceI AGGCCT 1 cut(s) 165
PctI GAATGC 1 cut(s) 716
PfeI GAWTC 3 cut(s) 245, 299, 479
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
Ppu21I YACGTR 1 cut(s) 496
PpuMI RGGWCCY 1 cut(s) 757
Psp5II RGGWCCY 1 cut(s) 757
Psp6I CCWGG 2 cut(s) 130, 706
PspGI CCWGG 2 cut(s) 130, 706
PspN4I GGNNCC 2 cut(s) 475, 657
PspPI GGNCC 4 cut(s) 147, 473, 532, 757
PspPPI RGGWCCY 1 cut(s) 757
PstNI CAGNNNCTG 1 cut(s) 267
PsuI RGATCY 2 cut(s) 628, 796
PvuII CAGCTG 1 cut(s) 267
RsaI GTAC 5 cut(s) 198, 233, 319, 494, 1018
RsaNI GTAC 5 cut(s) 197, 232, 318, 493, 1017
RseI CAYNNNNRTG 3 cut(s) 308, 599, 601
SaqAI TTAA 6 cut(s) 617, 774, 911, 1028, 1082, 1164
Sau3AI GATC 4 cut(s) 225, 501, 628, 796
Sau96I GGNCC 4 cut(s) 147, 473, 532, 757
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 2 cut(s) 132, 708
SfaNI GCATC 4 cut(s) 3, 573, 746, 991
SfcI CTRYAG 1 cut(s) 990
SinI GGWCC 2 cut(s) 532, 757
SmiMI CAYNNNNRTG 3 cut(s) 308, 599, 601
SnaBI TACGTA 1 cut(s) 496
Sse9I AATT 4 cut(s) 660, 1078, 1128, 1161
SseBI AGGCCT 1 cut(s) 165
SsiI CCGC 3 cut(s) 308, 426, 448
SspMI CTAG 6 cut(s) 32, 84, 569, 632, 650, 1058
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 130, 706
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 3 cut(s) 514, 994, 1177
TaiI ACGT 3 cut(s) 498, 526, 624
TaqI TCGA 1 cut(s) 390
TasI AATT 4 cut(s) 660, 1078, 1128, 1161
TatI WGTACW 2 cut(s) 231, 317
TfiI GAWTC 3 cut(s) 245, 299, 479
Tru1I TTAA 6 cut(s) 617, 774, 911, 1028, 1082, 1164
Tru9I TTAA 6 cut(s) 617, 774, 911, 1028, 1082, 1164
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 2 cut(s) 443, 514
Tsp45I GTSAC 2 cut(s) 443, 514
TspDTI ATGAA 8 cut(s) 89, 108, 199, 673, 678, 831, 899, 937
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 1 cut(s) 642
VpaK11BI GGWCC 2 cut(s) 532, 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmiI GTMKAC 2 cut(s) 919, 1172
XspI CTAG 6 cut(s) 32, 84, 569, 632, 650, 1058
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.