Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Forward (+)

20891147 .. 20951634

Gene Structure 60488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGGTGATGGAGCAATATTATTTCCAACCTATCACCCTCCTCTTGGGCTTTGTTTCCTTTCTGGCAGTCTCTCTCTTGGTGCTTTTCTACAGGCACAGATCCCAGTTCACCGGCAACAACCTCCCGCCGGGAAGAGTCGGTTACCCGGTGATCGGGGAGACCTACGAGTTCCTCTCTTCGGCCCGGAAAGGCCACCCCGAAAAATTTATCTCCGACCGGGTAAACAAGTACTCGTCTCAAATTTTCAAGACCTCCTTCATTGGGGAGAAAACTGCCTTCTTCTGCGGCAACACCTGCAACAAGATCTTGTTCTCCAAGGAGAACAAGTTTGTGACTGTATGGTGGCCTAGTACCGTCGACAAGATCTTCCCTTCTTCGACTGAGACTTCGTCGTCCGTAGAAGAGGGCAGGAAGATGAGAAAGATGCTTCCTAACTTCTTGAAGCTCGACGCTCTGCAACGCTACTTTACCACCATGGACCAGTGTGCTCAATCACACTTCGCTGATTGCTGGGAAAACCAAAACGAAGTTAAAGTCTTTCCCCTCGTCAAGGACTATACCTTCAAGCTTGCTGCACGACTGTTTGTTAGCCTTGAGGATCAAAAGGACGTAGAAAAACTTAGCAAACCATTCCATCTAATGAATGCCGGAATCATGTCGATGCCCATCGACTTCCCTGGGACTCCGTTCAACAAAGCCATTAAGGCGGCCAACTTGATCCAGAAGGATATGTACAAGATCATCAAGCAGAGGAAGGTTGATTTAGCGGAGGGCAAGGCGTCACCGACACAAGACATATTGTCACACATGCTCTCCACTTGCGATGAGCATGGAACATATCTGAAGGAGTCCGATATCGCCGATAAAATTCTTGGAATGTTGGTTGCCGGCTTTGACACACTGACTGTTGCATTGACATTCATTGTAAAGTATATGGGCGAGCTTCCACATACCTATGACACTGTCTACAAAGAGCAAATGGAGATCGCAAATTCAAAGGCCCCAGGGGAGTCGTTGAAGTGGGATGACCTTCAGAAGATGAAGTACTCATGGAATGTAGCACAAGAAGTGCTGAGATTGGCACCGCCTGTTCAAGGAGCCTTCAGGGTGGCATTGGCCGATTTTGCCATCAAGGGTTTTAAAATTTCAGATGGGTGGAAGTTGTACTGGAGCCCACTTTCGACACACAAGAATGCCGATGTCTTCCCGGAACCGGAGAAATTTGACCCGTCAAGATTTGAAGGAAAGGGACCTGCACCTTACATGTATGTTCCGTTCGGCGGAGGCCCGAGAATGTGTCCAGGAAATGAGTACTCCCGAGTGGTAATACTGGTGTTCATGCATAACTTGGTGAAGAGGTTCAAGTGGGAAAAAGTTTTTCCTAATGAGAAGACAACCATTGCTCCTTTTCCCATCCCCACCAAAGGGCTTCCCGTCCGCCTTTTTCATCACCACAGATCATCCGCTCAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

491

Amino Acids

56.11

Weight (kDa)

9.14

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	42 - 458	5.4e-53	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
AasI	GACNNNNNNGTC	1 cut(s)	391
Acc36I	ACCTGC	2 cut(s)	302, 1261
AccB1I	GGYRCC	1 cut(s)	1081
AccBSI	CCGCTC	1 cut(s)	1466
AccI	GTMKAC	2 cut(s)	357, 966
AciI	CCGC	8 cut(s)	125, 285, 707, 767, 1085, 1281, 1438, 1464
AclWI	GGATC	3 cut(s)	93, 606, 712
AcoI	YGGCCR	2 cut(s)	708, 1116
AcsI	RAATTY	6 cut(s)	203, 240, 867, 991, 1143, 1220
AcuI	CTGAAG	3 cut(s)	863, 1016, 1087
AcyI	GRCGYC	1 cut(s)	779
AfaI	GTAC	6 cut(s)	230, 352, 734, 1046, 1166, 1313
AflIII	ACRYGT	1 cut(s)	1263
AgsI	TTSAA	9 cut(s)	247, 442, 565, 691, 996, 1018, 1094, 1241, 1363
AhdI	GACNNNNNGTC	1 cut(s)	799
AjnI	CCWGG	3 cut(s)	676, 1003, 1300
AluBI	AGCT	3 cut(s)	445, 568, 943
AluI	AGCT	3 cut(s)	445, 568, 943
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	4 cut(s)	73, 152, 240, 377
AlwI	GGATC	3 cut(s)	93, 606, 712
Ama87I	CYCGRG	2 cut(s)	1288, 1317
AoxI	GGCC	7 cut(s)	180, 190, 344, 708, 999, 1116, 1285
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	6 cut(s)	203, 240, 867, 991, 1143, 1220
ArsI	GACNNNNNNTTYG	4 cut(s)	370, 402, 519, 551
Asp700I	GAANNNNTTC	1 cut(s)	1358
AspS9I	GGNCC	5 cut(s)	181, 478, 1000, 1250, 1286
AsuC2I	CCSGG	5 cut(s)	129, 146, 184, 218, 1208
AsuHPI	GGTGA	7 cut(s)	16, 25, 100, 160, 774, 1363, 1442
AvaI	CYCGRG	2 cut(s)	1288, 1317
AvaII	GGWCC	2 cut(s)	478, 1250
BanI	GGYRCC	1 cut(s)	1081
BanII	GRGCYC	1 cut(s)	1175
BarI	GAAGNNNNNNTAC	4 cut(s)	716, 748, 1028, 1060
BbsI	GAAGAC	2 cut(s)	1195, 1397
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	5 cut(s)	642, 674, 1136, 1145, 1421
BciT130I	CCWGG	3 cut(s)	678, 1005, 1302
BcnI	CCSGG	5 cut(s)	129, 146, 184, 218, 1208
BcoDI	GTCTC	4 cut(s)	73, 152, 240, 377
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	88
BfuAI	ACCTGC	2 cut(s)	302, 1261
BglI	GCCNNNNNGGC	1 cut(s)	704
BglII	AGATCT	2 cut(s)	303, 363
BisI	GCNGC	3 cut(s)	286, 573, 708
BlpI	GCTNAGC	1 cut(s)	1467
BlsI	GCNGC	3 cut(s)	287, 574, 709
BmcAI	AGTACT	3 cut(s)	230, 1046, 1313
Bme1390I	CCNGG	8 cut(s)	129, 146, 184, 218, 678, 1005, 1208, 1302
Bme18I	GGWCC	2 cut(s)	478, 1250
BmeRI	GACNNNNNGTC	1 cut(s)	799
BmeT110I	CYCGRG	2 cut(s)	1288, 1317
BmgT120I	GGNCC	5 cut(s)	181, 478, 1000, 1250, 1286
BmiI	GGNNCC	6 cut(s)	1002, 1083, 1099, 1172, 1212, 1251
BmrFI	CCNGG	8 cut(s)	129, 146, 184, 218, 678, 1005, 1208, 1302
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	2 cut(s)	414, 651
BmuI	ACTGGG	1 cut(s)	97
BpiI	GAAGAC	2 cut(s)	1195, 1397
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
BpmI	CTGGAG	1 cut(s)	1189
Bpu1102I	GCTNAGC	1 cut(s)	1467
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	5 cut(s)	129, 146, 184, 218, 1208
BsaBI	GATNNNNATC	1 cut(s)	665
BsaHI	GRCGYC	1 cut(s)	779
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	6 cut(s)	315, 474, 676, 677, 1003, 1004
BsaWI	WCCGGW	1 cut(s)	1213
BsaXI	ACNNNNNCTCC	6 cut(s)	311, 341, 797, 827, 1387, 1417
Bse118I	RCCGGY	2 cut(s)	110, 887
Bse1I	ACTGG	4 cut(s)	103, 481, 1172, 1335
Bse3DI	GCAATG	1 cut(s)	1398
Bse8I	GATNNNNATC	1 cut(s)	665
BseBI	CCWGG	3 cut(s)	678, 1005, 1302
BseDI	CCNNGG	6 cut(s)	315, 474, 676, 677, 1003, 1004
BseGI	GGATG	3 cut(s)	1030, 1413, 1460
BseJI	GATNNNNATC	1 cut(s)	665
BseMI	GCAATG	1 cut(s)	1398
BseMII	CTCAG	2 cut(s)	372, 1064
BseNI	ACTGG	4 cut(s)	103, 481, 1172, 1335
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	559
BseYI	CCCAGC	1 cut(s)	510
BsgI	GTGCAG	2 cut(s)	558, 1239
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	7 cut(s)	182, 192, 346, 710, 1001, 1118, 1287
BshNI	GGYRCC	1 cut(s)	1081
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	490
BsiHKCI	CYCGRG	2 cut(s)	1288, 1317
BsiSI	CCGG	9 cut(s)	111, 128, 146, 184, 217, 648, 888, 1208, 1214
BslFI	GGGAC	2 cut(s)	694, 1263
BsmAI	GTCTC	4 cut(s)	73, 152, 240, 377
BsmBI	CGTCTC	1 cut(s)	240
BsmFI	GGGAC	2 cut(s)	694, 1263
BsmI	GAATGC	2 cut(s)	649, 1198
BsnI	GGCC	7 cut(s)	182, 192, 346, 710, 1001, 1118, 1287
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	2 cut(s)	1288, 1317
Bsp1286I	GDGCHC	2 cut(s)	490, 1175
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	9 cut(s)	98, 150, 303, 363, 598, 717, 738, 984, 1457
Bsp1720I	GCTNAGC	1 cut(s)	1467
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	8 cut(s)	125, 285, 707, 767, 1085, 1281, 1438, 1464
BspANI	GGCC	7 cut(s)	182, 192, 346, 710, 1001, 1118, 1287
BspCNI	CTCAG	2 cut(s)	373, 1065
BspLI	GGNNCC	6 cut(s)	1002, 1083, 1099, 1172, 1212, 1251
BspMI	ACCTGC	2 cut(s)	302, 1261
BspPI	GGATC	3 cut(s)	93, 606, 712
BspT107I	GGYRCC	1 cut(s)	1081
BspTNI	GGTCTC	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	1466
BsrDI	GCAATG	1 cut(s)	1398
BsrFI	RCCGGY	2 cut(s)	110, 887
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	4 cut(s)	103, 481, 1172, 1335
BssAI	RCCGGY	2 cut(s)	110, 887
BssECI	CCNNGG	6 cut(s)	315, 474, 676, 677, 1003, 1004
BssMI	GATC	9 cut(s)	98, 150, 303, 363, 598, 717, 738, 984, 1457
BssNI	GRCGYC	1 cut(s)	779
BssT1I	CCWWGG	2 cut(s)	315, 474
Bst2UI	CCWGG	3 cut(s)	678, 1005, 1302
Bst4CI	ACNGT	5 cut(s)	337, 355, 582, 907, 964
Bst6I	CTCTTC	4 cut(s)	127, 181, 396, 1349
BstACI	GRCGYC	1 cut(s)	779
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstAUI	TGTACA	1 cut(s)	732
BstC8I	GCNNGC	3 cut(s)	570, 889, 941
BstDEI	CTNAG	4 cut(s)	381, 620, 1073, 1467
BstDSI	CCRYGG	1 cut(s)	474
BstEII	GGTNACC	1 cut(s)	140
BstENI	CCTNNNNNAGG	2 cut(s)	548, 1092
BstF5I	GGATG	3 cut(s)	1030, 1413, 1460
BstKTI	GATC	9 cut(s)	101, 153, 306, 366, 601, 720, 741, 987, 1460
BstMAI	GTCTC	4 cut(s)	73, 152, 240, 377
BstMBI	GATC	9 cut(s)	98, 150, 303, 363, 598, 717, 738, 984, 1457
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	3 cut(s)	294, 704, 1124
BstNI	CCWGG	3 cut(s)	678, 1005, 1302
BstNSI	RCATGY	2 cut(s)	811, 1267
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	8 cut(s)	127, 144, 182, 216, 676, 1003, 1206, 1300
BstSFI	CTRYAG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	559
BstV2I	GAAGAC	2 cut(s)	1195, 1397
BstX2I	RGATCY	3 cut(s)	98, 303, 363
BstYI	RGATCY	3 cut(s)	98, 303, 363
BsuRI	GGCC	7 cut(s)	182, 192, 346, 710, 1001, 1118, 1287
BtgI	CCRYGG	1 cut(s)	474
BtgZI	GCGATG	1 cut(s)	837
BtsCI	GGATG	3 cut(s)	1030, 1413, 1460
BtsIMutI	CAGTG	3 cut(s)	488, 899, 960
BveI	ACCTGC	2 cut(s)	302, 1261
Cac8I	GCNNGC	3 cut(s)	570, 889, 941
Cfr10I	RCCGGY	2 cut(s)	110, 887
Cfr13I	GGNCC	5 cut(s)	181, 478, 1000, 1250, 1286
CseI	GACGC	2 cut(s)	458, 768
Csp6I	GTAC	6 cut(s)	229, 351, 733, 1045, 1165, 1312
CviAII	CATG	7 cut(s)	475, 655, 808, 830, 1050, 1264, 1339
CviQI	GTAC	6 cut(s)	229, 351, 733, 1045, 1165, 1312
DdeI	CTNAG	4 cut(s)	381, 620, 1073, 1467
DpnI	GATC	9 cut(s)	100, 152, 305, 365, 600, 719, 740, 986, 1459
DpnII	GATC	9 cut(s)	98, 150, 303, 363, 598, 717, 738, 984, 1457
DraI	TTTAAA	1 cut(s)	1141
DrdI	GACNNNNNNGTC	1 cut(s)	391
DriI	GACNNNNNGTC	1 cut(s)	799
DseDI	GACNNNNNNGTC	1 cut(s)	391
EaeI	YGGCCR	2 cut(s)	708, 1116
Eam1104I	CTCTTC	4 cut(s)	127, 181, 396, 1349
Eam1105I	GACNNNNNGTC	1 cut(s)	799
EarI	CTCTTC	4 cut(s)	127, 181, 396, 1349
EciI	GGCGGA	2 cut(s)	1296, 1427
Eco130I	CCWWGG	2 cut(s)	315, 474
Eco24I	GRGCYC	1 cut(s)	1175
Eco31I	GGTCTC	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	856
Eco47I	GGWCC	2 cut(s)	478, 1250
Eco57I	CTGAAG	3 cut(s)	863, 1016, 1087
Eco88I	CYCGRG	2 cut(s)	1288, 1317
Eco91I	GGTNACC	1 cut(s)	140
EcoNI	CCTNNNNNAGG	2 cut(s)	548, 1092
EcoO109I	RGGNCCY	2 cut(s)	1000, 1250
EcoO65I	GGTNACC	1 cut(s)	140
EcoRII	CCWGG	3 cut(s)	676, 1003, 1300
EcoRV	GATATC	1 cut(s)	856
EcoT14I	CCWWGG	2 cut(s)	315, 474
EcoT22I	ATGCAT	1 cut(s)	1344
EcoT38I	GRGCYC	1 cut(s)	1175
ErhI	CCWWGG	2 cut(s)	315, 474
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	7 cut(s)	478, 658, 811, 833, 1053, 1267, 1342
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	2 cut(s)	694, 1263
FatI	CATG	7 cut(s)	474, 654, 807, 829, 1049, 1263, 1338
FauI	CCCGC	1 cut(s)	132
FblI	GTMKAC	2 cut(s)	357, 966
Fnu4HI	GCNGC	3 cut(s)	286, 573, 708
FokI	GGATG	3 cut(s)	1037, 1400, 1447
FriOI	GRGCYC	1 cut(s)	1175
Fsp4HI	GCNGC	3 cut(s)	286, 573, 708
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	3 cut(s)	286, 573, 708
GsaI	CCCAGC	1 cut(s)	514
GsuI	CTGGAG	1 cut(s)	1189
HaeIII	GGCC	7 cut(s)	182, 192, 346, 710, 1001, 1118, 1287
HapII	CCGG	9 cut(s)	111, 128, 146, 184, 217, 648, 888, 1208, 1214
HgaI	GACGC	2 cut(s)	458, 768
Hin1I	GRCGYC	1 cut(s)	779
Hin1II	CATG	7 cut(s)	478, 658, 811, 833, 1053, 1267, 1342
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	5 cut(s)	135, 651, 682, 848, 1010
HpaII	CCGG	9 cut(s)	111, 128, 146, 184, 217, 648, 888, 1208, 1214
HphI	GGTGA	7 cut(s)	16, 25, 100, 160, 774, 1363, 1442
Hpy166II	GTNNAC	4 cut(s)	108, 223, 358, 967
Hpy188I	TCNGA	5 cut(s)	214, 843, 853, 1035, 1150
Hpy188III	TCNNGA	5 cut(s)	247, 439, 721, 1233, 1317
Hpy8I	GTNNAC	4 cut(s)	108, 223, 358, 967
Hpy99I	CGWCG	3 cut(s)	359, 394, 452
HpyCH4III	ACNGT	5 cut(s)	337, 355, 582, 907, 964
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	6 cut(s)	297, 457, 575, 911, 1256, 1342
HpyF10VI	GCNNNNNNNGC	3 cut(s)	294, 704, 1124
HpyF3I	CTNAG	4 cut(s)	381, 620, 1073, 1467
HpySE526I	ACGT	1 cut(s)	609
Hsp92I	GRCGYC	1 cut(s)	779
Hsp92II	CATG	7 cut(s)	478, 658, 811, 833, 1053, 1267, 1342
KroI	GCCGGC	1 cut(s)	887
KroNI	GCCGGC	1 cut(s)	889
Kzo9I	GATC	9 cut(s)	98, 150, 303, 363, 598, 717, 738, 984, 1457
LmnI	GCTCC	4 cut(s)	10, 1097, 1170, 1408
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	2 cut(s)	414, 651
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	4 cut(s)	140, 331, 780, 801
MalI	GATC	9 cut(s)	100, 152, 305, 365, 600, 719, 740, 986, 1459
MbiI	CCGCTC	1 cut(s)	1466
MboI	GATC	9 cut(s)	98, 150, 303, 363, 598, 717, 738, 984, 1457
MflI	RGATCY	3 cut(s)	98, 303, 363
MhlI	GDGCHC	2 cut(s)	490, 1175
MluCI	AATT	6 cut(s)	203, 240, 867, 991, 1143, 1220
MlyI	GAGTC	4 cut(s)	144, 676, 857, 1019
MmeI	TCCRAC	2 cut(s)	49, 237
Mph1103I	ATGCAT	1 cut(s)	1344
MroNI	GCCGGC	1 cut(s)	887
MroXI	GAANNNNTTC	1 cut(s)	1358
MseI	TTAA	3 cut(s)	531, 702, 1140
MslI	CAYNNNNRTG	3 cut(s)	659, 954, 1191
MspI	CCGG	9 cut(s)	111, 128, 146, 184, 217, 648, 888, 1208, 1214
MspR9I	CCNGG	8 cut(s)	129, 146, 184, 218, 678, 1005, 1208, 1302
Mva1269I	GAATGC	2 cut(s)	649, 1198
MvaI	CCWGG	3 cut(s)	678, 1005, 1302
MwoI	GCNNNNNNNGC	3 cut(s)	294, 704, 1124
NaeI	GCCGGC	1 cut(s)	889
NciI	CCSGG	5 cut(s)	129, 146, 184, 218, 1208
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	9 cut(s)	98, 150, 303, 363, 598, 717, 738, 984, 1457
NgoMIV	GCCGGC	1 cut(s)	887
NlaIII	CATG	7 cut(s)	478, 658, 811, 833, 1053, 1267, 1342
NlaIV	GGNNCC	6 cut(s)	1002, 1083, 1099, 1172, 1212, 1251
NmuCI	GTSAC	3 cut(s)	331, 780, 801
NsiI	ATGCAT	1 cut(s)	1344
NspI	RCATGY	2 cut(s)	811, 1267
PaqCI	CACCTGC	1 cut(s)	302
PasI	CCCWGGG	2 cut(s)	677, 1004
PciI	ACATGT	1 cut(s)	1263
PctI	GAATGC	2 cut(s)	649, 1198
PdiI	GCCGGC	1 cut(s)	889
PdmI	GAANNNNTTC	1 cut(s)	1358
PfeI	GAWTC	1 cut(s)	651
PflFI	GACNNNGTC	2 cut(s)	388, 962
PfoI	TCCNGGA	2 cut(s)	1206, 1300
PkrI	GCNGC	3 cut(s)	287, 574, 709
PleI	GAGTC	4 cut(s)	143, 676, 856, 1018
PpsI	GAGTC	4 cut(s)	143, 676, 856, 1018
PpuMI	RGGWCCY	1 cut(s)	1250
PscI	ACATGT	1 cut(s)	1263
Psp5II	RGGWCCY	1 cut(s)	1250
Psp6I	CCWGG	3 cut(s)	676, 1003, 1300
PspEI	GGTNACC	1 cut(s)	140
PspFI	CCCAGC	1 cut(s)	510
PspGI	CCWGG	3 cut(s)	676, 1003, 1300
PspN4I	GGNNCC	6 cut(s)	1002, 1083, 1099, 1172, 1212, 1251
PspPI	GGNCC	5 cut(s)	181, 478, 1000, 1250, 1286
PspPPI	RGGWCCY	1 cut(s)	1250
PsrI	GAACNNNNNNTAC	2 cut(s)	1259, 1291
PsuI	RGATCY	3 cut(s)	98, 303, 363
PsyI	GACNNNGTC	2 cut(s)	388, 962
RsaI	GTAC	6 cut(s)	230, 352, 734, 1046, 1166, 1313
RsaNI	GTAC	6 cut(s)	229, 351, 733, 1045, 1165, 1312
RseI	CAYNNNNRTG	3 cut(s)	659, 954, 1191
SalI	GTCGAC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	531, 702, 1140
SatI	GCNGC	3 cut(s)	286, 573, 708
Sau3AI	GATC	9 cut(s)	98, 150, 303, 363, 598, 717, 738, 984, 1457
Sau96I	GGNCC	5 cut(s)	181, 478, 1000, 1250, 1286
ScaI	AGTACT	3 cut(s)	230, 1046, 1313
SchI	GAGTC	4 cut(s)	144, 676, 857, 1019
ScrFI	CCNGG	8 cut(s)	129, 146, 184, 218, 678, 1005, 1208, 1302
SduI	GDGCHC	2 cut(s)	490, 1175
SfaNI	GCATC	2 cut(s)	414, 651
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	2 cut(s)	478, 1250
SmiMI	CAYNNNNRTG	3 cut(s)	659, 954, 1191
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	6 cut(s)	203, 240, 867, 991, 1143, 1220
SsiI	CCGC	8 cut(s)	125, 285, 707, 767, 1085, 1281, 1438, 1464
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	8 cut(s)	127, 144, 182, 216, 676, 1003, 1206, 1300
StyI	CCWWGG	2 cut(s)	315, 474
TaaI	ACNGT	5 cut(s)	337, 355, 582, 907, 964
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	6 cut(s)	357, 377, 447, 659, 669, 1181
TasI	AATT	6 cut(s)	203, 240, 867, 991, 1143, 1220
TatI	WGTACW	5 cut(s)	228, 732, 1044, 1164, 1311
TauI	GCSGC	2 cut(s)	288, 710
TfiI	GAWTC	1 cut(s)	651
Tru1I	TTAA	3 cut(s)	531, 702, 1140
Tru9I	TTAA	3 cut(s)	531, 702, 1140
TscAI	CASTG	3 cut(s)	488, 906, 967
TseFI	GTSAC	3 cut(s)	331, 780, 801
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	3 cut(s)	331, 780, 801
TspDTI	ATGAA	6 cut(s)	247, 656, 910, 1055, 1327, 1436
TspGWI	ACGGA	3 cut(s)	385, 675, 1263
TspRI	CASTG	3 cut(s)	488, 906, 967
Tth111I	GACNNNGTC	2 cut(s)	388, 962
VpaK11BI	GGWCC	2 cut(s)	478, 1250
XagI	CCTNNNNNAGG	2 cut(s)	548, 1092
XapI	RAATTY	6 cut(s)	203, 240, 867, 991, 1143, 1220
XceI	RCATGY	2 cut(s)	811, 1267
XmiI	GTMKAC	2 cut(s)	357, 966
XmnI	GAANNNNTTC	1 cut(s)	1358
XspI	CTAG	1 cut(s)	348
ZrmI	AGTACT	3 cut(s)	230, 1046, 1313
Zsp2I	ATGCAT	1 cut(s)	1344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.