Rmu_sc0000999.1_g000011

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000999.1
OG0000192
Physical Location & Seq
Reverse (-)
28982 .. 31005
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000999.1_g000011.1.cds

Sequence Viewer

Length: 489 bp
atggagattttgaaggccaaaaaatttggcgaggcactcaattgggatgatttgcaaaaaatgaagtattcgtggaacgtagccctggaggcgatgaggctcataccacctcttcagggaacatttagagaggctgcaaaggacttcacttacgaaggttatacaattcctaaaggatggaaggtttactggacagtgagcaccacaaccatgaaccctgaatattttccagcgccagaagagtttgatcctacaaggttcgagaaagcaactcctccgccttacacaaacatcccattcgggagcggtcctcgaatttgccccggaaaggactacgctcgtctgcaaattcttagttttatgcaccatcttgttataagattcaaatgggaacttgtgaaccctaattgcaagatcacaggtggtatgaatccctttccagttgatgggctgaaggttcgcctccaagctcaacccagtcaagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

162

Amino Acids

18.65

Weight (kDa)

9.04

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AccB7I CCANNNNNTGG 1 cut(s) 446
AccBSI CCGCTC 1 cut(s) 306
AciI CCGC 2 cut(s) 278, 306
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 3 cut(s) 23, 315, 348
AcuI CTGAAG 2 cut(s) 98, 473
AfiI CCNNNNNNNGG 3 cut(s) 116, 328, 446
AgsI TTSAA 2 cut(s) 13, 385
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 2 cut(s) 470, 485
AluI AGCT 2 cut(s) 470, 485
Alw21I GWGCWC 1 cut(s) 203
AlwI GGATC 1 cut(s) 242
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 3 cut(s) 23, 315, 348
Asp700I GAANNNNTTC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 308
AsuC2I CCSGG 1 cut(s) 324
AvaII GGWCC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 121
BccI CCATC 3 cut(s) 171, 375, 440
BciT130I CCWGG 1 cut(s) 86
BcnI CCSGG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 89
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 2 cut(s) 86, 324
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 308
BmrFI CCNGG 2 cut(s) 86, 324
BmrI ACTGGG 1 cut(s) 471
BmuI ACTGGG 1 cut(s) 471
BplI GAGNNNNNCTC 2 cut(s) 295, 327
BpmI CTGGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 84, 322
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 328, 446
Bse1I ACTGG 3 cut(s) 194, 440, 477
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 84, 322
BseGI GGATG 3 cut(s) 52, 182, 291
BseLI CCNNNNNNNGG 3 cut(s) 116, 328, 446
BseNI ACTGG 3 cut(s) 194, 440, 477
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 1 cut(s) 324
BslI CCNNNNNNNGG 3 cut(s) 116, 328, 446
BsnI GGCC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 247, 414
BspACI CCGC 2 cut(s) 278, 306
BspANI GGCC 1 cut(s) 17
BspPI GGATC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 306
BsrI ACTGG 3 cut(s) 194, 440, 477
BssECI CCNNGG 2 cut(s) 84, 322
BssMI GATC 2 cut(s) 247, 414
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 2 cut(s) 117, 234
BstDEI CTNAG 1 cut(s) 353
BstF5I GGATG 3 cut(s) 52, 182, 291
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 2 cut(s) 250, 417
BstMBI GATC 2 cut(s) 247, 414
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 84, 322
BstV1I GCAGC 1 cut(s) 121
BsuRI GGCC 1 cut(s) 17
BtgZI GCGATG 1 cut(s) 107
BtsCI GGATG 3 cut(s) 52, 182, 291
BtsIMutI CAGTG 1 cut(s) 201
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 308
CviAII CATG 1 cut(s) 211
CviJI RGCY 7 cut(s) 17, 83, 100, 134, 451, 470, 485
CviKI_1 RGCY 7 cut(s) 17, 83, 100, 134, 451, 470, 485
DdeI CTNAG 1 cut(s) 353
DpnI GATC 2 cut(s) 249, 416
DpnII GATC 2 cut(s) 247, 414
Eam1104I CTCTTC 2 cut(s) 117, 234
EarI CTCTTC 2 cut(s) 117, 234
EciI GGCGGA 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 2 cut(s) 98, 473
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 214
FaiI YATR 6 cut(s) 104, 162, 212, 362, 377, 428
FatI CATG 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 3 cut(s) 59, 189, 278
Fsp4HI GCNGC 1 cut(s) 135
GlaI GCGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 107
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 1 cut(s) 17
HapII CCGG 1 cut(s) 324
HhaI GCGC 1 cut(s) 235
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 2 cut(s) 381, 430
HpaII CCGG 1 cut(s) 324
Hpy166II GTNNAC 2 cut(s) 187, 400
Hpy188III TCNNGA 2 cut(s) 262, 301
Hpy8I GTNNAC 2 cut(s) 187, 400
HpyAV CCTTC 4 cut(s) 7, 149, 175, 448
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 5 cut(s) 55, 137, 346, 364, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 353
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 2 cut(s) 247, 414
LmnI GCTCC 1 cut(s) 303
Lsp1109I GCAGC 1 cut(s) 121
MaeII ACGT 1 cut(s) 78
MalI GATC 2 cut(s) 249, 416
MbiI CCGCTC 1 cut(s) 306
MboI GATC 2 cut(s) 247, 414
MboII GAAGA 2 cut(s) 104, 251
MfeI CAATTG 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 6 cut(s) 23, 40, 165, 315, 348, 406
MnlI CCTC 8 cut(s) 25, 82, 90, 120, 124, 285, 321, 473
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 1 cut(s) 487
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 2 cut(s) 86, 324
MunI CAATTG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 89
NciI CCSGG 1 cut(s) 324
NdeII GATC 2 cut(s) 247, 414
NlaIII CATG 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 2 cut(s) 381, 430
PflMI CCANNNNNTGG 1 cut(s) 446
PkrI GCNGC 1 cut(s) 136
PsiI TTATAA 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspPI GGNCC 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 1 cut(s) 487
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 247, 414
Sau96I GGNCC 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 86, 324
SduI GDGCHC 1 cut(s) 203
SetI ASST 9 cut(s) 81, 112, 160, 186, 260, 424, 459, 472, 487
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 209
Sse9I AATT 6 cut(s) 23, 40, 165, 315, 348, 406
SsiI CCGC 2 cut(s) 278, 306
SspI AATATT 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 84, 322
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 261, 313
TasI AATT 6 cut(s) 23, 40, 165, 315, 348, 406
TfiI GAWTC 2 cut(s) 381, 430
Tru1I TTAA 1 cut(s) 487
Tru9I TTAA 1 cut(s) 487
TscAI CASTG 1 cut(s) 201
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 3 cut(s) 77, 227, 443
TspRI CASTG 1 cut(s) 201
Van91I CCANNNNNTGG 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 3 cut(s) 23, 315, 348
XmnI GAANNNNTTC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.