Rh1BG055200

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000192
Physical Location & Seq
Forward (+)
8083987 .. 8084733
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG055200.1

Sequence Viewer

Length: 747 bp
ATGGCCATGCTGTGCACCGCTGCTGGAAACAAATTGCTGTTTTCAAACGAGAACAAACTGGTCAAGTCCTGGTGGCCTGCTAACATCAAAAAGATGTTTCCAAACACCAACGAAGCAGACTTCTCCAAAGAGACCATCCGACTGCGCAAAGTCATGTCTACATTTCTCAAGCCTGACTCTATCCGAAAGCATATAGGCATCATGGATCAGGTCACCAAACACCATTTCGATAAGCATTGGTCCTCGCTGGATCAAAAACAAGTGATCATGTTTCACTCATTAGCAAAGAAGCATACCTTAGCATTATCTTGCAGACTCTTCTTAAACATCGAGGATCCACAAGTGATTGCCAAGCTAGAGAAACCCATTCGGCATATAAATGCAGGGTTCGTTTCATTGCCAGTAGATCTGCCGGGCACCAACTTCAACAGAGCCATCAGAGCATCCAAGAAAATGAGGGAGGAAATTGAGAGTATGGTTGTGCAGAAGAAGACAGATCTCATGAATCTGAATTTGATTGATCGTGAACAATTAGCGAACGCGCCACAAGATCTAATGTCTAGCTGGCTCATGGAGACATATAGCGATGGAGAAGAGATGACAGAAGCGGACATTGCCAAAAAGTTGTGTGCTATAATATTTGCCGGTTATGACTCTATAATTAACACACTGTGTTCCTGTGTCATCTTTCTGTCACAGCTTCCTCCAGTTTATGATGCCGTCCTTAAAGGTACATTATATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

248

Amino Acids

28.28

Weight (kDa)

8.87

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 50 - 241 9.4e-08 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 416
AccI GTMKAC 1 cut(s) 158
AccII CGCG 1 cut(s) 542
AciI CCGC 2 cut(s) 18, 608
AclWI GGATC 4 cut(s) 213, 258, 329, 342
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 511
AdeI CACNNNGTG 1 cut(s) 672
AfaI GTAC 1 cut(s) 733
AgsI TTSAA 2 cut(s) 45, 427
AjnI CCWGG 1 cut(s) 68
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 3 cut(s) 355, 564, 700
AluI AGCT 3 cut(s) 355, 564, 700
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 2 cut(s) 125, 569
Alw44I GTGCAC 1 cut(s) 13
AlwI GGATC 4 cut(s) 213, 258, 329, 342
AoxI GGCC 2 cut(s) 3, 74
ApaLI GTGCAC 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 511
AspLEI GCGC 2 cut(s) 147, 544
AspS9I GGNCC 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 205
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 2 cut(s) 17, 419
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 7
BccI CCATC 3 cut(s) 143, 443, 581
BceAI ACGGC 1 cut(s) 704
BciT130I CCWGG 1 cut(s) 70
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 2 cut(s) 125, 569
BfaI CTAG 2 cut(s) 356, 561
BglII AGATCT 3 cut(s) 406, 496, 550
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 2 cut(s) 70, 414
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 2 cut(s) 336, 418
BmrFI CCNGG 2 cut(s) 70, 414
BmsI GCATC 3 cut(s) 207, 452, 706
BpiI GAAGAC 1 cut(s) 497
BpmI CTGGAG 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 298
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 644
Bse1I ACTGG 3 cut(s) 63, 401, 707
Bse3DI GCAATG 2 cut(s) 395, 612
BseBI CCWGG 1 cut(s) 70
BseGI GGATG 2 cut(s) 135, 443
BseMI GCAATG 2 cut(s) 395, 612
BseNI ACTGG 3 cut(s) 63, 401, 707
BseSI GKGCMC 2 cut(s) 17, 419
BseXI GCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 503
Bsh1236I CGCG 1 cut(s) 542
BshFI GGCC 2 cut(s) 5, 76
BshNI GGYRCC 1 cut(s) 416
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 2 cut(s) 413, 645
BsmAI GTCTC 2 cut(s) 125, 569
BsnI GGCC 2 cut(s) 5, 76
Bso31I GGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 17, 419
Bsp143I GATC 8 cut(s) 205, 250, 264, 334, 406, 496, 520, 550
BspACI CCGC 2 cut(s) 18, 608
BspANI GGCC 2 cut(s) 5, 76
BspFNI CGCG 1 cut(s) 542
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 336, 418
BspPI GGATC 4 cut(s) 213, 258, 329, 342
BspT107I GGYRCC 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 125
BsrDI GCAATG 2 cut(s) 395, 612
BsrFI RCCGGY 1 cut(s) 644
BsrI ACTGG 3 cut(s) 63, 401, 707
BssAI RCCGGY 1 cut(s) 644
BssMI GATC 8 cut(s) 205, 250, 264, 334, 406, 496, 520, 550
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 672
Bst6I CTCTTC 2 cut(s) 323, 588
BstC8I GCNNGC 2 cut(s) 78, 566
BstDEI CTNAG 1 cut(s) 298
BstEII GGTNACC 1 cut(s) 211
BstF5I GGATG 2 cut(s) 135, 443
BstFNI CGCG 1 cut(s) 542
BstHHI GCGC 2 cut(s) 147, 544
BstKTI GATC 8 cut(s) 208, 253, 267, 337, 409, 499, 523, 553
BstMAI GTCTC 2 cut(s) 125, 569
BstMBI GATC 8 cut(s) 205, 250, 264, 334, 406, 496, 520, 550
BstMWI GCNNNNNNNGC 2 cut(s) 440, 614
BstNI CCWGG 1 cut(s) 70
BstPI GGTNACC 1 cut(s) 211
BstSCI CCNGG 2 cut(s) 68, 412
BstSLI GKGCMC 2 cut(s) 17, 419
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 4 cut(s) 334, 406, 496, 550
BstYI RGATCY 4 cut(s) 334, 406, 496, 550
BsuRI GGCC 2 cut(s) 5, 76
BtgZI GCGATG 1 cut(s) 600
BtsCI GGATG 2 cut(s) 135, 443
BtsIMutI CAGTG 1 cut(s) 668
Cac8I GCNNGC 2 cut(s) 78, 566
CciI TCATGA 1 cut(s) 501
CfoI GCGC 2 cut(s) 147, 544
Cfr10I RCCGGY 1 cut(s) 644
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 732
CviAII CATG 6 cut(s) 7, 154, 202, 268, 502, 571
CviJI RGCY 8 cut(s) 5, 76, 172, 355, 434, 564, 568, 700
CviKI_1 RGCY 8 cut(s) 5, 76, 172, 355, 434, 564, 568, 700
CviQI GTAC 1 cut(s) 732
DdeI CTNAG 1 cut(s) 298
DpnI GATC 8 cut(s) 207, 252, 266, 336, 408, 498, 522, 552
DpnII GATC 8 cut(s) 205, 250, 264, 334, 406, 496, 520, 550
DraIII CACNNNGTG 1 cut(s) 672
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 323, 588
EarI CTCTTC 2 cut(s) 323, 588
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 240
Eco91I GGTNACC 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 68
FaeI CATG 6 cut(s) 10, 157, 205, 271, 505, 574
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 6 cut(s) 6, 153, 201, 267, 501, 570
FbaI TGATCA 1 cut(s) 264
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 2 cut(s) 122, 430
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 2 cut(s) 356, 561
FspI TGCGCA 1 cut(s) 146
GlaI GCGC 2 cut(s) 146, 543
GluI GCNGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 2 cut(s) 5, 76
HapII CCGG 2 cut(s) 413, 645
HhaI GCGC 2 cut(s) 147, 544
Hin1II CATG 6 cut(s) 10, 157, 205, 271, 505, 574
Hin6I GCGC 2 cut(s) 145, 542
HinP1I GCGC 2 cut(s) 145, 542
HinfI GANTC 4 cut(s) 176, 315, 505, 653
HpaII CCGG 2 cut(s) 413, 645
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 3 cut(s) 15, 159, 527
Hpy188I TCNGA 4 cut(s) 140, 185, 440, 510
Hpy188III TCNNGA 2 cut(s) 502, 524
Hpy8I GTNNAC 3 cut(s) 15, 159, 527
HpyCH4III ACNGT 1 cut(s) 672
HpyCH4V TGCA 4 cut(s) 15, 312, 383, 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 614
HpyF3I CTNAG 1 cut(s) 298
Hsp92II CATG 6 cut(s) 10, 157, 205, 271, 505, 574
HspAI GCGC 2 cut(s) 145, 542
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 8 cut(s) 205, 250, 264, 334, 406, 496, 520, 550
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 3 cut(s) 207, 452, 706
MaeI CTAG 2 cut(s) 356, 561
MaeIII GTNAC 2 cut(s) 211, 693
MalI GATC 8 cut(s) 207, 252, 266, 336, 408, 498, 522, 552
MboI GATC 8 cut(s) 205, 250, 264, 334, 406, 496, 520, 550
MboII GAAGA 4 cut(s) 310, 499, 502, 605
MflI RGATCY 4 cut(s) 334, 406, 496, 550
MhlI GDGCHC 2 cut(s) 17, 419
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 32, 465, 511, 530, 660
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 170, 309, 647
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 5 cut(s) 253, 325, 450, 454, 714
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 323, 663, 726
MslI CAYNNNNRTG 1 cut(s) 378
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 2 cut(s) 413, 645
MspR9I CCNGG 2 cut(s) 70, 414
MvaI CCWGG 1 cut(s) 70
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 2 cut(s) 440, 614
NciI CCSGG 1 cut(s) 414
NdeII GATC 8 cut(s) 205, 250, 264, 334, 406, 496, 520, 550
NlaIII CATG 6 cut(s) 10, 157, 205, 271, 505, 574
NlaIV GGNNCC 2 cut(s) 336, 418
NmuCI GTSAC 2 cut(s) 211, 693
NsbI TGCGCA 1 cut(s) 146
PagI TCATGA 1 cut(s) 501
PfeI GAWTC 1 cut(s) 505
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 3 cut(s) 170, 309, 647
PpsI GAGTC 3 cut(s) 170, 309, 647
Psp6I CCWGG 1 cut(s) 68
PspEI GGTNACC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 336, 418
PspPI GGNCC 1 cut(s) 240
PsuI RGATCY 4 cut(s) 334, 406, 496, 550
RsaI GTAC 1 cut(s) 733
RsaNI GTAC 1 cut(s) 732
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 3 cut(s) 323, 663, 726
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 8 cut(s) 205, 250, 264, 334, 406, 496, 520, 550
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 3 cut(s) 170, 309, 647
ScrFI CCNGG 2 cut(s) 70, 414
SduI GDGCHC 2 cut(s) 17, 419
SetI ASST 6 cut(s) 213, 299, 357, 566, 702, 733
SfaNI GCATC 3 cut(s) 207, 452, 706
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 5 cut(s) 32, 465, 511, 530, 660
SsiI CCGC 2 cut(s) 18, 608
SspI AATATT 1 cut(s) 639
SspMI CTAG 2 cut(s) 356, 561
StyD4I CCNGG 2 cut(s) 68, 412
TaaI ACNGT 1 cut(s) 672
TaqI TCGA 2 cut(s) 228, 330
TasI AATT 5 cut(s) 32, 465, 511, 530, 660
TfiI GAWTC 1 cut(s) 505
Tru1I TTAA 3 cut(s) 323, 663, 726
Tru9I TTAA 3 cut(s) 323, 663, 726
TscAI CASTG 1 cut(s) 675
TseFI GTSAC 2 cut(s) 211, 693
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 2 cut(s) 211, 693
TspDTI ATGAA 2 cut(s) 384, 518
TspRI CASTG 1 cut(s) 675
VneI GTGCAC 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 158
XspI CTAG 2 cut(s) 356, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.