Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004637.1

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Forward (+)

4652 .. 5194

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004637.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggagcttaacttctacctcaccctcctgttgggctttgtttccttcgtcaccttttctctcttcttcctcttctacaggcacagatctcagttcaccggcaacaacctccctccggggaaggtcggctacccggtgataggagagagctacgagttcctagccacgggatggaaaggccaccccgagaaattcatctttgaccgcatgaccaagtactcctccgaagtcttcaagacctccatcttcggcgagaaggcttgcatctttgccggcgccgcctgcaacaagttcttgttctccaacgagaacaagctcgtcactgcctggtggcctagctccgtcaacaaggttttcccttcttccatggagacttccgccaaagaggaggccaagaagatgaggaagatgctccccaacttcatgaaccctcaggctcttcaacgctacatcggaatcatggacaccatcgctcaacgacactttgctgatggctgggaaaacaagaaggaagtcgaggtcttcccccttgccaagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

180

Amino Acids

20.78

Weight (kDa)

9.39

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	171
AciI	CCGC	3 cut(s)	205, 279, 378
AcsI	RAATTY	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	5 cut(s)	31, 115, 140, 166, 171
AgsI	TTSAA	2 cut(s)	235, 443
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	4 cut(s)	7, 150, 316, 339
AluI	AGCT	4 cut(s)	7, 150, 316, 339
Alw26I	GTCTC	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	3 cut(s)	178, 332, 390
ApoI	RAATTY	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	278
AsuC2I	CCSGG	2 cut(s)	117, 134
AsuHPI	GGTGA	4 cut(s)	13, 43, 88, 148
AvaI	CYCGRG	1 cut(s)	185
AxyI	CCTNAGG	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	275
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
BbsI	GAAGAC	2 cut(s)	223, 514
BccI	CCATC	4 cut(s)	165, 251, 476, 485
BciT130I	CCWGG	1 cut(s)	328
BcnI	CCSGG	2 cut(s)	117, 134
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	2 cut(s)	161, 336
BfmI	CTRYAG	1 cut(s)	76
BfoI	RGCGCY	1 cut(s)	279
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	3 cut(s)	117, 134, 328
BmeT110I	CYCGRG	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	3 cut(s)	117, 134, 328
BmsI	GCATC	2 cut(s)	273, 399
BpiI	GAAGAC	2 cut(s)	223, 514
BpuMI	CCSGG	2 cut(s)	117, 134
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	116, 165, 366
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 115, 140, 166, 171
Bse118I	RCCGGY	2 cut(s)	98, 272
Bse21I	CCTNAGG	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	3 cut(s)	116, 165, 366
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	5 cut(s)	31, 115, 140, 166, 171
BseMII	CTCAG	2 cut(s)	104, 446
BseRI	GAGGAG	2 cut(s)	211, 401
BseYI	CCCAGC	1 cut(s)	495
BshFI	GGCC	3 cut(s)	180, 334, 392
BshNI	GGYRCC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	4 cut(s)	99, 116, 134, 273
BslI	CCNNNNNNNGG	5 cut(s)	31, 115, 140, 166, 171
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	3 cut(s)	180, 334, 392
BsoBI	CYCGRG	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	86
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	3 cut(s)	205, 279, 378
BspANI	GGCC	3 cut(s)	180, 334, 392
BspCNI	CTCAG	2 cut(s)	103, 445
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	277
BspQI	GCTCTTC	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	275
BsrFI	RCCGGY	2 cut(s)	98, 272
BssAI	RCCGGY	2 cut(s)	98, 272
BssECI	CCNNGG	3 cut(s)	116, 165, 366
BssMI	GATC	1 cut(s)	86
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	328
Bst6I	CTCTTC	3 cut(s)	68, 77, 444
BstACI	GRCGYC	1 cut(s)	276
BstC8I	GCNNGC	3 cut(s)	262, 274, 283
BstDEI	CTNAG	2 cut(s)	90, 432
BstDSI	CCRYGG	2 cut(s)	165, 366
BstF5I	GGATG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 282
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	3 cut(s)	115, 132, 326
BstSFI	CTRYAG	1 cut(s)	76
BstV2I	GAAGAC	2 cut(s)	223, 514
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	180, 334, 392
BtgI	CCRYGG	2 cut(s)	165, 366
BtgZI	GCGATG	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	176
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	3 cut(s)	262, 274, 283
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	1 cut(s)	278
Cfr10I	RCCGGY	2 cut(s)	98, 272
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	4 cut(s)	208, 367, 424, 460
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	90, 432
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
Eam1104I	CTCTTC	3 cut(s)	68, 77, 444
EarI	CTCTTC	3 cut(s)	68, 77, 444
EciI	GGCGGA	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	366
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	4 cut(s)	211, 370, 427, 463
FaiI	YATR	4 cut(s)	209, 368, 425, 461
FatI	CATG	4 cut(s)	207, 366, 423, 459
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	2 cut(s)	161, 336
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	279
GsaI	CCCAGC	1 cut(s)	499
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	3 cut(s)	180, 334, 392
HapII	CCGG	4 cut(s)	99, 116, 134, 273
HhaI	GCGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	211, 370, 427, 463
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	1 cut(s)	456
HpaII	CCGG	4 cut(s)	99, 116, 134, 273
HphI	GGTGA	4 cut(s)	13, 43, 88, 148
Hpy166II	GTNNAC	2 cut(s)	96, 346
Hpy188I	TCNGA	2 cut(s)	226, 455
Hpy188III	TCNNGA	2 cut(s)	235, 424
Hpy8I	GTNNAC	2 cut(s)	96, 346
HpyAV	CCTTC	5 cut(s)	55, 115, 250, 369, 502
HpyCH4V	TGCA	2 cut(s)	264, 285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 282
HpyF3I	CTNAG	2 cut(s)	90, 432
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	211, 370, 427, 463
HspAI	GCGC	1 cut(s)	276
KasI	GGCGCC	1 cut(s)	275
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	86
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	3 cut(s)	4, 344, 417
LweI	GCATC	2 cut(s)	273, 399
MaeI	CTAG	2 cut(s)	161, 336
MaeIII	GTNAC	2 cut(s)	49, 319
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	1 cut(s)	191
Mly113I	GGCGCC	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	327
MroNI	GCCGGC	1 cut(s)	272
MseI	TTAA	1 cut(s)	9
MspI	CCGG	4 cut(s)	99, 116, 134, 273
MspR9I	CCNGG	3 cut(s)	117, 134, 328
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	2 cut(s)	278, 282
NaeI	GCCGGC	1 cut(s)	274
NarI	GGCGCC	1 cut(s)	276
NciI	CCSGG	2 cut(s)	117, 134
NcoI	CCATGG	1 cut(s)	366
NdeII	GATC	1 cut(s)	86
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	4 cut(s)	211, 370, 427, 463
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	49, 319
PagI	TCATGA	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	444
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	456
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	280
PluTI	GGCGCC	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	86
ScaI	AGTACT	1 cut(s)	218
ScrFI	CCNGG	3 cut(s)	117, 134, 328
SfaNI	GCATC	2 cut(s)	273, 399
SfcI	CTRYAG	1 cut(s)	76
SfoI	GGCGCC	1 cut(s)	277
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	3 cut(s)	205, 279, 378
SspDI	GGCGCC	1 cut(s)	275
SspMI	CTAG	2 cut(s)	161, 336
StyD4I	CCNGG	3 cut(s)	115, 132, 326
StyI	CCWWGG	1 cut(s)	366
TaqI	TCGA	1 cut(s)	516
TasI	AATT	1 cut(s)	191
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	456
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	2 cut(s)	49, 319
Tsp45I	GTSAC	2 cut(s)	49, 319
TspDTI	ATGAA	3 cut(s)	184, 412, 440
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	1 cut(s)	328
Van91I	CCANNNNNTGG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	191
XspI	CTAG	2 cut(s)	161, 336
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.