Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004135.1

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Forward (+)

28079 .. 28630

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004135.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggtgatggagcaatattatttccaacccatcaccctcctcttgggctttgtttcctttctggcaatctctctcttggtgcttttctacaggcacagatcccagttcaccagcaacaacctcccgccaggtaacgtcggctacccggtgataggagagacctacgagttcgtctcttcgggtcagaaaggccaccccgagaagttcatcttagaccgggtgaacaagcactcctcccaagtcttcaagacctccttgattggggagagaactgccttcttctgcggcaccgcttgcaacaagttcttgttctccaatgaaaacaagcttgtcaaagtctggtttcctagctgtgtcgataagatcttcccttcttccaccggatccgccgcagaggaggccacaaagatgagaaggatgctacccaacttcgtgaagctcgacgctctgcaacgatacttcggaatcattgaccagtgtacccagtcccactttgcagatagctgggaaaaccaaaaggaagttcatgccttcgaactcaccaagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

183

Amino Acids

20.97

Weight (kDa)

8.87

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	5 cut(s)	125, 285, 291, 387, 390
AclWI	GGATC	3 cut(s)	93, 378, 391
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	3 cut(s)	43, 152, 261
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	127
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
AluBI	AGCT	4 cut(s)	328, 351, 439, 504
AluI	AGCT	4 cut(s)	328, 351, 439, 504
Alw26I	GTCTC	2 cut(s)	152, 178
AlwI	GGATC	3 cut(s)	93, 378, 391
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	190, 399
AsuC2I	CCSGG	2 cut(s)	146, 218
AsuHPI	GGTGA	6 cut(s)	16, 25, 100, 160, 232, 532
AsuII	TTCGAA	1 cut(s)	534
AvaI	CYCGRG	1 cut(s)	197
BaeI	ACNNNNGTAYC	2 cut(s)	463, 496
BamHI	GGATCC	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	235
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	129
BcnI	CCSGG	2 cut(s)	146, 218
BcoDI	GTCTC	2 cut(s)	152, 178
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	88
BglII	AGATCT	1 cut(s)	363
BisI	GCNGC	2 cut(s)	286, 390
BlsI	GCNGC	2 cut(s)	287, 391
Bme1390I	CCNGG	3 cut(s)	129, 146, 218
BmeT110I	CYCGRG	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	289, 385
BmrFI	CCNGG	3 cut(s)	129, 146, 218
BmrI	ACTGGG	2 cut(s)	97, 478
BmsI	GCATC	1 cut(s)	408
BmuI	ACTGGG	2 cut(s)	97, 478
BpiI	GAAGAC	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
Bpu14I	TTCGAA	1 cut(s)	534
BpuMI	CCSGG	2 cut(s)	146, 218
BsaI	GGTCTC	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	380
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 152, 261
Bse1I	ACTGG	3 cut(s)	103, 475, 484
BseBI	CCWGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	43, 152, 261
BseNI	ACTGG	3 cut(s)	103, 475, 484
BseRI	GAGGAG	3 cut(s)	29, 223, 410
BseYI	CCCAGC	1 cut(s)	504
BshFI	GGCC	2 cut(s)	192, 401
BshNI	GGYRCC	1 cut(s)	287
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	3 cut(s)	146, 217, 381
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	3 cut(s)	43, 152, 261
BsmAI	GTCTC	2 cut(s)	152, 178
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	192, 401
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	534
Bsp143I	GATC	3 cut(s)	98, 363, 383
BspACI	CCGC	5 cut(s)	125, 285, 291, 387, 390
BspANI	GGCC	2 cut(s)	192, 401
BspLI	GGNNCC	2 cut(s)	289, 385
BspPI	GGATC	3 cut(s)	93, 378, 391
BspT104I	TTCGAA	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	152
BsrI	ACTGG	3 cut(s)	103, 475, 484
BssMI	GATC	3 cut(s)	98, 363, 383
Bst2UI	CCWGG	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	181
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstBI	TTCGAA	1 cut(s)	534
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	423
BstKTI	GATC	3 cut(s)	101, 366, 386
BstMAI	GTCTC	2 cut(s)	152, 178
BstMBI	GATC	3 cut(s)	98, 363, 383
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 398
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	3 cut(s)	127, 144, 216
BstSFI	CTRYAG	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	235
BstX2I	RGATCY	3 cut(s)	98, 363, 383
BstYI	RGATCY	3 cut(s)	98, 363, 383
BsuRI	GGCC	2 cut(s)	192, 401
BtsCI	GGATG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	482
Cac8I	GCNNGC	1 cut(s)	295
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	1 cut(s)	527
CviJI	RGCY	8 cut(s)	48, 141, 192, 328, 351, 401, 439, 504
CviKI_1	RGCY	8 cut(s)	48, 141, 192, 328, 351, 401, 439, 504
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	3 cut(s)	100, 365, 385
DpnII	GATC	3 cut(s)	98, 363, 383
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	1 cut(s)	530
FaiI	YATR	1 cut(s)	528
FalI	AAGNNNNNCTT	4 cut(s)	194, 226, 239, 271
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	1 cut(s)	526
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	286, 390
FokI	GGATG	1 cut(s)	430
Fsp4HI	GCNGC	2 cut(s)	286, 390
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	2 cut(s)	286, 390
GsaI	CCCAGC	1 cut(s)	508
HaeIII	GGCC	2 cut(s)	192, 401
HapII	CCGG	3 cut(s)	146, 217, 381
HgaI	GACGC	1 cut(s)	452
Hin1II	CATG	1 cut(s)	530
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	465
HpaII	CCGG	3 cut(s)	146, 217, 381
HphI	GGTGA	6 cut(s)	16, 25, 100, 160, 232, 532
Hpy166II	GTNNAC	3 cut(s)	108, 223, 480
Hpy188I	TCNGA	2 cut(s)	186, 464
Hpy188III	TCNNGA	2 cut(s)	247, 433
Hpy8I	GTNNAC	3 cut(s)	108, 223, 480
Hpy99I	CGWCG	2 cut(s)	140, 446
HpyAV	CCTTC	4 cut(s)	286, 381, 408, 541
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	3 cut(s)	297, 451, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 398
HpyF3I	CTNAG	1 cut(s)	211
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	530
Kzo9I	GATC	3 cut(s)	98, 363, 383
LmnI	GCTCC	1 cut(s)	10
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	100, 365, 385
MboI	GATC	3 cut(s)	98, 363, 383
MboII	GAAGA	5 cut(s)	168, 235, 271, 358, 366
MflI	RGATCY	3 cut(s)	98, 363, 383
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	7 cut(s)	47, 50, 131, 244, 262, 388, 391
MslI	CAYNNNNRTG	1 cut(s)	407
MspI	CCGG	3 cut(s)	146, 217, 381
MspR9I	CCNGG	3 cut(s)	129, 146, 218
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	294, 398
NciI	CCSGG	2 cut(s)	146, 218
NdeII	GATC	3 cut(s)	98, 363, 383
NlaIII	CATG	1 cut(s)	530
NlaIV	GGNNCC	2 cut(s)	289, 385
NspV	TTCGAA	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	465
PkrI	GCNGC	2 cut(s)	287, 391
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	289, 385
PsuI	RGATCY	3 cut(s)	98, 363, 383
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
RseI	CAYNNNNRTG	1 cut(s)	407
SatI	GCNGC	2 cut(s)	286, 390
Sau3AI	GATC	3 cut(s)	98, 363, 383
ScrFI	CCNGG	3 cut(s)	129, 146, 218
SetI	ASST	9 cut(s)	123, 133, 138, 164, 254, 330, 353, 441, 506
SfaNI	GCATC	1 cut(s)	408
SfcI	CTRYAG	1 cut(s)	88
SfuI	TTCGAA	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	407
SsiI	CCGC	5 cut(s)	125, 285, 291, 387, 390
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	127, 144, 216
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	357, 441, 534
TauI	GCSGC	2 cut(s)	288, 392
TfiI	GAWTC	1 cut(s)	465
TscAI	CASTG	1 cut(s)	482
TspDTI	ATGAA	3 cut(s)	196, 333, 515
TspRI	CASTG	1 cut(s)	482
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.